Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Heliconius_20melpomene_20melpomene_20[genbank_20GCA_5F000313835.2_20
2012-03-01] 4,309 sequences; 273,786,188 total letters
Query= NC_028491.1
Length=98392
Score E
Sequences producing significant alignments: (Bits) Value
seq2787 122 5e-23
seq3424 120 2e-22
seq2396 100 2e-16
seq1305 100 2e-16
>seq2787
Length=76071
Score = 122 bits (134), Expect = 5e-23
Identities = 169/234 (72%), Gaps = 2/234 (1%)
Strand=Plus/Minus
Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAA 34539
|| || | ||||||||| ||||| || ||||| || |||||||| ||||| || |||
Sbjct 39733 CCACCACGAAGACGCAATACCAAGTGAAGAGTAGATTCTTTTTGAATATTATAGTCAGAA 39674
Query 34540 AGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGC 34599
|| || || ||||||| | ||| || || || || || ||||| ||||| || || ||
Sbjct 39673 AGAGTGCGTCCGTCTTCCAATTGCTTTCCAGCGAAAATCAAACGTTGTTGATCTGGAGGA 39614
Query 34600 ACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGATAA-AATTGTGTCTTCGCTCTCCAC 34658
| || ||||||||| ||| ||| | ||| || | ||| || || || ||
Sbjct 39613 ATGCCTTCCTTGTCT-TGAATTTTGGCTTTTACATTTTCAATAGTATCGGAAGGTTCAAC 39555
Query 34659 TTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCATGTTGAT 34712
||||| || || |||||||| || | ||||||||||| |||||||| |||||
Sbjct 39554 TTCCAAAGTAATGGTTTTACCCGTAAGTGTTTTCACAAAGATCTGCATTTTGAT 39501
Score = 107 bits (118), Expect = 1e-18
Identities = 160/227 (70%), Gaps = 0/227 (0%)
Strand=Plus/Minus
Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAA 34539
|| |||| ||||||| || | ||| || || |||||| || ||||| || || ||
Sbjct 40417 CCACCTCGCAGACGCAGTACTAGATGAAGGGTAGACTCCTTCTGGATGTTGTAGTCAGAC 40358
Query 34540 AGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGC 34599
|| || || | ||||| | ||| ||||| ||||| || | |||||| || || || ||
Sbjct 40357 AGGGTGCGACCATCTTCCAATTGCTTACCAGCAAAGATAAGACGCTGCTGATCAGGTGGG 40298
Query 34600 ACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGATAAAATTGTGTCTTCGCTCTCCACT 34659
| ||||| |||||| ||| || ||||| | ||| || || | ||||||
Sbjct 40297 ATGCCCTCTTTGTCTTGGATTTTAGCTTTTACATTTTCAATAGTATCAGAGGGTTCCACT 40238
Query 34660 TCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706
|||| ||| || || || || |||| ||||| ||||||||||||||
Sbjct 40237 TCCAGGGTAATGGTCTTTCCAGTTAGGGTTTTAACAAAAATCTGCAT 40191
Score = 98.7 bits (108), Expect = 6e-16
Identities = 158/227 (70%), Gaps = 0/227 (0%)
Strand=Plus/Minus
Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAA 34539
||||| | ||| ||||| || ||||| || || ||||||||||| |||||||| ||
Sbjct 39961 CCGCCACGAAGCCGCAATACTAAATGTAGGGTAGATTCCTTTTGAATATTATAATCAGAT 39902
Query 34540 AGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGC 34599
| ||| || | ||||| |||||||| || ||||| || | | |||||| || || ||
Sbjct 39901 AATGTACGGCCATCTTCTAGTTGTTTTCCAGCAAAAATAAGCCTCTGTTGATCTGGGGGA 39842
Query 34600 ACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGATAAAATTGTGTCTTCGCTCTCCACT 34659
| ||||| |||||| ||||||| || | | || ||||| ||| ||
