Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Heliconius_20melpomene_20melpomene_20[genbank_20GCA_5F000313835.2_20
2012-03-01] 4,309 sequences; 273,786,188 total letters
Query= NC_029997.1
Length=105667
Score E
Sequences producing significant alignments: (Bits) Value
seq2787 134 9e-27
seq3424 111 1e-19
>seq2787
Length=76071
Score = 134 bits (148), Expect = 9e-27
Identities = 168/228 (74%), Gaps = 2/228 (1%)
Strand=Plus/Plus
Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670
|||||||| || || || || || || || ||||| ||||| | |||||||| || |
Sbjct 41103 ATGCAGATCTTTGTAAAGACACTGACAGGGAAAACTATCACATTAGAAGTTGAACCCTCA 41162
Query 23671 GACACTGTTGAAA-TATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729
|||||| |||||| | ||||| | || | | |||||||| ||| | || ||||||||
Sbjct 41163 GACACTATTGAAAATGTTAAAGCCAAGA-TCCAAGACAAAGAGGGTATTCCCCCAGATCA 41221
Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789
||| ||| | || || || ||||| || ||||| || | || ||| | || |||||
Sbjct 41222 ACAACGTCTCATTTTCGCTGGCAAGCAGCTGGAGGATGGGCGTACTCTTTCTGACTACAA 41281
Query 23790 CATACAAAAAGAGTCCACATTACATTTAGTTTTAAGGTTGCGAGGAGG 23837
|| || ||||||||||| || || ||||| ||| | || ||||||||
Sbjct 41282 TATTCAGAAAGAGTCCACTTTGCACTTAGTATTACGTTTACGAGGAGG 41329
Score = 131 bits (144), Expect = 1e-25
Identities = 149/200 (75%), Gaps = 0/200 (0%)
Strand=Plus/Plus
Query 23608 AAAATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCC 23667
||||||||||| || || ||||| || ||||| ||||| || ||| | |||||||| |
Sbjct 39504 AAAATGCAGATCTTTGTGAAAACACTTACGGGTAAAACCATTACTTTGGAAGTTGAACCT 39563
Query 23668 ACGGACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGAT 23727
| || ||| |||||| ||||| |||||| ||||| ||||| | || ||||||
Sbjct 39564 TCCGATACTATTGAAAATGTAAAAGCCAAAATTCAAGACAAGGAAGGCATTCCTCCAGAT 39623
Query 23728 CAACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTAC 23787
||||| ||||| || || || || || ||| ||||||||| ||||||| | || ||
Sbjct 39624 CAACAACGTTTGATTTTCGCTGGAAAGCAATTGGAAGACGGACGCACTCTTTCTGACTAT 39683
Query 23788 AACATACAAAAAGAGTCCAC 23807
|| || |||||||| || ||
Sbjct 39684 AATATTCAAAAAGAATCTAC 39703
Score = 122 bits (134), Expect = 6e-23
Identities = 163/227 (72%), Gaps = 0/227 (0%)
Strand=Plus/Plus
Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670
||||||||||| ||||||||||| || ||||| || || || || ||||| || || |
Sbjct 40191 ATGCAGATTTTTGTTAAAACCCTAACTGGAAAGACCATTACCCTGGAAGTGGAACCCTCT 40250
Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730
|| ||| |||||| ||||| ||||| |||||||| || | || || |||||
Sbjct 40251 GATACTATTGAAAATGTAAAAGCTAAAATCCAAGACAAAGAGGGCATCCCACCTGATCAG 40310
Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAAC 23790
|||||| | || ||||| || || ||| ||||||| | ||||| | || ||||||
Sbjct 40311 CAGCGTCTTATCTTTGCTGGTAAGCAATTGGAAGATGGTCGCACCCTGTCTGACTACAAC 40370
Query 23791 ATACAAAAAGAGTCCACATTACATTTAGTTTTAAGGTTGCGAGGAGG 23837
|| || || ||||| || | ||| |||| | | ||||||| ||
Sbjct 40371 ATCCAGAAGGAGTCTACCCTTCATCTAGTACTGCGTCTGCGAGGTGG 40417
Score = 120 bits (132), Expect = 2e-22
Identities = 152/209 (73%), Gaps = 0/209 (0%)
Strand=Plus/Plus
Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670
||||| || || |||||||| ||||| |||||||| || ||| | |||||||| | |
