Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Heliconius_20melpomene_20melpomene_20[genbank_20GCA_5F000313835.2_20 2012-03-01] 4,309 sequences; 273,786,188 total letters Query= NC_028113.1 Length=35685 Score E Sequences producing significant alignments: (Bits) Value seq3063 365 1e-96 >seq3063 Length=7092 Score = 365 bits (404), Expect = 1e-96 Identities = 304/372 (82%), Gaps = 0/372 (0%) Strand=Plus/Plus Query 11061 AGCTTTAACAACCACGTGCGCACGCTGGTGGCGCGCGAGGAGGTGGCCATCGGGCTGATG 11120 |||||||||||||||||||||||||| |||||||||||||||||||| || || |||||| Sbjct 6721 AGCTTTAACAACCACGTGCGCACGCTTGTGGCGCGCGAGGAGGTGGCTATAGGACTGATG 6780 Query 11121 CACCTGTGGGACTTTGTGGAGGCGTTCGTGCACAACCCCGGCAGCAAGGCGCTGACGGCG 11180 || |||||||||||||| ||| | | ||| ||||| |||||| |||| | |||| Sbjct 6781 CATCTGTGGGACTTTGTAAGCGCGCTGGAGCAAAACCCAAATAGCAAGCCGCTCATGGCG 6840 Query 11181 CAGCTGTTTCTAATCGTGCAGCACAGTCGCGACAACGAGCTGTTTCGCGACGCCCTGCTA 11240 |||||||| || || ||||||||||| | ||||||||| || | || || |||||| Sbjct 6841 CAGCTGTTCCTTATAGTGCAGCACAGCAGGGACAACGAGGCATTCAGGGATGCGCTGCTA 6900 Query 11241 AACATCGCCGAGCCCGAGGGCCGGTGGCTGCTGGACCTGATTAACATCTTGCAGAGCATT 11300 ||||| | |||||||||||||| |||||||| || |||| ||||| |||||||||| Sbjct 6901 AACATAGTAGAGCCCGAGGGCCGCTGGCTGCTCGATTTGATAAACATTCTGCAGAGCATA 6960 Query 11301 GTGGTGCAAGAGCGCTCGCTCAGCCTGGCCGACAAGGTGGCGGCCATCAACTATTCGATG 11360 |||||||| |||||| | |||||||| ||||||||||| ||||| |||||||| ||| Sbjct 6961 GTGGTGCAGGAGCGCAGCTTGAGCCTGGCTGACAAGGTGGCCGCCATTAACTATTCCATG 7020 Query 11361 CTGAGCCTGGGCAAGTTTTACGCGCGCAAAATCTACCGCAGCCCGTACGTGCCCATCGAT 11420 || || ||||||||||||||||| ||||| || |||| | ||| ||||| ||||| || Sbjct 7021 CTCAGTCTGGGCAAGTTTTACGCCCGCAAGATATACCATACCCCTTACGTTCCCATAGAC 7080 Query 11421 AAGGAGGTGAAG 11432 |||||||| ||| Sbjct 7081 AAGGAGGTAAAG 7092 Score = 125 bits (138), Expect = 2e-24 Identities = 125/162 (77%), Gaps = 0/162 (0%) Strand=Plus/Plus Query 15271 CAAGATGTACGGGGGTGCCAAGCGCCGCTCCAGCGAGCACCCGGTGCGCGTCAGAGGCCA 15330 |||||||| || || || ||| |||||| | | ||||| |||||||| | || || Sbjct 8 CAAGATGTTTGGCGGGGCAAAGAAGCGCTCCGACCAACACCCAGTGCGCGTGCGCGGGCA 67 Query 15331 CTTCCGCGCGCCCTGGGGGGCCCACAAGCGCGGCCGCACGGGGCGCACCACGGTCGACGA 15390 || ||||||||||||||| || ||||| ||||||||||| ||||||||||| ||||| || Sbjct 68 