Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Heliconius_20melpomene_20melpomene_20[genbank_20GCA_5F000313835.2_20 2012-03-01] 4,309 sequences; 273,786,188 total letters Query= NC_026141.2 Length=4988 Score E Sequences producing significant alignments: (Bits) Value seq2314 104 7e-19 seq1218 104 7e-19 seq2265 102 3e-18 seq1351 102 3e-18 seq1331 100 9e-18 seq3095 98.7 3e-17 seq2630 98.7 3e-17 seq2569 98.7 3e-17 seq2344 98.7 3e-17 seq1872 98.7 3e-17 >seq2314 Length=996981 Score = 104 bits (114), Expect = 7e-19 Identities = 66/72 (92%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 2769 GCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACC 2828 || ||| |||||||||||||||||| |||||||||||||||||||||||||||||||| | Sbjct 824136 GCCGAAATAGCTCAGTTGGGAGAGCGTTAGACTGAAGATCTAAAGGTCCCTGGTTCAATC 824077 Query 2829 CCGGGCTTCAGC 2840 ||||| ||| || Sbjct 824076 CCGGGTTTCGGC 824065 >seq1218 Length=724029 Score = 104 bits (114), Expect = 7e-19 Identities = 79/91 (87%), Gaps = 3/91 (3%) Strand=Plus/Minus Query 2753 TTGTAC-TGTGTTT--ATGGCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCT 2809 |||||| ||| ||| || || ||| |||||||||||||||||| ||||||||||||||| Sbjct 65785 TTGTACGTGTATTTCCATAGCCGAAATAGCTCAGTTGGGAGAGCGTTAGACTGAAGATCT 65726 Query 2810 AAAGGTCCCTGGTTCAACCCCGGGCTTCAGC 2840 ||||||||||||||| | |||||| ||| || Sbjct 65725 AAAGGTCCCTGGTTCGATCCCGGGTTTCGGC 65695 >seq2265 Length=480565 Score = 102 bits (112), Expect = 3e-18 Identities = 67/74 (91%), Gaps = 0/74 (0%) Strand=Plus/Minus Query 2767 TGGCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAA 2826 |||| ||| |||||||||||||||||| |||||||||||||||||||||||||||||| | Sbjct 286930 TGGCCGAAATAGCTCAGTTGGGAGAGCGTTAGACTGAAGATCTAAAGGTCCCTGGTTCGA 286871 Query 2827 CCCCGGGCTTCAGC 2840 |||||| ||| || Sbjct 286870 TCCCGGGTTTCGGC 286857 >seq1351 Length=825266 Score = 102 bits (112), Expect = 3e-18 Identities = 67/74 (91%), Gaps = 0/74 (0%) Strand=Plus/Plus Query 2767 TGGCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAA 2826 |||| ||| |||||||||||||||||| |||||||||||||||||||||||||||||| | Sbjct 658369 TGGCCGAAATAGCTCAGTTGGGAGAGCGTTAGACTGAAGATCTAAAGGTCCCTGGTTCGA 658428 Query 2827 CCCCGGGCTTCAGC 2840 |||||| ||| || Sbjct 658429 TCCCGGGTTTCGGC 658442 Score = 100 bits (110), Expect = 9e-18 Identities = 67/75 (89%), Gaps = 0/75 (0%) Strand=Plus/Plus Query 2766 ATGGCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCA 2825 || || ||| |||||||||||||||||| |||||||||||||||||||||||||||||| Sbjct 576490 ATCGCCGAAATAGCTCAGTTGGGAGAGCGTTAGACTGAAGATCTAAAGGTCCCTGGTTCG 576549 Query 2826 ACCCCGGGCTTCAGC 2840 | |||||| ||| || Sbjct 576550 ATCCCGGGTTTCGGC 576564 >seq1331 Length=931387 Score = 100 bits (110), Expect = 9e-18 Identities = 67/75 (89%), Gaps = 0/75 (0%) Strand=Plus/Plus Query 2766 ATGGCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCA 2825 || || ||| |||||||||||||||||| |||||||||||||||||||||||||||||| Sbjct 21294 ATCGCCGAAATAGCTCAGTTGGGAGAGCGTTAGACTGAAGATCTAAAGGTCCCTGGTTCG 21353 Query 2826 ACCCCGGGCTTCAGC 2840 | |||||| ||| || Sbjct 21354 ATCCCGGGTTTCGGC 21368 Score = 98.7 bits (108), Expect = 3e-17 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 2769 GCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACC 2828 || ||| |||||||||||||||||| |||||||||||||||||||||||||||||| | | Sbjct 25565 GCCGAAATAGCTCAGTTGGGAGAGCGTTAGACTGAAGATCTAAAGGTCCCTGGTTCGATC 25624 Query 2829 CCGGGCTTCAGC 2840 ||||| ||| || Sbjct 25625 CCGGGTTTCGGC 25636 >seq3095 Length=521029 Score = 98.7 bits (108), Expect = 3e-17 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 2769 GCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACC 2828 || ||| |||||||||||||||||| |||||||||||||||||||||||||||||||| | Sbjct 291983 GCCGAAATAGCTCAGTTGGGAGAGCGTTAGACTGAAGATCTAAAGGTCCCTGGTTCAATC 292042 Query 2829 CCGGGCTTCAGC 2840 || || ||| || Sbjct 292043 CCTGGTTTCGGC 292054 >seq2630 Length=1043321 Score = 98.7 bits (108), Expect = 3e-17 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 2769 GCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACC 2828 || ||| |||||||||||||||||| |||||||||||||||||||||||| ||||||| | Sbjct 400882 GCCGAAATAGCTCAGTTGGGAGAGCGTTAGACTGAAGATCTAAAGGTCCCCGGTTCAATC 400941 Query 2829 CCGGGCTTCAGC 2840 ||||| ||| || Sbjct 400942 CCGGGTTTCGGC 400953 >seq2569 Length=621203 Score = 98.7 bits (108), Expect = 3e-17 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 2769 GCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACC 2828 || ||| |||||||||||||||||| |||||||||||||||||||||||||||||| | | Sbjct 500729 GCCGAAATAGCTCAGTTGGGAGAGCGTTAGACTGAAGATCTAAAGGTCCCTGGTTCGATC 500670 Query 2829 CCGGGCTTCAGC 2840 ||||| ||| || Sbjct 500669 CCGGGTTTCGGC 500658 >seq2344 Length=252921 Score = 98.7 bits (108), Expect = 3e-17 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 2769 GCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACC 2828 || ||| |||||||||||||||||| |||||||||||||||||||||||||||||| | | Sbjct 44635 GCCGAAATAGCTCAGTTGGGAGAGCGTTAGACTGAAGATCTAAAGGTCCCTGGTTCGATC 44694 Query 2829 CCGGGCTTCAGC 2840 ||||| ||| || Sbjct 44695 CCGGGTTTCGGC 44706 >seq1872 Length=441285 Score = 98.7 bits (108), Expect = 3e-17 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 2769 GCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACC 2828 || ||| |||||||||||||||||| |||||||||||||||||||||||| ||||||| | Sbjct 188910 GCCGAAATAGCTCAGTTGGGAGAGCGTTAGACTGAAGATCTAAAGGTCCCCGGTTCAATC 188969 Query 2829 CCGGGCTTCAGC 2840 ||||| ||| || Sbjct 188970 CCGGGTTTCGGC 188981 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 15848853013305