Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Heliconius_20melpomene_20melpomene_20[genbank_20GCA_5F000313835.2_20 2012-03-01] 4,309 sequences; 273,786,188 total letters Query= NC_029996.1 Length=134272 Score E Sequences producing significant alignments: (Bits) Value seq3424 104 2e-17 seq2787 86.0 5e-12 >seq3424 Length=494560 Score = 104 bits (114), Expect = 2e-17 Identities = 172/245 (70%), Gaps = 4/245 (2%) Strand=Plus/Minus Query 39041 ACTAAAATTTATTCAAGCCTCCTCTTAAGCGTAACACCAAATGTAGCGTGCTCTCTTTTT 39100 || ||||||| || || || || | ||| | |||||| || | || || |||| Sbjct 289308 ACAAAAATTTG--CATTCCACCCCTAAGGCGCAGCACCAAGTGCAAAGTAGATTCCTTTT 289251 Query 39101 GTATATTATAATCGGCAAGTGTTCGTTCGTCATCAAGCTGTTTGCCCGCAAATATAAGAC 39160 | ||||||||||| | ||||| ||| | || || |||||||| || ||||| ||||| | Sbjct 289250 GAATATTATAATCTGACAGTGTACGTCCATCTTCCAGCTGTTTTCCTGCAAAAATAAGCC 289191 Query 39161 GCTGCTGGTCGGTGGGCACGCTCTCTTTGTCCATGATTTTCTG-TTTGAGCGTCGCCACC 39219 ||| ||||| | || | || ||||||| | ||| ||| || || | | | | Sbjct 289190 TCTGTTGGTCAGGAGGAATGCCTTCTTTGT-CTTGAATTTTTGCCTTAACATTTTCTATT 289132 Query 39220 GTATCGCTCGACTCCACGTCCACCGTGATACTTTTTCCCGTCAGCGTTTTAACAAAGATT 39279 ||||| | |||||| |||| |||||| |||| || ||||| || || ||||| ||| Sbjct 289131 GTATCAGAAGCCTCCACTTCCAATGTGATAGTTTTGCCAGTCAGTGTCTTTACAAATATT 289072 Query 39280 TGCAT 39284 ||||| Sbjct 289071 TGCAT 289067 >seq2787 Length=76071 Score = 86.0 bits (94), Expect = 5e-12 Identities = 148/215 (69%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 39070 CGTAACACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCG 39129 || || || |||||||| || || ||||| ||||||||||| | | ||| || | Sbjct 39949 CGCAATACTAAATGTAGGGTAGATTCCTTTTGAATATTATAATCAGATAATGTACGGCCA 39890 Query 39130 TCATCAAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTTG 39189 || || || ||||| || ||||| ||||| | ||| || || | ||| | | ||||||| Sbjct 39889 TCTTCTAGTTGTTTTCCAGCAAAAATAAGCCTCTGTTGATCTGGGGGAATACCCTCTTTG 39830 Query 39190 TCCATGATTTTCTGTTTGAGCGTCGCCACCGTATCGCTCGACTCCACGTCCACCGTGATA 39249 || ||| || || | | | | || ||| || ||| || || | ||||| Sbjct 39829 TCTTGGATCTTTGCCTTCACATTTTCGATAGTGTCGGACGGCTCTACCTCTAAAGTGATG 39770 Query 39250 CTTTTTCCCGTCAGCGTTTTAACAAAGATTTGCAT 39284 ||||||| || || || ||||||||||| ||||| Sbjct 39769 GTTTTTCCTGTAAGAGTCTTAACAAAGATCTGCAT 39735 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 429523042010117