Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Heliconius_20melpomene_20melpomene_20[genbank_20GCA_5F000313835.2_20 2012-03-01] 4,309 sequences; 273,786,188 total letters Query= NC_028092.1 Length=193301 Score E Sequences producing significant alignments: (Bits) Value seq3345 122 1e-22 >seq3345 Length=207354 Score = 122 bits (134), Expect = 1e-22 Identities = 463/722 (64%), Gaps = 30/722 (4%) Strand=Plus/Minus Query 118182 TAGATATTGGTCGTGTATGGCTCAAAGCACTCATTGTTACCCAAGATTTGGGCTGTGGAG 118241 || ||||| | || | || ||||| | ||| |||| || | ||||| || || ||| Sbjct 112999 TAAATATTTGATGTAAAGGGTTCAAAAGATTCAGTGTTGCCAAGAATTTGTGCAGTAGAG 112940 Query 118242 GCTGTGGGCATGGGTGCCATGAGAAGGCTGTTACGGAGACCCT-TTTCCCTAATGCGTTC 118300 || || ||||| || || || | || || || | ||| | ||| ||| | ||| Sbjct 112939 GCAGTCGGCATTGGAGCTATCAATAGAGAATTGCGCAAACCATGTTTTGCTA-TCTTTTC 112881 Query 118301 CTTGAGAGCGTCCCAGTC----------GTAGTTGAGCTTTGTCTCCCCCTGCCACATAT 118350 ||||| || ||||||| |||| ||| |||||| |||||||| Sbjct 112880 TTTGAGGGCAGCCCAGTCCCAAAGGTCTGTAG--GAGTTTTGTC--------CCACATAT 112831 Query 118351 CAAACTGGAGGATACCTTGGGACGCTGGCGATCCCTCAAATGTCTCATATGGGCCCTCAA 118410 || ||||||||||||||||| ||||| || | | |||| |||| || || Sbjct 112830 CATACTGGAGGATACCTTGGCTTGCTGGACTCCCTTGATATGTGCTGTATGCACCTTCTT 112771 Query 118411 CCTCCGCCAATTCGGAGCTCGCCTCGAGGGCTGCGTGATACATTGTTTCAAAAATGCGAG 118470 || || ||||| | || || || | || | | ||| ||||||||||| || | Sbjct 112770 TTTCAGCTAATTCACAACTAGCTTCTAATGCACCATAATAAATTGTTTCAAATATTTGTT 112711 Query 118471 CATTCATTGCCTTGGCCTCGTCGGAATCAAACGCGAGTCGGCACAAAATAAATACATCCG 118530 ||| | | || | || || | | | || ||| | ||| |||| | Sbjct 112710 GATTGAGAAGTATTGCTTTCTCACTTTCGTAAGAAATTCTCATCAACACAAACGCATCTG 112651 Query 118531 CGAGACCTTGGACACCGAGGCCAATTGGGCGATGTCTCATATTAGACTTCCGAGCGGTCT 118590 | | || || ||||| | ||||| || | |||||||||||| || | || Sbjct 112650 CCATGCCCTGAACACCAATACCAATAGGTCTATGTCTCATATTTGAAGTTTTTGCTTCAG 112591 Query 118591 CCACGGGATAAAAATTCCTATCGATAACCCTATTTAGATTTTTGGTGACAACCTTTGTGA 118650 || ||||||||||| ||| ||||| | |||| ||||| || |||| |||||||| Sbjct 112590 GGACAGGATAAAAATTAACATCAATAACTTTGTTTAAATTTTGAGTTACAATCTTTGTGA 112531 Query 118651 TTTCATGAAGCTTTTCGTAATCAAAACTGCGAGTCTCTTCATTGACATACTTAGGAAGGG 118710 |||| | | |||| ||| ||| || | | | |||| ||| || | ||| | Sbjct 112530 TTTCTTTTAATTTTTTAAAATTAAATCT---ATTATTTTCA---ACAAACATGTTAAGTG 112477 Query 118711 CGATTGACGCCAGATTACACACAGAGGTCTCATCCTTATCAGTGTACTCTATAATTTCCG 118770 | || || || || || ||||| | ||||| | |||||| | | || || | Sbjct 112476 CTATGGAAGCAAGGTTGCACACTGCCACTTCATCTTCTGAAGTGTATTGCACAACCTCAG 112417 Query 118771 TGCACAAGTTTG-AACTCTTAATGGTGCCCAAGTTCTTTTGATTTGACTTTGTGTTACAC 118829 |||| ||| ||| || ||||| ||||| | || |||||||| |||| ||||||| Sbjct 112416 TGCA-AAGATTGCTACATTTAATAGTGCCAAGATTTTTTTGATTACTCTTTCTGTTACAA 112358 Query 118830 GCATCCTTGTAAAGCATGTATGGCGTCCCCGTCTCCGTTTGGGACTTGAGAATAGCCTTC 118889 |||||||| || | ||||||||| || || ||||| ||||| | | ||| | |||| Sbjct 112357 GCATCCTTATACAACATGTATGGTGTACCAGTCTCTACTTGGGCTTCTATAATTGACTTC 112298 Query 118890 CA 118891 || Sbjct 112297 CA 112296 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 618401889534040