Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Heliconius_20melpomene_20melpomene_20[genbank_20GCA_5F000313835.2_20 2012-03-01] 4,309 sequences; 273,786,188 total letters Query= NC_028093.1 Length=182309 Score E Sequences producing significant alignments: (Bits) Value seq3345 134 2e-26 >seq3345 Length=207354 Score = 134 bits (148), Expect = 2e-26 Identities = 468/725 (65%), Gaps = 34/725 (5%) Strand=Plus/Plus Query 104915 GAGACTGGTACACCATACATGCTTTACAAAGACGCCTGTAACCAAAAGAGTAATCAAAAG 104974 ||||||||||||||||||||| | || || || || |||||| ||||||||||||||| Sbjct 112323 GAGACTGGTACACCATACATGTTGTATAAGGATGCTTGTAACAGAAAGAGTAATCAAAAA 112382 Query 104975 AATTTGGGTGTGATCAAGAGTTCCAATCTCTGTACAGAAATCTTGGAATTTACAGACAAA 105034 ||| | || || || || |||||| || || || | || ||| || || Sbjct 112383 AATCTTGGCACTATTAAATGTAGCAATCTTTGCACTGAGGTTGTGCAATACACTTCAGAA 112442 Query 105035 GATGAGACGGCTGTGTGTAACCTCGCATCAATCGCTCTCCCCAAGTATGTGGATCCAGAG 105094 ||||| ||| ||||| ||||| || || || || || || || ||| || Sbjct 112443 GATGAAGTGGCAGTGTGCAACCTTGCTTCCATAGCACTTAACATGTTTGT------TGAA 112496 Query 105095 ACAAAGACATTTGATTATGAAAAACTCCACGAAGTTACGAAAACTGTCACCAAAAACCTA 105154 | || | |||| ||| | ||||| | | ||| | || || | ||| || |||| || Sbjct 112497 AATAATAGATTTAATTTTAAAAAATTAAAAGAAATCACAAAGATTGTAACTCAAAATTTA 112556 Query 105155 AACAGAGTTATTGATAGAAATTTTTACCCCGT---TGAGACTGCTCGTAAATCTAATATG 105211 |||| |||||||||| |||||||| || || ||| || | || |||||| Sbjct 112557 AACAAAGTTATTGATGTTAATTTTTATCCTGTCCCTGA---AGCAAAAACTTCAAATATG 112613 Query 105212 AGACACCGTCCAATTGGTCTCGGTGTTCAGGGTCTCGCGGATGTATTCATTCTTTGTCGC 105271 ||||| | || |||||| | ||||||||||| | || |||| || | ||| | Sbjct 112614 AGACATAGACCTATTGGTATTGGTGTTCAGGGCATGGCAGATGCGTT-----TGTGTTGA 112668 Query 105272 CACGCATTTGATTCCGACGAAGCGAAGGAAA------TCAATGCGCGCATATTTGAGACC 105325 | |||| || ||| | ||| | || ||||| | |||||||| || Sbjct 112669 TGAGAATTT-CTTACGAAAGTGAGAAAGCAATACTTCTCAATCAACAAATATTTGAAACA 112727 Query 105326 ATGTATCACGCCGCTCTTGAGGCGAGTTCAGAGTTGGCAGAGGTTGATGGTCCATATGAA 105385 || ||| | | || | || || |||| || || || || || ||| |||| Sbjct 112728 ATTTATTATGGTGCATTAGAAGCTAGTTGTGAATTAGCTGAAAAAGAAGGTGCATACAGC 112787 Query 105386 ACCTTTGAGGGTTCTCCAGCTTCACAAGGGGTGCTTCAATTTGATATGTGGG---AAGGT 105442 || | | | || |||||| ||||| | || || | ||||||||||| || | Sbjct 112788 ACATATCAAGGGAGTCCAGCAAGCCAAGGTATCCTCCAGTATGATATGTGGGACAAAACT 112847 Query 105443 GAGACCAAGCTTCACTACGACTGGGAAGCTCTCAAGGAACGCAT--CAAGGAGAAGGGTC 105500 || | ||| | ||||||| || ||||| ||| || ||| | | ||| Sbjct 112848 CCTACAGACCTT---TGGGACTGGGCTGCCCTCAAAGAAAAGATAGCAA--AACATGGTT 112902 Query 105501 TTCGTAACAGTCTCCTCATGGCTCCAATGCCAACAGCCTCCACCGCACAAATCTTGGGTA 105560 | || || ||| | || ||||||||||| || ||||| || |||||||| | || | Sbjct 112903 TGCGCAATTCTCTATTGATAGCTCCAATGCCGACTGCCTCTACTGCACAAATTCTTGGCA 112962 Query 105561 ATAATGAATGCTTTGAACCCTACACGACGAACATCTATCTGAGAAGAACCCTCGCGGGAG 105620 | | ||||| |||||||||| || | || || || | |||||| | | | |||| Sbjct 112963 ACACTGAATCTTTTGAACCCTTTACATCAAATATTTACCAAAGAAGAGTCTTATCTGGAG 113022 Query 105621 AGTTT 105625 | ||| Sbjct 113023 AATTT 113027 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 583229384115160