Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Heliconius_20melpomene_20melpomene_20[genbank_20GCA_5F000313835.2_20
2012-03-01] 4,309 sequences; 273,786,188 total letters
Query= NC_029692.1
Length=362276
Score E
Sequences producing significant alignments: (Bits) Value
seq2787 154 3e-32
seq3424 152 1e-31
>seq2787
Length=76071
Score = 154 bits (170), Expect = 3e-32
Identities = 156/203 (77%), Gaps = 0/203 (0%)
Strand=Plus/Minus
Query 210912 TGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCTTCCAGCTGC 210971
||||| || ||||||||||||||||| || || | ||||| | |||||||| ||||||
Sbjct 40621 TGAAGGGTAGACTCTTTTTGGATGTTGTAGTCAGACAGGGTGCGACCATCTTCTAGCTGC 40562
Query 210972 TTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGATCTTT 211031
||||| || |||||||| |||||||| || || |||| || || || || || |||||
Sbjct 40561 TTGCCAGCAAAGATAAGACGTTGTTGATCTGGGGGAATACCCTCTTTATCTTGAATCTTA 40502
Query 211032 TGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTCTTTCCCGTG 211091
|| || ||||| ||||||||||| || ||||| ||||| || ||||| || ||
Sbjct 40501 GCCTTTACATTTTCAATGGTGTCAGATGGCTCCACCTCCAGAGTTATAGTCTTGCCTGTT 40442
Query 211092 AGAGTCTTTACAAACACCTGCAT 211114
|| ||||| ||||| | |||||
Sbjct 40441 AGTGTCTTGACAAATATTTGCAT 40419
Score = 154 bits (170), Expect = 3e-32
Identities = 162/213 (76%), Gaps = 0/213 (0%)
Strand=Plus/Minus
Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962
|| || | |||||| || |||||||| ||||| || || || | ||||| | ||||||
Sbjct 41086 AGTACCAAGTGAAGGGTCGACTCTTTCTGGATATTGTAGTCAGACAGGGTGCGGCCATCT 41027
Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022
||||| || || || ||||||||||| |||||||| || ||||||| ||||||||| ||
Sbjct 41026 TCCAGTTGTTTACCAGCGAAGATAAGACGTTGTTGATCTGGAGGAATTCCTTCCTTATCT 40967
Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082
|| ||||| ||| || ||||| |||||||| || ||||| || | ||| || ||
Sbjct 40966 TGAATCTTAGCTTTAACATTTTCAATGGTGTCTGATGGCTCAACTTCCAAAGTTATTGTT 40907
Query 211083 TTTCCCGTGAGAGTCTTTACAAACACCTGCATT 211115
||||| || || || || ||||| | ||||||
Sbjct 40906 TTTCCAGTAAGTGTTTTGACAAATATTTGCATT 40874
Score = 152 bits (168), Expect = 1e-31
Identities = 156/204 (76%), Gaps = 0/204 (0%)
Strand=Plus/Minus
Query 210911 GTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCTTCCAGCTG 210970
||| | |||||||||||| || || || || || | ||| || | ||||| ||||||||
Sbjct 41306 GTGCAAAGTGGACTCTTTCTGAATATTGTAGTCAGAAAGAGTACGCCCATCCTCCAGCTG 41247
Query 210971 CTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGATCTT 211030
|||||| ||||| || || |||||||| || || |||| || || ||||| ||||||||
Sbjct 41246 CTTGCCAGCGAAAATGAGACGTTGTTGATCTGGGGGAATACCCTCTTTGTCTTGGATCTT 41187
Query 211031 TTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTCTTTCCCGT 211090
||| || ||||| || ||||| ||| |||||| || | ||||| || || || ||
Sbjct 41186 GGCTTTAACATTTTCAATAGTGTCTGAGGGTTCAACTTCTAATGTGATAGTTTTCCCTGT 41127
Query 211091 GAGAGTCTTTACAAACACCTGCAT 211114
|| ||||||||||| | ||||||
Sbjct 41126 CAGTGTCTTTACAAAGATCTGCAT 41103
Score = 149 bits (164), Expect = 1e-30
Identities = 160/212 (75%), Gaps = 0/212 (0%)
Strand=Plus/Minus
Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962
|| || | ||| | ||| || |||||||||||||| || || | || || | ||||||