Sbjct 39963 ATGCAAATCTTTGTTAAAACACTCACTGGAAAAACAATTACTTTAGAAGTTGAAGCTTCT 40022
Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730
||||| |||||| | ||| ||||| ||||||||||| | || || ||||||
Sbjct 40023 GACACAATTGAAAATGTGAAAGCTAAAATCCAAGACAAAGAAGGCATTCCTCCGGATCAA 40082
Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAAC 23790
|| ||| | || ||||| ||||| ||| | ||||| | || || | || ||||||
Sbjct 40083 CAACGTCTTATTTTTGCGGGCAAGCAATTAGAAGATGGTCGTACACTGTCTGACTACAAC 40142
Query 23791 ATACAAAAAGAGTCCACATTACATTTAGT 23819
|| |||||||| || || || || |||||
Sbjct 40143 ATCCAAAAAGAATCTACTTTGCACTTAGT 40171
Score = 118 bits (130), Expect = 7e-22
Identities = 154/213 (72%), Gaps = 0/213 (0%)
Strand=Plus/Plus
Query 23610 AATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCAC 23669
||||||||| || ||||| || || || |||||||| |||||| | || || || | |
Sbjct 39734 AATGCAGATCTTTGTTAAGACTCTTACAGGAAAAACCATCACTTTAGAGGTAGAGCCGTC 39793
Query 23670 GGACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729
|||||| | |||| | || ||| || |||||||| ||| | || ||||||||
Sbjct 39794 CGACACTATCGAAAATGTGAAGGCAAAGATCCAAGACAAAGAGGGTATTCCCCCAGATCA 39853
Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789
|||| | | || ||||| || |||||||| ||||| | || || ||| ||||| ||
Sbjct 39854 ACAGAGGCTTATTTTTGCTGGAAAACAACTAGAAGATGGCCGTACATTATCTGATTATAA 39913
Query 23790 CATACAAAAAGAGTCCACATTACATTTAGTTTT 23822
|| ||||| || || || |||||||||| ||
Sbjct 39914 TATTCAAAAGGAATCTACCCTACATTTAGTATT 39946
Score = 109 bits (120), Expect = 4e-19
Identities = 145/199 (73%), Gaps = 2/199 (1%)
Strand=Plus/Plus
Query 23610 AATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCAC 23669
|||||| || || || ||||| || || |||||||| || ||| | |||||||| | |
Sbjct 40874 AATGCAAATATTTGTCAAAACACTTACTGGAAAAACAATAACTTTGGAAGTTGAGCCATC 40933
Query 23670 GGACACTGTTGAAA-TATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATC 23728
||||| |||||| | ||||| | || | || || || ||||| | || |||||||
Sbjct 40934 AGACACCATTGAAAATGTTAAAGCTAAGA-TTCAAGATAAGGAAGGAATTCCTCCAGATC 40992
Query 23729 AACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACA 23788
|||| ||| | || || || || |||||||||||||| | ||||| | || ||||
Sbjct 40993 AACAACGTCTTATCTTCGCTGGTAAACAACTGGAAGATGGCCGCACCCTGTCTGACTACA 41052
Query 23789 ACATACAAAAAGAGTCCAC 23807
| || || |||||||| ||
Sbjct 41053 ATATCCAGAAAGAGTCGAC 41071
Score = 104 bits (114), Expect = 2e-17
Identities = 159/227 (70%), Gaps = 0/227 (0%)
Strand=Plus/Plus
Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670
||||| || || || || || || || || || || || ||||| || || || | |
Sbjct 40419 ATGCAAATATTTGTCAAGACACTAACAGGCAAGACTATAACTCTGGAGGTGGAGCCATCT 40478
Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730
||||| |||||| |||| || ||| || ||||| ||| | || |||||||||
Sbjct 40479 GACACCATTGAAAATGTAAAGGCTAAGATTCAAGATAAAGAGGGTATTCCCCCAGATCAA 40538
Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAAC 23790
|| ||| | || ||||| ||||| || || ||||| | ||||| | || ||||||
Sbjct 40539 CAACGTCTTATCTTTGCTGGCAAGCAGCTAGAAGATGGTCGCACCCTGTCTGACTACAAC 40598
Query 23791 ATACAAAAAGAGTCCACATTACATTTAGTTTTAAGGTTGCGAGGAGG 23837
|| ||||||||||| || | |||||||| | | ||||||| ||
Sbjct 40599 ATCCAAAAAGAGTCTACCCTTCATTTAGTACTGCGTCTGCGAGGTGG 40645
