Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Heliconius_20melpomene_20melpomene_20[genbank_20GCA_5F000313835.2_20 2012-03-01] 4,309 sequences; 273,786,188 total letters Query= NC_028110.1 Length=171045 Score E Sequences producing significant alignments: (Bits) Value seq1141 149 7e-31 seq2685 105 7e-18 >seq1141 Length=95761 Score = 149 bits (164), Expect = 7e-31 Identities = 204/283 (72%), Gaps = 13/283 (5%) Strand=Plus/Minus Query 124494 AACTCACGGATGCTGTGCGTCTCACCCGTGCCAATCACGAAATCTTCGGGAATCGACTGC 124553 ||||| || | |||||||| ||| |||||| | | |||||| || || || |||| Sbjct 69811 AACTCGCGCACGCTGTGCGCCTCGCCCGTGGCTACCACGAAGTCCTCTGGTGCGTCCTGC 69752 Query 124554 TGCAACATAAGCCACATGGCTTGGACGTAGTCCTCTGCGTGCCCCCAGTCGCGCTTGGCA 124613 |||| ||| ||||||||||| | |||||||| ||||| |||||||| |||||| Sbjct 69751 TGCAGCATGAGCCACATGGCCTCCACGTAGTCGCGCGCGTGGCCCCAGTCACGCTTGCTG 69692 Query 124614 TCCAGGTTTCCGAGCTCGATTGGC-----TTGGCCGTCTTGTTCCACTCCGCCAAACCCA 124668 |||||||| |||||||||| || ||||| ||| || || | ||| Sbjct 69691 TCCAGGTTGCCGAGCTCGAGGTGCGACATGAGGCCGAGGTGT--ATCTTGGCGACGCCCC 69634 Query 124669 GTGTAATCTTGCGCGTCACAAA---CTCGGAACCGCGTCGCTCAGACTCGTGGTTGAACA 124725 | || |||||||||||||| || |||| ||||| ||| | |||||||||||||| Sbjct 69633 GCGTGATCTTGCGCGTCACGAAGTTCTCG---CCGCGGCGCGGACTCTCGTGGTTGAACA 69577 Query 124726 GAATGCCAGTACACGCAAACATCCCGTACGACTCGCGGTAGTT 124768 | | || | ||||| ||||| ||||||| ||||||||||| Sbjct 69576 GCACCCCGTTGCACGCGAACATGCCGTACGCTTCGCGGTAGTT 69534 Score = 140 bits (154), Expect = 4e-28 Identities = 203/282 (72%), Gaps = 11/282 (4%) Strand=Plus/Minus Query 158944 AACTCGCGGATGCTGTGCGTCTCTCCAGTCGCAATCACAAAGTCCTCTGGACCGGGCTGT 159003 |||||||| | |||||||| ||| || || || | ||| ||||||||||| || ||| Sbjct 69811 AACTCGCGCACGCTGTGCGCCTCGCCCGTGGCTACCACGAAGTCCTCTGGTGCGTCCTGC 69752 Query 159004 TGGAGCATGAGCCACATGGCCTCGACGTAATCCTGCGCGTGACCCCAGTCGCGCTTGGCA 159063 || |||||||||||||||||||| ||||| || ||||||| |||||||| |||||| Sbjct 69751 TGCAGCATGAGCCACATGGCCTCCACGTAGTCGCGCGCGTGGCCCCAGTCACGCTTGCTG 69692 Query 159064 TCCATGTTCCCGAGCTCGA----TGAC-TTTTCCAGACTTTTTCCACTCAGCCAGACCGA 159118 |||| ||| |||||||||| ||| | | || | | || || | || Sbjct 69691 TCCAGGTTGCCGAGCTCGAGGTGCGACATGAGGCCGAGGTGT--ATCTTGGCGACGCCCC 69634 Query 159119 GCGTGATCTTGCGCGTCACAAACTCTGCTCCGCGCCGTTCCGA--CTCATGGTTAAACAG 159176 ||||||||||||||||||| || | | ||||| || | || ||| ||||| ||||| Sbjct 69633 GCGTGATCTTGCGCGTCACGAAGTTCTCGCCGCGGCG--CGGACTCTCGTGGTTGAACAG 69576 Query 159177 AATGCCGGTACAAGCGAACAGGTTATAGGACTCGCGGTAATT 159218 | ||| | || ||||||| | || | |||||||| || Sbjct 69575 CACCCCGTTGCACGCGAACATGCCGTACGCTTCGCGGTAGTT 69534 >seq2685 Length=83923 Score = 105 bits (116), Expect = 7e-18 Identities = 109/143 (76%), Gaps = 0/143 (0%) Strand=Plus/Plus Query 117287 GTCCACGGTGCTAGGCGAGTGAAAATGTAACGAGAGCTTGCAGCATCCTTGCCACCAGCA 117346 ||| |||| | | | | |||||||||||||| | ||| |||||||| ||||| |||| Sbjct 33919 GTCAACGGGGACATGAGTGTGAAAATGTAACGGGGGCTCGCAGCATCTTTGCCGCCAGAC 33978 Query 117347 AGACGCGTACCGAATTGTCCACTCGGCTCCAAGAGGTTCAGGTTGTTGGCGCCCACAAAG 117406 || || ||||| || || |||| || ||||| ||||| | |||||| | |||||| || Sbjct 33979 AGGCGGGTACCAAACTGACCACGGGGTTCCAATAGGTTAATGTTGTTCGACCCCACATAG 34038 Query 117407 TTTTGAGCCAAGTTGACAATCGT 117429 |||||||||| || || || || Sbjct 34039 TTTTGAGCCAGATTCACTATTGT 34061 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 547186525578200