Sbjct 40174 AGTACTAAGTGCAAAGTAGATTCTTTTTGGATGTTGTAGTCAGACAGTGTACGACCATCT 40115
Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022
|| | |||||||| || || ||||| |||||||| || ||||||| ||||| |||||
Sbjct 40114 TCTAATTGCTTGCCCGCAAAAATAAGACGTTGTTGATCCGGAGGAATGCCTTCTTTGTCT 40055
Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082
||||| || |||||| ||||| || |||||||| |||||| || | ||| || ||
Sbjct 40054 TGGATTTTAGCTTTCACATTTTCAATTGTGTCAGAAGCTTCAACTTCTAAAGTAATTGTT 39995
Query 211083 TTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114
||||| ||||| || || ||||| | |||||
Sbjct 39994 TTTCCAGTGAGTGTTTTAACAAAGATTTGCAT 39963
Score = 145 bits (160), Expect = 2e-29
Identities = 167/225 (74%), Gaps = 0/225 (0%)
Strand=Plus/Minus
Query 210893 ACGAAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGT 210952
|||||| | | || | ||||||||| || |||||||| || ||||| || | ||| ||
Sbjct 39728 ACGAAGACGCAATACCAAGTGAAGAGTAGATTCTTTTTGAATATTATAGTCAGAAAGAGT 39669
Query 210953 CCTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCC 211012
| ||| ||||||| ||||| || ||||| || | |||||||| || ||||||| ||
Sbjct 39668 GCGTCCGTCTTCCAATTGCTTTCCAGCGAAAATCAAACGTTGTTGATCTGGAGGAATGCC 39609
Query 211013 TTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAG 211072
||||||||| || || || ||| || ||||| || || || || |||||| || |
Sbjct 39608 TTCCTTGTCTTGAATTTTGGCTTTTACATTTTCAATAGTATCGGAAGGTTCAACTTCCAA 39549
Query 211073 AGTGATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCATTTT 211117
||| || || || ||||| || || || ||||| | |||||||||
Sbjct 39548 AGTAATGGTTTTACCCGTAAGTGTTTTCACAAAGATCTGCATTTT 39504
Score = 143 bits (158), Expect = 6e-29
Identities = 165/222 (74%), Gaps = 0/222 (0%)
Strand=Plus/Minus
Query 210893 ACGAAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGT 210952
|||||| | || || | || | ||| || ||||||||||||||||| |||| || ||
Sbjct 41552 ACGAAGACGAAGTACTAAATGCAAAGTAGATTCTTTTTGGATGTTATAGTCCGACAGAGT 41493
Query 210953 CCTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCC 211012
| ||||| || | ||| || || || ||||| || || |||||||| || |||| ||
Sbjct 41492 GCGGCCATCCTCTAACTGTTTACCAGCAAAGATGAGACGCTGTTGGTCTGGGGGAATGCC 41433
Query 211013 TTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAG 211072
||||| || |||||||| || || |||||||| ||||| || || ||||| |
Sbjct 41432 CTCCTTATCTTGGATCTTAGCCTTAACATTTTCGATAGTGTCGGATGGCTCCACCTCCAA 41373
Query 211073 AGTGATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114
|||||| ||||| || || |||||||| ||||| | ||||||
Sbjct 41372 AGTGATGGTCTTCCCAGTAAGAGTCTTAACAAAGATCTGCAT 41331
Score = 113 bits (124), Expect = 1e-19
Identities = 152/212 (72%), Gaps = 0/212 (0%)
Strand=Plus/Minus
Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962
|| || | ||| || || |||||||| || || || ||||| | | || | ||||||
Sbjct 40858 AGCACTAAGTGCAGGGTTGACTCTTTCTGAATATTGTAATCAGACAAAGTGCGACCATCT 40799
Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022
|||| ||||| || || || || || ||||||||||| || || | || ||||| |||
Sbjct 40798 TCCAATTGCTTTCCAGCAAAAATGAGACGTTGTTGGTCTGGGGGGATGCCCTCCTTATCC 40739
Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082
|| || || ||| || || ||||| |||||||| ||| || || || || || |||
Sbjct 40738 TGTATTTTAGCTTTGACATTCTCGATTGTGTCAGATGGTTCTACTTCCAGGGTAATGGTC 40679
Query 211083 TTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114