>seq3424
Length=494560
Score = 111 bits (122), Expect = 1e-19
Identities = 164/230 (71%), Gaps = 2/230 (1%)
Strand=Plus/Plus
Query 23610 AATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCAC 23669
|||||| |||||||| || || || || || || || |||||| | |||||||| | |
Sbjct 288838 AATGCAAATTTTCGTAAAGACACTGACTGGCAAGACTATCACTTTGGAAGTTGAGCCTTC 288897
Query 23670 GGACACTGTTGAAA-TATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATC 23728
|| || |||||| | ||||| | |||| || || ||||| || | || |||||||
Sbjct 288898 TGATACAATTGAAAATGTTAAAGCGAAAA-TTCAGGATAAAGAGGGAATTCCCCCAGATC 288956
Query 23729 AACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACA 23788
| || | | || ||||| || || || || ||||| | |||||| || |||||||
Sbjct 288957 AGCAAAGACTTATTTTTGCTGGAAAGCAGCTTGAAGATGGACGCACACTATCTGATTACA 289016
Query 23789 ACATACAAAAAGAGTCCACATTACATTTAGTTTTAAGGTTGCGAGGAGGA 23838
|||| || ||||| || || || || |||| || || || |||| |||
Sbjct 289017 ACATTCAGAAAGAATCTACTTTGCACCTAGTACTACGGCTGAGAGGTGGA 289066
Score = 102 bits (112), Expect = 6e-17
Identities = 152/213 (71%), Gaps = 2/213 (1%)
Strand=Plus/Plus
Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670
||||| ||||| || ||||| | || || ||||| || || | ||||| || | |
Sbjct 289979 ATGCAAATTTTTGTGAAAACATTGACTGGCAAAACTATTACCTTGGAAGTGGAGGCTTCT 290038
Query 23671 GACACTGTTGAAA-TATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729
||||| | |||| | |||| |||| | || ||||| ||||| | || ||||||||
Sbjct 290039 GACACAATAGAAAATGTTAAGGCAAAGA-TTCAAGACAAGGAAGGCATTCCTCCAGATCA 290097
Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789
||| | | || || ||||| || ||||||||||| | |||||| || || || ||
Sbjct 290098 ACAAAGACTGATTTTCGCCGGAAAGCAACTGGAAGATGGACGCACATTGTCGGACTATAA 290157
Query 23790 CATACAAAAAGAGTCCACATTACATTTAGTTTT 23822
|| || || ||||| || || |||||||||||
Sbjct 290158 TATCCAGAAGGAGTCTACTTTGCATTTAGTTTT 290190
Score = 100 bits (110), Expect = 2e-16
Identities = 152/214 (71%), Gaps = 2/214 (1%)
Strand=Plus/Plus
Query 23610 AATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCAC 23669
|||||| ||||| || || || || || || ||||| |||||| | || || || | |
Sbjct 290206 AATGCAAATTTTTGTAAAGACACTGACTGGGAAAACTATCACTTTGGAGGTGGAAGCTTC 290265
Query 23670 GGACACTGTTGAAA-TATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATC 23728
|| || | |||| | |||| |||| | || || || ||||| | || |||||||
Sbjct 290266 TGATACAATAGAAAATGTTAAGGCAAAGA-TTCAAGATAAGGAAGGCATTCCTCCAGATC 290324
Query 23729 AACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACA 23788
|||| | | || || ||||| || ||||||||||| | |||||| || || || |
Sbjct 290325 AACAAAGACTGATTTTCGCCGGAAAGCAACTGGAAGATGGACGCACATTGTCGGACTATA 290384
Query 23789 ACATACAAAAAGAGTCCACATTACATTTAGTTTT 23822
| || || || ||||| || || |||||||||||
Sbjct 290385 ATATCCAGAAGGAGTCTACTTTGCATTTAGTTTT 290418
Score = 95.1 bits (104), Expect = 8e-15
Identities = 149/211 (71%), Gaps = 2/211 (1%)
Strand=Plus/Plus
Query 23610 AATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCAC 23669
|||||| || || || || || || || || || || ||||| || |||||||| || |
Sbjct 289750 AATGCAAATATTTGTGAAGACACTGACTGGCAAGACTATCACACTGGAAGTTGAGCCCTC 289809
Query 23670 GGACACTGTTGAAA-TATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATC 23728
