Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Heliconius_20melpomene_20melpomene_20[genbank_20GCA_5F000313835.2_20 2012-03-01] 4,309 sequences; 273,786,188 total letters Query= NC_025678.1 Length=32661 Score E Sequences producing significant alignments: (Bits) Value seq3063 295 1e-75 >seq3063 Length=7092 Score = 295 bits (326), Expect = 1e-75 Identities = 320/421 (76%), Gaps = 4/421 (1%) Strand=Plus/Plus Query 10861 GTTACTGCGTACGAGCAAACTGTGAAAGAGGAAATGAACTTTCAAAAAAGTTTTAACAAT 10920 ||||| ||||||||||| || ||||| |||| || |||||||||||||| |||||||| Sbjct 6673 GTTACCGCGTACGAGCAGACGGTGAACCAGGAGATTAACTTTCAAAAAAGCTTTAACAAC 6732 Query 10921 CATGTAAGAACTCTAATTGCCAGGGAAGAGGTGGCTATTGGCCTGATGCATCTGTGGGAC 10980 || || | || || | || | || ||||||||||| || |||||||||||||||||| Sbjct 6733 CACGTGCGCACGCTTGTGGCGCGCGAGGAGGTGGCTATAGGACTGATGCATCTGTGGGAC 6792 Query 10981 TTCTTGGAAGC-CTATGTA-CAAAACCCCACCAGTAAACCCCTTACCGCTCAGCtttttt 11038 || || |||| | || | |||||||| | || || || || | || ||||| || Sbjct 6793 TT--TGTAAGCGCGCTGGAGCAAAACCCAAATAGCAAGCCGCTCATGGCGCAGCTGTTCC 6850 Query 11039 tAATTGTGCAGCACAGCCGAGACAATGAGACATTTAGGGACGCTTTGTTAAATATTGCTG 11098 | || |||||||||||| | ||||| ||| |||| ||||| || || |||| || | | Sbjct 6851 TTATAGTGCAGCACAGCAGGGACAACGAGGCATTCAGGGATGCGCTGCTAAACATAGTAG 6910 Query 11099 AGCCAGAAGGACGCTGGTTGCTCGATTTAATTAACATTTTGCAAAGTATTGTGGTCCAGG 11158 |||| || || |||||| |||||||||| || |||||| |||| || || ||||| |||| Sbjct 6911 AGCCCGAGGGCCGCTGGCTGCTCGATTTGATAAACATTCTGCAGAGCATAGTGGTGCAGG 6970 Query 11159 AAAGAAGTCTGAGTTTAGCCGATAAGGTGGCAGCCATCAATTATTCTATGCTTAGCTTAG 11218 | | || |||| | || || |||||||| ||||| || ||||| ||||| || | | Sbjct 6971 AGCGCAGCTTGAGCCTGGCTGACAAGGTGGCCGCCATTAACTATTCCATGCTCAGTCTGG 7030 Query 11219 GAAAGTTCTACGCACGAAAAATTTACAAAACTCCTTATGTTCCCATTGACAAAGAAGTAA 11278 | ||||| ||||| || || || ||| | || ||||| |||||||| ||||| || |||| Sbjct 7031 GCAAGTTTTACGCCCGCAAGATATACCATACCCCTTACGTTCCCATAGACAAGGAGGTAA 7090 Query 11279 A 11279 | Sbjct 7091 A 7091 Score = 84.2 bits (92), Expect = 5e-12 Identities = 126/179 (70%), Gaps = 0/179 (0%) Strand=Plus/Plus Query 15693 CGACGCGTGCAGTGGAAAGGGAGAACGGTGCGGCGTATCCTGAGACCGGGAACGACCGTG 15752 || || || ||||||||||| || || | ||| | || |||| || || ||||| Sbjct 801 CGGCGGGTACAGTGGAAAGGTCGACGCGTAAGACGTGTTTTGCGACCCGGCACCACCGTA 860 Query 15753 GTATTTTCTCCCGGAGAACGCTCGTCACGCACGTTCAAGCGGTCCTATGATGAGGTTTAC 15812 || ||| | ||||| || ||||| | ||||| | |||||| ||||||||||| ||| Sbjct 861 GTTTTTACGCCCGGTGAGCGCTCCACCCGCACCTACAAGCGCGTGTATGATGAGGTGTAC 920 Query 15813 GCAGATGAGGATATTCTGGAACAGGCGCTAGAGCAGAGCGGGGAATTTGCATACGGCAA 15871 | || ||||| | || || ||||| |||| |||||| ||||| ||||| || Sbjct 921 GGCGACGAGGACCTGCTTGAGCAGGCCAACGAGCGCCTCGGGGAGTTTGCCTACGGAAA 979 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 104388258244734