||||| || | || || ||||| | |||||
Sbjct 40678 TTTCCAGTCAATGTTTTGACAAATATTTGCAT 40647
>seq3424
Length=494560
Score = 152 bits (168), Expect = 1e-31
Identities = 165/219 (75%), Gaps = 0/219 (0%)
Strand=Plus/Minus
Query 210896 AAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCT 210955
|||||| || ||||||||||| || || ||||| ||||| ||||| || | | || |
Sbjct 290653 AAGTCTGAGAACAAGGTGAAGGGTAGATTCTTTCTGGATATTATAGTCTGATAATGTGCG 290594
Query 210956 TCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTC 211015
||||||||||| ||||| || ||||| || || | |||||| || ||||||| |||||
Sbjct 290593 CCCATCTTCCAGTTGCTTTCCGGCGAAAATCAGTCTTTGTTGATCTGGAGGAATGCCTTC 290534
Query 211016 CTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGT 211075
||| || || |||||| || || ||||| || || ||||| ||| || || | |||
Sbjct 290533 CTTATCTTGAATCTTTGCCTTAACATTTTCTATTGTATCAGAAGCTTCCACTTCCAAAGT 290474
Query 211076 GATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114
||| || || || || || ||||||||||| | |||||
Sbjct 290473 GATAGTTTTCCCAGTCAGTGTCTTTACAAAAATTTGCAT 290435
Score = 143 bits (158), Expect = 6e-29
Identities = 151/199 (76%), Gaps = 0/199 (0%)
Strand=Plus/Minus
Query 210917 AGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCTTCCAGCTGCTTGCC 210976
||| ||||| || ||||| ||||| |||| | || | |||||||||||| ||||| ||
Sbjct 290404 AGTAGACTCCTTCTGGATATTATAGTCCGACAATGTGCGTCCATCTTCCAGTTGCTTTCC 290345
Query 210977 TGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGATCTTTTGTTT 211036
||||| || || | |||||| || ||||||| |||||||| || || |||||| ||
Sbjct 290344 GGCGAAAATCAGTCTTTGTTGATCTGGAGGAATGCCTTCCTTATCTTGAATCTTTGCCTT 290285
Query 211037 CACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTCTTTCCCGTGAGAGT 211096
|| ||||| || || ||||| ||| ||||| | |||||| || || || || || ||
Sbjct 290284 AACATTTTCTATTGTATCAGAAGCTTCCACCTCCAAAGTGATAGTTTTCCCAGTCAGTGT 290225
Query 211097 CTTTACAAACACCTGCATT 211115
||||||||| | ||||||
Sbjct 290224 CTTTACAAAAATTTGCATT 290206
Score = 136 bits (150), Expect = 9e-27
Identities = 158/213 (74%), Gaps = 0/213 (0%)
Strand=Plus/Minus
Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962
|| || | ||| | ||| || || ||||| || |||||||| | || || | |||||||
Sbjct 289278 AGCACCAAGTGCAAAGTAGATTCCTTTTGAATATTATAATCTGACAGTGTACGTCCATCT 289219
Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022
|||||||| || ||||| || ||||| | |||||||||||||||| ||||| |||||
Sbjct 289218 TCCAGCTGTTTTCCTGCAAAAATAAGCCTCTGTTGGTCAGGAGGAATGCCTTCTTTGTCT 289159
Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082
|| || ||| || || ||||| || || ||||| || || || | ||||| ||
Sbjct 289158 TGAATTTTTGCCTTAACATTTTCTATTGTATCAGAAGCCTCCACTTCCAATGTGATAGTT 289099
Query 211083 TTTCCCGTGAGAGTCTTTACAAACACCTGCATT 211115
|| || || || ||||||||||| | ||||||
Sbjct 289098 TTGCCAGTCAGTGTCTTTACAAATATTTGCATT 289066
Score = 120 bits (132), Expect = 7e-22
Identities = 149/204 (73%), Gaps = 0/204 (0%)
Strand=Plus/Minus
Query 210911 GTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCTTCCAGCTG 210970
||| | ||| || || || ||||| ||||| || | || || | |||||||||| ||
Sbjct 288814 GTGCAAAGTAGATTCCTTCTGGATATTATAGTCTGAGAGTGTGCGCCCATCTTCCAATTG 288755
Query 210971 CTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGATCTT 211030
