Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Heliconius_20melpomene_20melpomene_20[genbank_20GCA_5F000313835.2_20 2012-03-01] 4,309 sequences; 273,786,188 total letters Query= NC_029997.1 Length=105667 Score E Sequences producing significant alignments: (Bits) Value seq2787 134 9e-27 seq3424 111 1e-19 >seq2787 Length=76071 Score = 134 bits (148), Expect = 9e-27 Identities = 168/228 (74%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||| || || || || || || || ||||| ||||| | |||||||| || | Sbjct 41103 ATGCAGATCTTTGTAAAGACACTGACAGGGAAAACTATCACATTAGAAGTTGAACCCTCA 41162 Query 23671 GACACTGTTGAAA-TATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 |||||| |||||| | ||||| | || | | |||||||| ||| | || |||||||| Sbjct 41163 GACACTATTGAAAATGTTAAAGCCAAGA-TCCAAGACAAAGAGGGTATTCCCCCAGATCA 41221 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 ||| ||| | || || || ||||| || ||||| || | || ||| | || ||||| Sbjct 41222 ACAACGTCTCATTTTCGCTGGCAAGCAGCTGGAGGATGGGCGTACTCTTTCTGACTACAA 41281 Query 23790 CATACAAAAAGAGTCCACATTACATTTAGTTTTAAGGTTGCGAGGAGG 23837 || || ||||||||||| || || ||||| ||| | || |||||||| Sbjct 41282 TATTCAGAAAGAGTCCACTTTGCACTTAGTATTACGTTTACGAGGAGG 41329 Score = 131 bits (144), Expect = 1e-25 Identities = 149/200 (75%), Gaps = 0/200 (0%) Strand=Plus/Plus Query 23608 AAAATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCC 23667 ||||||||||| || || ||||| || ||||| ||||| || ||| | |||||||| | Sbjct 39504 AAAATGCAGATCTTTGTGAAAACACTTACGGGTAAAACCATTACTTTGGAAGTTGAACCT 39563 Query 23668 ACGGACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGAT 23727 | || ||| |||||| ||||| |||||| ||||| ||||| | || |||||| Sbjct 39564 TCCGATACTATTGAAAATGTAAAAGCCAAAATTCAAGACAAGGAAGGCATTCCTCCAGAT 39623 Query 23728 CAACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTAC 23787 ||||| ||||| || || || || || ||| ||||||||| ||||||| | || || Sbjct 39624 CAACAACGTTTGATTTTCGCTGGAAAGCAATTGGAAGACGGACGCACTCTTTCTGACTAT 39683 Query 23788 AACATACAAAAAGAGTCCAC 23807 || || |||||||| || || Sbjct 39684 AATATTCAAAAAGAATCTAC 39703 Score = 122 bits (134), Expect = 6e-23 Identities = 163/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 ||||||||||| ||||||||||| || ||||| || || || || ||||| || || | Sbjct 40191 ATGCAGATTTTTGTTAAAACCCTAACTGGAAAGACCATTACCCTGGAAGTGGAACCCTCT 40250 Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730 || ||| |||||| ||||| ||||| |||||||| || | || || ||||| Sbjct 40251 GATACTATTGAAAATGTAAAAGCTAAAATCCAAGACAAAGAGGGCATCCCACCTGATCAG 40310 Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAAC 23790 |||||| | || ||||| || || ||| ||||||| | ||||| | || |||||| Sbjct 40311 CAGCGTCTTATCTTTGCTGGTAAGCAATTGGAAGATGGTCGCACCCTGTCTGACTACAAC 40370 Query 23791 ATACAAAAAGAGTCCACATTACATTTAGTTTTAAGGTTGCGAGGAGG 23837 || || || ||||| || | ||| |||| | | ||||||| || Sbjct 40371 ATCCAGAAGGAGTCTACCCTTCATCTAGTACTGCGTCTGCGAGGTGG 40417 Score = 120 bits (132), Expect = 2e-22 Identities = 152/209 (73%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 ||||| || || |||||||| ||||| |||||||| || ||| | |||||||| | | Sbjct 39963 ATGCAAATCTTTGTTAAAACACTCACTGGAAAAACAATTACTTTAGAAGTTGAAGCTTCT 