Sbjct 39841 ATACCCTCTTTGTCTTGGATCTTTGCCTTCACATTTTCGATAGTGTCGGACGGCTCTACC 39782
Query 34660 TCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706
|| | || || ||||| || || | || || ||||| ||||||||
Sbjct 39781 TCTAAAGTGATGGTTTTTCCTGTAAGAGTCTTAACAAAGATCTGCAT 39735
Score = 98.7 bits (108), Expect = 6e-16
Identities = 160/228 (70%), Gaps = 2/228 (1%)
Strand=Plus/Minus
Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAA 34539
|| |||| ||||| | ||||| || || || ||| || || || || || || ||
Sbjct 41101 CCTCCTCGGAGACGGAGTACCAAGTGAAGGGTCGACTCTTTCTGGATATTGTAGTCAGAC 41042
Query 34540 AGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGC 34599
|| || || | ||||| ||||||||||| || || || | ||| ||||| || || ||
Sbjct 41041 AGGGTGCGGCCATCTTCCAGTTGTTTACCAGCGAAGATAAGACGTTGTTGATCTGGAGGA 40982
Query 34600 ACTCCCTCCTTGTCTGTGATCTTTTGTTTTAAC-GATAAAATTGTGTCTTCGCTCTCCAC 34658
| ||| ||||| ||| ||| || | |||||| | ||| |||||| ||| ||
Sbjct 40981 ATTCCTTCCTTATCT-TGAATCTTAGCTTTAACATTTTCAATGGTGTCTGATGGCTCAAC 40923
Query 34659 TTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706
||||| ||||| ||||| || || | ||||| ||||| || |||||
Sbjct 40922 TTCCAAAGTTATTGTTTTTCCAGTAAGTGTTTTGACAAATATTTGCAT 40875
Score = 89.7 bits (98), Expect = 3e-13
Identities = 158/228 (69%), Gaps = 2/228 (1%)
Strand=Plus/Minus
Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAA 34539
|| || | |||||| | || ||||| | ||| || ||||| |||||||| || ||
Sbjct 41557 CCACCACGAAGACGAAGTACTAAATGCAAAGTAGATTCTTTTTGGATGTTATAGTCCGAC 41498
Query 34540 AGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGC 34599
|| || || | || || | |||||||| ||||| || | |||||||||||| || ||
Sbjct 41497 AGAGTGCGGCCATCCTCTAACTGTTTACCAGCAAAGATGAGACGCTGTTGGTCTGGGGGA 41438
Query 34600 ACTCCCTCCTTGTCTGTGATCTTTTGTTTTAAC-GATAAAATTGTGTCTTCGCTCTCCAC 34658
| |||||||| ||| |||| || | ||||| | || ||||| ||||||
Sbjct 41437 ATGCCCTCCTTATCTTGGATC-TTAGCCTTAACATTTTCGATAGTGTCGGATGGCTCCAC 41379
Query 34659 TTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706
|||| || || || || || || | || || ||||| ||||||||
Sbjct 41378 CTCCAAAGTGATGGTCTTCCCAGTAAGAGTCTTAACAAAGATCTGCAT 41331
>seq3424
Length=494560
Score = 120 bits (132), Expect = 2e-22
Identities = 165/228 (72%), Gaps = 2/228 (1%)
Strand=Plus/Minus
Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAA 34539
|| ||||| |||||||| || ||||| | ||| |||||| || || ||||| || ||
Sbjct 290205 CCACCTCTTAGACGCAAAACTAAATGCAAAGTAGACTCCTTCTGGATATTATAGTCCGAC 290146
Query 34540 AGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGC 34599
| ||| || | ||||| ||||| || ||||| || || | | ||||| || || ||
Sbjct 290145 AATGTGCGTCCATCTTCCAGTTGCTTTCCGGCGAAAATCAGTCTTTGTTGATCTGGAGGA 290086
Query 34600 ACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGATAAA-ATTGTGTCTTCGCTCTCCAC 34658
| || ||||||||| |||||| | ||||| | |||||||| ||||||
Sbjct 290085 ATGCCTTCCTTGTCTTGAATCTTT-GCCTTAACATTTTCTATTGTGTCAGAAGCCTCCAC 290027
Query 34659 TTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706