CTACCGCGCGCCCTGGGGCGCGCACAAACGCGGCCGCACTGGGCGCACCACCGTCGATGA 127 Query 15391 GGTCATCGACAGCGTAGTGGCCGATGCCGCCAACTACACGCC 15432 | ||| ||| || |||| || || |||||||||||| Sbjct 128 CGCCATTGACGCGGTGGTGGAGGAGGCGCGCAACTACACGCC 169 Score = 107 bits (118), Expect = 4e-19 Identities = 160/225 (71%), Gaps = 9/225 (4%) Strand=Plus/Plus Query 15980 CGACGCGGTAGAGTTTGTGCGCGCCACGGCCCCCAGGCGGCGGGTGCAGTGGAAGGGTCG 16039 ||||| ||| || | ||| ||| || || |||||||||||||| |||||||| ||||| Sbjct 764 CGACGAGGTGGAACTGCTGCACGCAACCGCGCCCAGGCGGCGGGTACAGTGGAAAGGTCG 823 Query 16040 GCGCGTGCGCCGCGTGTTGCGCCCAGGCACGGCGGTGGTGTTTTCGCCCGGCGAGAGGTC 16099 ||||| | || || ||||| || ||||| | || || ||| ||||||| ||| | || Sbjct 824 ACGCGTAAGACGTGTTTTGCGACCCGGCACCACCGTAGTTTTTACGCCCGGTGAGCGCTC 883 Query 16100 GGCGCTGCGGGCGCTGAAGCGTGACTACGACGAAGTGTACGCGGACGAAGACGTGCTGGA 16159 | || | ||||| | || || || ||||||| ||||| ||| |||| || Sbjct 884 CAC---CCGCACCTACAAGCGCGTGTATGATGAGGTGTACGGCGACGAGGACCTGCTTGA 940 Query 16160 GCAGGC---GGAGCGACAAGAGGGAGAGTTTGCTTACGGCAAGCG 16201 |||||| ||||| | || |||||||| ||||| ||||| Sbjct 941 GCAGGCCAACGAGCGCC---TCGGGGAGTTTGCCTACGGAAAGCG 982 Score = 87.8 bits (96), Expect = 4e-13 Identities = 184/269 (68%), Gaps = 23/269 (9%) Strand=Plus/Plus Query 15641 CGCCGGGCGGCCCGTCGC-GCGGCCGCTGCCATCACTCGCATGTCCCGAGGGCGCCGCGG 15699 || || |||||| | ||| || ||||| ||||| | | ||| | | || ||| | || Sbjct 417 CGACGAGCGGCC-GCCGCAGCAGCCGCGGCCATTAGTGCTATGACTCAGGGTCGCAGGGG 475 Query 15700 TAACGTCTACTGGGTGCGCGACTCCGTGACGGGGTTGCGTGTGCCCGTGCGCTTCCGCCC 15759 ||||| ||||||||||||||||| | || |||| |||||||||||| |||||| Sbjct 476 CAACGTGTACTGGGTGCGCGACTCGGAATTCGGCCTGCGCGTGCCCGTGCGCACCCGCCC 535 Query 15760 TCCTCG----------GCAGTAAAAAACCACACTCAG-CT-GTGC-GTCTTGTGTGTTCA 15806 || || ||| ||||||| ||| || || || | || | ||| | || Sbjct 536 CCCGCGCAACTAGATTGCAAGAAAAAAC--TACTTAGACTCGTACTGTTGTATGTATCCA 593 Query 15807 GCGGCGGCGTCG------GACGGCATGAGCAAGCGCAAGTTTAAAGAAGAATTGCTGCAG 15860 ||||||||| || || | ||| ||||||||| | |||||||| |||| ||| Sbjct 594 GCGGCGGCGGCGCGCAACGAAGCTATGTCCAAGCGCAAAATCAAAGAAGAGATGCTCCAG 653 Query 15861 GCCGTAGCGCCCGAGATTTACGGGCCGCC 15889 | | | ||||| ||||| || || || || Sbjct 654 GTCATCGCGCCGGAGATCTATGGCCCCCC 682 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 114064563088926