40022 Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730 ||||| |||||| | ||| ||||| ||||||||||| | || || |||||| Sbjct 40023 GACACAATTGAAAATGTGAAAGCTAAAATCCAAGACAAAGAAGGCATTCCTCCGGATCAA 40082 Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAAC 23790 || ||| | || ||||| ||||| ||| | ||||| | || || | || |||||| Sbjct 40083 CAACGTCTTATTTTTGCGGGCAAGCAATTAGAAGATGGTCGTACACTGTCTGACTACAAC 40142 Query 23791 ATACAAAAAGAGTCCACATTACATTTAGT 23819 || |||||||| || || || || ||||| Sbjct 40143 ATCCAAAAAGAATCTACTTTGCACTTAGT 40171 Score = 118 bits (130), Expect = 7e-22 Identities = 154/213 (72%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 23610 AATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCAC 23669 ||||||||| || ||||| || || || |||||||| |||||| | || || || | | Sbjct 39734 AATGCAGATCTTTGTTAAGACTCTTACAGGAAAAACCATCACTTTAGAGGTAGAGCCGTC 39793 Query 23670 GGACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 |||||| | |||| | || ||| || |||||||| ||| | || |||||||| Sbjct 39794 CGACACTATCGAAAATGTGAAGGCAAAGATCCAAGACAAAGAGGGTATTCCCCCAGATCA 39853 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 |||| | | || ||||| || |||||||| ||||| | || || ||| ||||| || Sbjct 39854 ACAGAGGCTTATTTTTGCTGGAAAACAACTAGAAGATGGCCGTACATTATCTGATTATAA 39913 Query 23790 CATACAAAAAGAGTCCACATTACATTTAGTTTT 23822 || ||||| || || || |||||||||| || Sbjct 39914 TATTCAAAAGGAATCTACCCTACATTTAGTATT 39946 Score = 109 bits (120), Expect = 4e-19 Identities = 145/199 (73%), Gaps = 2/199 (1%) Strand=Plus/Plus Query 23610 AATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCAC 23669 |||||| || || || ||||| || || |||||||| || ||| | |||||||| | | Sbjct 40874 AATGCAAATATTTGTCAAAACACTTACTGGAAAAACAATAACTTTGGAAGTTGAGCCATC 40933 Query 23670 GGACACTGTTGAAA-TATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATC 23728 ||||| |||||| | ||||| | || | || || || ||||| | || ||||||| Sbjct 40934 AGACACCATTGAAAATGTTAAAGCTAAGA-TTCAAGATAAGGAAGGAATTCCTCCAGATC 40992 Query 23729 AACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACA 23788 |||| ||| | || || || || |||||||||||||| | ||||| | || |||| Sbjct 40993 AACAACGTCTTATCTTCGCTGGTAAACAACTGGAAGATGGCCGCACCCTGTCTGACTACA 41052 Query 23789 ACATACAAAAAGAGTCCAC 23807 | || || |||||||| || Sbjct 41053 ATATCCAGAAAGAGTCGAC 41071 Score = 104 bits (114), Expect = 2e-17 Identities = 159/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 ||||| || || || || || || || || || || || ||||| || || || | | Sbjct 40419 ATGCAAATATTTGTCAAGACACTAACAGGCAAGACTATAACTCTGGAGGTGGAGCCATCT 40478 Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730 ||||| |||||| |||| || ||| || ||||| ||| | || ||||||||| Sbjct 40479 GACACCATTGAAAATGTAAAGGCTAAGATTCAAGATAAAGAGGGTATTCCCCCAGATCAA 40538 Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAAC 23790 || ||| | || ||||| ||||| || || ||||| | ||||| | || |||||| Sbjct 40539 CAACGTCTTATCTTTGCTGGCAAGCAGCTAGAAGATGGTCGCACCCTGTCTGACTACAAC 40598 Query 23791 ATACAAAAAGAGTCCACATTACATTTAGTTTTAAGGTTGCGAGGAGG 23837 || ||||||||||| || | |||||||| | | ||||||| || Sbjct 40599 ATCCAAAAAGAGTCTACCCTTCATTTAGTACTGCGTCTGCGAGGTGG 40645 >seq3424 Length=494560 Score = 111 bits (122), Expect = 1e-19 Identities = 164/230 (71%), Gaps = 2/230 (1%) Strand=Plus/Plus Query 23610 AATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCAC 23669 |||||| |||||||| || || || || || || || |||||| | |||||||| | | Sbjct 288838 AATGCAAATTTTCGTAAAGACACTGACTGGCAAGACTATCACTTTGGAAGTTGAGCCTTC 288897 Query 23670 GGACACTGTTGAAA-TATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATC 23728 || || |||||| | ||||| | |||| || || ||||| || | || ||||||| Sbjct 288898 TGATACAATTGAAAATGTTAAAGCGAAAA-TTCAGGATAAAGAGGGAATTCCCCCAGATC 288956 Query 23729 AACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACA 23788 | || | | || ||||| || || || || ||||| | |||||| || ||||||| Sbjct 288957 AGCAAAGACTTATTTTTGCTGGAAAGCAGCTTGAAGATGGACGCACACTATCTGATTACA 289016 Query 23789 ACATACAAAAAGAGTCCACATTACATTTAGTTTTAAGGTTGCGAGGAGGA 23838 |||| || ||||| || || || || |||| || || || |||| ||| Sbjct 289017 ACATTCAGAAAGAATCTACTTTGCACCTAGTACTACGGCTGAGAGGTGGA 289066 Score = 102 bits (112), Expect = 6e-17 Identities = 152/213 (71%), Gaps = 2/213 (1%) Strand=Plus/Plus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 ||||| ||||| || ||||| | || || ||||| || || | ||||| || | | Sbjct 289979 ATGCAAATTTTTGTGAAAACATTGACTGGCAAAACTATTACCTTGGAAGTGGAGGCTTCT 290038 Query 23671 GACACTGTTGAAA-TATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 ||||| | |||| | |||| |||| | || ||||| ||||| | || |||||||| Sbjct 290039 GACACAATAGAAAATGTTAAGGCAAAGA-TTCAAGACAAGGAAGGCATTCCTCCAGATCA 290097 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 ||| | | || || ||||| || ||||||||||| | |||||| || || || || Sbjct 290098 ACAAAGACTGATTTTCGCCGGAAAGCAACTGGAAGATGGACGCACATTGTCGGACTATAA 290157 Query 23790 CATACAAAAAGAGTCCACATTACATTTAGTTTT 23822 || || || ||||| || || ||||||||||| Sbjct 290158 TATCCAGAAGGAGTCTACTTTGCATTTAGTTTT 290190 Score = 100 bits (110), Expect = 2e-16 Identities = 152/214 (71%), Gaps = 2/214 (1%) Strand=Plus/Plus Query 23610 AATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCAC 23669 |||||| ||||| || || || || || || ||||| |||||| | || || || | | Sbjct 290206 AATGCAAATTTTTGTAAAGACACTGACTGGGAAAACTATCACTTTGGAGGTGGAAGCTTC 290265 Query 23670 GGACACTGTTGAAA-TATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATC 23728 || || | |||| | |||| |||| | || || || ||||| | || ||||||| Sbjct 290266 TGATACAATAGAAAATGTTAAGGCAAAGA-TTCAAGATAAGGAAGGCATTCCTCCAGATC 290324 Query 23729 AACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACA 23788 |||| | | || || ||||| || ||||||||||| | |||||| || || || | Sbjct 290325 AACAAAGACTGATTTTCGCCGGAAAGCAACTGGAAGATGGACGCACATTGTCGGACTATA 290384 Query 23789 ACATACAAAAAGAGTCCACATTACATTTAGTTTT 23822 | || || || ||||| || || ||||||||||| Sbjct 290385 ATATCCAGAAGGAGTCTACTTTGCATTTAGTTTT 290418 Score = 95.1 bits (104), Expect = 8e-15 Identities = 149/211 (71%), Gaps = 2/211 (1%) Strand=Plus/Plus Query 23610 AATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCAC 23669 |||||| || || || || || || || || || || ||||| || |||||||| || | Sbjct 289750 AATGCAAATATTTGTGAAGACACTGACTGGCAAGACTATCACACTGGAAGTTGAGCCCTC 289809 Query 23670 GGACACTGTTGAAA-TATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATC 23728 ||||| | |||| | |||| | |||| || || || ||||| | || ||||| | Sbjct 289810 TGACACAATCGAAAATGTTAAGGCCAAAA-TTCAAGATAAGGAAGGCATTCCTCCAGACC 289868 Query 23729 AACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACA 23788 |||| | | || ||||| || || ||||| || || | ||| || || || |||| Sbjct 289869 AACAAAGGCTTATTTTTGCTGGAAAGCAACTTGAGGATGGACGTACACTATCAGACTACA 289928 Query 23789 ACATACAAAAAGAGTCCACATTACATTTAGT 23819 | || || ||||| || || ||||||||||| Sbjct 289929 ATATTCAGAAAGAATCTACTTTACATTTAGT 289959 Score = 87.8 bits (96), Expect = 1e-12 Identities = 147/213 (69%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 ||||| || ||||| ||||| | || || ||||| ||||| | ||||| || | | Sbjct 288611 ATGCAAATCTTCGTAAAAACTTTAACTGGGAAAACCATCACATTGGAAGTGGAAGCTTCT 288670 Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730 || || | |||| |||| ||| ||| ||||| ||||| | || ||||||||| Sbjct 288671 GATACAATCGAAAACGTAAAGGCAAAGATTCAAGACAAGGAAGGCATCCCTCCAGATCAA 288730 Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAAC 23790 || | |||| || ||||| || ||| ||||||| | ||||| | || || || Sbjct 288731 CAAAGACTAATTTTCGCCGGAAAGCAATTGGAAGATGGGCGCACACTCTCAGACTATAAT 288790 Query 23791 ATACAAAAAGAGTCCACATTACATTTAGTTTTA 23823 || || || || || || || || ||||||||| Sbjct 288791 ATCCAGAAGGAATCTACTTTGCACTTAGTTTTA 288823 Score = 86.0 bits (94), Expect = 4e-12 Identities = 147/211 (70%), Gaps = 2/211 (1%) Strand=Plus/Plus Query 23610 AATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCAC 23669 |||||| || || || || || || || || ||||| ||||| | ||||| || | | Sbjct 289066 AATGCAAATATTTGTAAAGACACTGACTGGCAAAACTATCACATTGGAAGTGGAGGCTTC 289125 Query 23670 GGACACTGTTGAAA-TATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATC 23728 || || | |||| | |||| |||||| || ||||||||||| | || || || | Sbjct 289126 TGATACAATAGAAAATGTTAAGGCAAAAA-TTCAAGACAAAGAAGGCATTCCTCCTGACC 289184 Query 23729 AACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACA 23788 ||||| | | || ||||| || ||||| |||||||| | ||| || | ||||| | Sbjct 289185 AACAGAGGCTTATTTTTGCAGGAAAACAGCTGGAAGATGGACGTACACTGTCAGATTATA 289244 Query 23789 ACATACAAAAAGAGTCCACATTACATTTAGT 23819 | || ||||| || || || || || || || Sbjct 289245 ATATTCAAAAGGAATCTACTTTGCACTTGGT 289275 Score = 84.2 bits (92), Expect = 1e-11 Identities = 139/198 (70%), Gaps = 2/198 (1%) Strand=Plus/Plus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 ||||| ||||| || || || || || || ||||| |||||| | ||||| || | | Sbjct 290435 ATGCAAATTTTTGTAAAGACACTGACTGGGAAAACTATCACTTTGGAAGTGGAAGCTTCT 290494 Query 23671 GACACTGTTGAAA-TATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 || || | |||| | |||| |||| | || || || ||||| | || |||||||| Sbjct 290495 GATACAATAGAAAATGTTAAGGCAAAGA-TTCAAGATAAGGAAGGCATTCCTCCAGATCA 290553 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 ||| | | || || ||||| || ||||||||||| | ||||| ||| || || || Sbjct 290554 ACAAAGACTGATTTTCGCCGGAAAGCAACTGGAAGATGGGCGCACATTATCAGACTATAA 290613 Query 23790 CATACAAAAAGAGTCCAC 23807 || || ||||| || || Sbjct 290614 TATCCAGAAAGAATCTAC 290631 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 337991849108972