||| || ||||| || || | |||||| || ||||| | ||||||||||| || |||||
Sbjct 288754 CTTTCCGGCGAAAATTAGTCTTTGTTGATCTGGAGGGATGCCTTCCTTGTCTTGAATCTT 288695
Query 211031 TTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTCTTTCCCGT 211090
| || ||||||||||| || ||||| ||| || || | ||||| || || || ||
Sbjct 288694 TGCCTTTACGTTTTCGATTGTATCAGAAGCTTCCACTTCCAATGTGATGGTTTTCCCAGT 288635
Query 211091 GAGAGTCTTTACAAACACCTGCAT 211114
| ||| ||||| || | |||||
Sbjct 288634 TAAAGTTTTTACGAAGATTTGCAT 288611
Score = 118 bits (130), Expect = 2e-21
Identities = 145/198 (73%), Gaps = 0/198 (0%)
Strand=Plus/Minus
Query 210917 AGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCTTCCAGCTGCTTGCC 210976
||| ||||| || ||||| ||||| |||| | || | |||||||||||| ||||| ||
Sbjct 290176 AGTAGACTCCTTCTGGATATTATAGTCCGACAATGTGCGTCCATCTTCCAGTTGCTTTCC 290117
Query 210977 TGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGATCTTTTGTTT 211036
||||| || || | |||||| || ||||||| ||||||||||| || |||||| ||
Sbjct 290116 GGCGAAAATCAGTCTTTGTTGATCTGGAGGAATGCCTTCCTTGTCTTGAATCTTTGCCTT 290057
Query 211037 CACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTCTTTCCCGTGAGAGT 211096
|| ||||| || |||||||| || || || | || || || || || || | ||
Sbjct 290056 AACATTTTCTATTGTGTCAGAAGCCTCCACTTCCAAGGTAATAGTTTTGCCAGTCAATGT 289997
Query 211097 CTTTACAAACACCTGCAT 211114
|| ||||| | |||||
Sbjct 289996 TTTCACAAAAATTTGCAT 289979
Score = 114 bits (126), Expect = 3e-20
Identities = 153/213 (72%), Gaps = 0/213 (0%)
Strand=Plus/Minus
Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962
|| || ||||| | ||| || || || || || || || || | || || | |||||||
Sbjct 289506 AGTACCAGGTGCAAAGTTGATTCCTTCTGAATATTGTAGTCAGATAGTGTGCGTCCATCT 289447
Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022
|| |||||||| || || || ||||| | ||| || || || |||| || || || |||
Sbjct 289446 TCAAGCTGCTTTCCAGCAAAAATAAGTCTTTGCTGATCTGGGGGAATACCCTCTTTATCC 289387
Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082
|| || || || || ||||| || || ||||| ||| || || | |||||| |||
Sbjct 289386 TGAATTTTCGCCTTAACATTTTCAATTGTATCAGAAGCTTCCACTTCCAAAGTGATAGTC 289327
Query 211083 TTTCCCGTGAGAGTCTTTACAAACACCTGCATT 211115
|| || || || ||||||||||| | ||||||
Sbjct 289326 TTGCCAGTCAGTGTCTTTACAAAAATTTGCATT 289294
Score = 105 bits (116), Expect = 2e-17
Identities = 151/213 (71%), Gaps = 0/213 (0%)
Strand=Plus/Minus
Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962
|| || || || | ||| || || || || || || || || | || || | |||||||
Sbjct 289734 AGTACCAGATGCAAAGTAGATTCCTTCTGAATATTGTAGTCAGATAGTGTGCGTCCATCT 289675
Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022
|| |||||||| || || || ||||| | ||| || || || |||| || || || |||
Sbjct 289674 TCAAGCTGCTTTCCAGCAAAAATAAGTCTTTGCTGATCTGGGGGAATGCCCTCTTTATCC 289615
Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082
|| || || || || ||||| || || ||||| ||| || || | ||||| |||
Sbjct 289614 TGAATTTTCGCCTTAACATTTTCAATTGTATCAGAAGCTTCCACTTCCAATGTGATAGTC 289555
Query 211083 TTTCCCGTGAGAGTCTTTACAAACACCTGCATT 211115
|| || || || ||||||||||| | ||||||
Sbjct 289554 TTGCCAGTCAGTGTCTTTACAAATATTTGCATT 289522
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1159088004304785
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