Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Heliconius_20melpomene_20melpomene_20[genbank_20GCA_5F000313835.2_20 2012-03-01] 4,309 sequences; 273,786,188 total letters Query= NC_027778.1 Length=124244 Score E Sequences producing significant alignments: (Bits) Value seq1351 102 6e-17 seq3482 93.3 3e-14 >seq1351 Length=825266 Score = 102 bits (112), Expect = 6e-17 Identities = 142/197 (72%), Gaps = 4/197 (2%) Strand=Plus/Minus Query 43796 GACTTAGCACATTGGATTGCATTAAAACCACAAGAAAAACATTTTAT--ATCTTTGGTTT 43853 ||||||||| ||||| |||||||| || ||||||||||| | | | |||| Sbjct 602444 GACTTAGCAGATTGGGAGACATTAAAAGATTGTGAGAAACATTTTATCAAGCAT--GTTT 602387 Query 43854 TGGCGTTTTTTGCTGCGAGCGACGGGATAGTCAATGAAAATTTGGTTAGTCGGTTTGCGC 43913 | || || ||||| || || || || || ||||| || ||||| || ||| | | Sbjct 602386 TAGCATTCTTTGCGGCTTCTGATGGTATTGTTAATGAGAACTTGGTGGAGCGTTTTTCAC 602327 Query 43914 AAGAAGTTCAATTACCAGAAGCACGATGTTTTTATGGGTTTCAAATTGCCATAGAAAATA 43973 |||| |||||| | | ||||| | || || ||||| ||||||||||| || |||||| Sbjct 602326 AAGAGGTTCAAGTGACTGAAGCCAGGTGCTTCTATGGTTTTCAAATTGCTATGGAAAATG 602267 Query 43974 TTCATTCGGAAATGTAC 43990 ||||||| || |||||| Sbjct 602266 TTCATTCAGAGATGTAC 602250 >seq3482 Length=277542 Score = 93.3 bits (102), Expect = 3e-14 Identities = 109/145 (75%), Gaps = 2/145 (1%) Strand=Plus/Plus Query 115031 AATGGTCATACGTGAAGGAAAAGCATGCGGATTAATAATCAAGTCTGGCACTAACCCGTC 115090 ||| |||||||| ||||| | ||||| ||||||||||| | ||||| ||| || || Sbjct 266317 AATTGTCATACGAGAAGGGATGGCATGGGGATTAATAATGATATCTGGTGTTAAGCCCTC 266376 Query 115091 GGCTGTGAACGGCATGTCGTGCTGATCG-TACATCATTCCACAAGTTCCTTTTTGAGCGG 115149 | ||| |||||||| || | || ||| ||| |||||||| |||||||||||| || Sbjct 266377 GCATGTAAACGGCATATC-TTCTTGTCGATACTGGATTCCACAGGTTCCTTTTTGACCGT 266435 Query 115150 TAAACGATGCAAATTTATCACCAAT 115174 | || ||||| ||||| ||||| Sbjct 266436 GACGTGAAGCAAACTTATCTCCAAT 266460 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397435127225545