||||| ||| || ||||| || || || |||||||||||||| |||||
Sbjct 290026 TTCCAAGGTAATAGTTTTGCCAGTCAATGTTTTCACAAAAATTTGCAT 289979
Score = 116 bits (128), Expect = 2e-21
Identities = 164/228 (72%), Gaps = 2/228 (1%)
Strand=Plus/Minus
Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAA 34539
|| || ||||| |||| |||||| || | ||| ||||||||||| |||||||||||
Sbjct 289293 CCACCCCTAAGGCGCAGCACCAAGTGCAAAGTAGATTCCTTTTGAATATTATAATCTGAC 289234
Query 34540 AGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGC 34599
||||| || | ||||| || ||||| || ||||| || | | ||||||||| || ||
Sbjct 289233 AGTGTACGTCCATCTTCCAGCTGTTTTCCTGCAAAAATAAGCCTCTGTTGGTCAGGAGGA 289174
Query 34600 ACTCCCTCCTTGTCTGTGATCTTTTGTTTTAAC-GATAAAATTGTGTCTTCGCTCTCCAC 34658
| || || |||||| ||| ||||| ||||| | ||||| || ||||||
Sbjct 289173 ATGCCTTCTTTGTCT-TGAATTTTTGCCTTAACATTTTCTATTGTATCAGAAGCCTCCAC 289115
Query 34659 TTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706
||||| || || ||||| || || | || || ||||| || |||||
Sbjct 289114 TTCCAATGTGATAGTTTTGCCAGTCAGTGTCTTTACAAATATTTGCAT 289067
>seq2396
Length=191974
Score = 100 bits (110), Expect = 2e-16
Identities = 127/173 (73%), Gaps = 4/173 (2%)
Strand=Plus/Plus
Query 46826 GGATGGCCCGTCAC--TTTTATTACACCCGAAGTGATGGCACGTAACGGATTTTATTATC 46883
|||||||||||||| ||||||| ||||||| | || | || || || |||||||
Sbjct 136223 GGATGGCCCGTCACATTTTTATT--ACCCGAATCACTCGCGAGGAATGGCTTCTATTATC 136280
Query 46884 TTGGAAGAGGTGATGAAGTTCGATGCGCCTTTTGCAAGGTTGAGATCATGCGTTGGGAAG 46943
| || | || |||||||| || ||||| ||||| || || || || ||| |||| |
Sbjct 136281 TGGGCCGCGGCGATGAAGTACGCTGCGCGTTTTGTAAAGTAGAAATTATGAAATGGGTTG 136340
Query 46944 AGGGTGATGATCCTGCCGAAGACCATAAACGTTGGGCTCCTCAGTGTCCGTTC 46996
||| || ||||| ||| | ||||| | || ||||| |||||||| || |||
Sbjct 136341 CGGGCGACGATCCCGCCAAGGACCACCAGCGCTGGGCGCCTCAGTGCCCTTTC 136393
>seq1305
Length=286731
Score = 100 bits (110), Expect = 2e-16
Identities = 163/235 (69%), Gaps = 0/235 (0%)
Strand=Plus/Plus
Query 34472 AATCGTCGCCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTAT 34531
||| || || || | ||| || | ||| | ||| | ||| |||||||||||||| |
Sbjct 24750 AATAGTTACCTCCGCGAAGTCGAAGCACAAGATGCAATGTGGATTCCTTTTGAATGTTGT 24809
Query 34532 AATCTGAAAGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGT 34591
| || || | ||| || | ||||| ||||||||||| ||||| || ||||| || ||||
Sbjct 24810 AGTCAGACAATGTACGTCCATCTTCTAGTTGTTTACCAGCAAAGATCAAACGTTGCTGGT 24869
Query 34592 CCGGCGGCACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGATAAAATTGTGTCTTCGC 34651
| || || | || ||||| ||| ||| || ||||| | || || || |
Sbjct 24870 CTGGTGGAATACCTTCCTTATCTTGGATTTTAGCTTTTACATTTTCTATAGTATCGGAGG 24929
Query 34652 TCTCCACTTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706
|||||| || | ||| || |||||||| || | || || || ||||| |||||
Sbjct 24930 CCTCCACCTCGAGGGTAATGGTTTTACCCGTAAGGGTCTTGACGAAAATTTGCAT 24984
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 314713071679997
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