||||| | |||| | |||| | |||| || || || ||||| | || ||||| |
Sbjct 289810 TGACACAATCGAAAATGTTAAGGCCAAAA-TTCAAGATAAGGAAGGCATTCCTCCAGACC 289868
Query 23729 AACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACA 23788
|||| | | || ||||| || || ||||| || || | ||| || || || ||||
Sbjct 289869 AACAAAGGCTTATTTTTGCTGGAAAGCAACTTGAGGATGGACGTACACTATCAGACTACA 289928
Query 23789 ACATACAAAAAGAGTCCACATTACATTTAGT 23819
| || || ||||| || || |||||||||||
Sbjct 289929 ATATTCAGAAAGAATCTACTTTACATTTAGT 289959
Score = 87.8 bits (96), Expect = 1e-12
Identities = 147/213 (69%), Gaps = 0/213 (0%)
Strand=Plus/Plus
Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670
||||| || ||||| ||||| | || || ||||| ||||| | ||||| || | |
Sbjct 288611 ATGCAAATCTTCGTAAAAACTTTAACTGGGAAAACCATCACATTGGAAGTGGAAGCTTCT 288670
Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730
|| || | |||| |||| ||| ||| ||||| ||||| | || |||||||||
Sbjct 288671 GATACAATCGAAAACGTAAAGGCAAAGATTCAAGACAAGGAAGGCATCCCTCCAGATCAA 288730
Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAAC 23790
|| | |||| || ||||| || ||| ||||||| | ||||| | || || ||
Sbjct 288731 CAAAGACTAATTTTCGCCGGAAAGCAATTGGAAGATGGGCGCACACTCTCAGACTATAAT 288790
Query 23791 ATACAAAAAGAGTCCACATTACATTTAGTTTTA 23823
|| || || || || || || || |||||||||
Sbjct 288791 ATCCAGAAGGAATCTACTTTGCACTTAGTTTTA 288823
Score = 86.0 bits (94), Expect = 4e-12
Identities = 147/211 (70%), Gaps = 2/211 (1%)
Strand=Plus/Plus
Query 23610 AATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCAC 23669
|||||| || || || || || || || || ||||| ||||| | ||||| || | |
Sbjct 289066 AATGCAAATATTTGTAAAGACACTGACTGGCAAAACTATCACATTGGAAGTGGAGGCTTC 289125
Query 23670 GGACACTGTTGAAA-TATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATC 23728
|| || | |||| | |||| |||||| || ||||||||||| | || || || |
Sbjct 289126 TGATACAATAGAAAATGTTAAGGCAAAAA-TTCAAGACAAAGAAGGCATTCCTCCTGACC 289184
Query 23729 AACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACA 23788
||||| | | || ||||| || ||||| |||||||| | ||| || | ||||| |
Sbjct 289185 AACAGAGGCTTATTTTTGCAGGAAAACAGCTGGAAGATGGACGTACACTGTCAGATTATA 289244
Query 23789 ACATACAAAAAGAGTCCACATTACATTTAGT 23819
| || ||||| || || || || || || ||
Sbjct 289245 ATATTCAAAAGGAATCTACTTTGCACTTGGT 289275
Score = 84.2 bits (92), Expect = 1e-11
Identities = 139/198 (70%), Gaps = 2/198 (1%)
Strand=Plus/Plus
Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670
||||| ||||| || || || || || || ||||| |||||| | ||||| || | |
Sbjct 290435 ATGCAAATTTTTGTAAAGACACTGACTGGGAAAACTATCACTTTGGAAGTGGAAGCTTCT 290494
Query 23671 GACACTGTTGAAA-TATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729
|| || | |||| | |||| |||| | || || || ||||| | || ||||||||
Sbjct 290495 GATACAATAGAAAATGTTAAGGCAAAGA-TTCAAGATAAGGAAGGCATTCCTCCAGATCA 290553
Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789
||| | | || || ||||| || ||||||||||| | ||||| ||| || || ||
Sbjct 290554 ACAAAGACTGATTTTCGCCGGAAAGCAACTGGAAGATGGGCGCACATTATCAGACTATAA 290613
Query 23790 CATACAAAAAGAGTCCAC 23807
|| || ||||| || ||
Sbjct 290614 TATCCAGAAAGAATCTAC 290631
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 337991849108972
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