Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Heliconius_20melpomene_20melpomene_20[genbank_20GCA_5F000313835.2_20 2012-03-01] 4,309 sequences; 273,786,188 total letters Query= NC_030230.1 Length=372707 Score E Sequences producing significant alignments: (Bits) Value seq2787 147 5e-30 seq3424 138 3e-27 seq1305 138 3e-27 >seq2787 Length=76071 Score = 147 bits (162), Expect = 5e-30 Identities = 155/204 (76%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 225510 GTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCTTCTAGCTG 225569 ||| | |||||| ||||| || | |||||| || | | ||| | |||||| || ||||| Sbjct 41306 GTGCAAAGTGGACTCTTTCTGAATATTGTAGTCAGAAAGAGTACGCCCATCCTCCAGCTG 41247 Query 225570 CTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCTTGGATCTT 225629 ||| |||||||| || || |||||||| || || |||||||| || |||||||||||||| Sbjct 41246 CTTGCCAGCGAAAATGAGACGTTGTTGATCTGGGGGAATACCCTCTTTGTCTTGGATCTT 41187 Query 225630 TTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTCTTGCCCGT 225689 || ||| ||| || |||||||||| ||| || ||||| ||||| || || || || Sbjct 41186 GGCTTTAACATTTTCAATAGTGTCTGAGGGTTCAACTTCTAATGTGATAGTTTTCCCTGT 41127 Query 225690 CAAAGTTTTTATGAACACTTGCAT 225713 || || |||| || | ||||| Sbjct 41126 CAGTGTCTTTACAAAGATCTGCAT 41103 Score = 138 bits (152), Expect = 3e-27 Identities = 163/221 (74%), Gaps = 0/221 (0%) Strand=Plus/Minus Query 225493 CGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTT 225552 || || | ||| || | || || || || |||||||||| ||||| || | || || Sbjct 40639 CGCAGACGCAGTACTAAATGAAGGGTAGACTCTTTTTGGATGTTGTAGTCAGACAGGGTG 40580 Query 225553 CTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCT 225612 | ||||||||||||||||| ||||| |||||||| |||||||| || || |||||||| Sbjct 40579 CGACCATCTTCTAGCTGCTTGCCAGCAAAGATAAGACGTTGTTGATCTGGGGGAATACCC 40520 Query 225613 TCCTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAAC 225672 || || ||||| ||||| ||| ||| ||| |||||||| || | ||||| || | Sbjct 40519 TCTTTATCTTGAATCTTAGCCTTTACATTTTCAATGGTGTCAGATGGCTCCACCTCCAGA 40460 Query 225673 GTGATCGTCTTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713 || || |||||||| || | || || | || | |||||| Sbjct 40459 GTTATAGTCTTGCCTGTTAGTGTCTTGACAAATATTTGCAT 40419 Score = 136 bits (150), Expect = 9e-27 Identities = 164/223 (74%), Gaps = 0/223 (0%) Strand=Plus/Minus Query 225492 ACGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGT 225551 |||||| | || || | || || || ||||| ||||| | ||| ||||| | || || Sbjct 39956 ACGAAGCCGCAATACTAAATGTAGGGTAGATTCCTTTTGAATATTATAATCAGATAATGT 39897 Query 225552 TCTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACC 225611 | ||||||||||| || || ||||| || ||||| | ||||| || || |||||||| Sbjct 39896 ACGGCCATCTTCTAGTTGTTTTCCAGCAAAAATAAGCCTCTGTTGATCTGGGGGAATACC 39837 Query 225612 TTCCTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAA 225671 || ||||||||||||||| ||||||| |||||| ||||| || | || || ||||| Sbjct 39836 CTCTTTGTCTTGGATCTTTGCCTTCACATTTTCGATAGTGTCGGACGGCTCTACCTCTAA 39777 Query 225672 CGTGATCGTCTTGCCCGTCAAAGTTTTTATGAACACTTGCATT 225714 ||||| || || || || | ||| || | || | |||||| Sbjct 39776 AGTGATGGTTTTTCCTGTAAGAGTCTTAACAAAGATCTGCATT 39734 Score = 134 bits (148), Expect = 3e-26 Identities = 159/213 (75%), Gaps = 2/213 (1%) Strand=Plus/Minus Query 225502 AGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCT 225561 || || | ||| | ||| ||||||||||||| ||||| || | || || | |||||| Sbjct 40174 AGTACTAAGTGCAAAGTAGATTCTTTTTGGATGTTGTAGTCAGACAGTGTACGACCATCT 40115 Query 225562 TCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCT 225621 |||| ||||| || || || ||||| |||||||| || || ||||| ||||| |||||| Sbjct 40114 TCTAATTGCTTGCCCGCAAAAATAAGACGTTGTTGATCCGGAGGAATGCCTTCTTTGTCT 40055 Query 225622 TGGATCTTTTGC-TTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGT 225680 ||||| ||| || |||||| ||| || ||||| || | ||| || ||||| || || || Sbjct 40054 TGGAT-TTTAGCTTTCACATTTTCAATTGTGTCAGAAGCTTCAACTTCTAAAGTAATTGT 39996 Query 225681 CTTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713 || || || | ||||| | || | |||||| Sbjct 39995 TTTTCCAGTGAGTGTTTTAACAAAGATTTGCAT 39963 Score = 134 bits (148), Expect = 3e-26 Identities = 154/207 (74%), Gaps = 0/207 (0%) Strand=Plus/Minus Query 225492 ACGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGT 225551 |||||| | || || | || | ||| ||||||||||||| || || || | || ||| Sbjct 41552 ACGAAGACGAAGTACTAAATGCAAAGTAGATTCTTTTTGGATGTTATAGTCCGACAGAGT 41493 Query 225552 TCTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACC 225611 | ||||| |||| ||| || ||||| ||||| || || |||||||| || ||||| || Sbjct 41492 GCGGCCATCCTCTAACTGTTTACCAGCAAAGATGAGACGCTGTTGGTCTGGGGGAATGCC 41433 Query 225612 TTCCTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAA 225671 ||||| ||||||||||| ||| ||| |||||| ||||| || | ||||| || || Sbjct 41432 CTCCTTATCTTGGATCTTAGCCTTAACATTTTCGATAGTGTCGGATGGCTCCACCTCCAA 41373 Query 225672 CGTGATCGTCTTGCCCGTCAAAGTTTT 225698 ||||| ||||| || || | ||| || Sbjct 41372 AGTGATGGTCTTCCCAGTAAGAGTCTT 41346 Score = 132 bits (146), Expect = 1e-25 Identities = 157/213 (74%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 225502 AGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCT 225561 || || | ||| || || || ||||| |||| |||||| || | || || | |||||| Sbjct 41086 AGTACCAAGTGAAGGGTCGACTCTTTCTGGATATTGTAGTCAGACAGGGTGCGGCCATCT 41027 Query 225562 TCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCT 225621 || || || || |||||||||||||| |||||||| || || ||||| |||||||| ||| Sbjct 41026 TCCAGTTGTTTACCAGCGAAGATAAGACGTTGTTGATCTGGAGGAATTCCTTCCTTATCT 40967 Query 225622 TGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTC 225681 || ||||| || ||| ||| ||||||||||| | || || || || || || || Sbjct 40966 TGAATCTTAGCTTTAACATTTTCAATGGTGTCTGATGGCTCAACTTCCAAAGTTATTGTT 40907 Query 225682 TTGCCCGTCAAAGTTTTTATGAACACTTGCATT 225714 || || || | ||||| | || | ||||||| Sbjct 40906 TTTCCAGTAAGTGTTTTGACAAATATTTGCATT 40874 Score = 122 bits (134), Expect = 2e-22 Identities = 164/226 (73%), Gaps = 2/226 (1%) Strand=Plus/Minus Query 225492 ACGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGT 225551 |||||| | || || | ||| ||||| ||||||||||| | ||| || || | | ||| Sbjct 39728 ACGAAGACGCAATACCAAGTGAAGAGTAGATTCTTTTTGAATATTATAGTCAGAAAGAGT 39669 Query 225552 TCTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACC 225611 | || ||||| | ||||| |||||||| || | |||||||| || || ||||| || Sbjct 39668 GCGTCCGTCTTCCAATTGCTTTCCAGCGAAAATCAAACGTTGTTGATCTGGAGGAATGCC 39609 Query 225612 TTCCTTGTCTTGGATCTTTTGC-TTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTA 225670 |||||||||||| || ||| || || ||| ||| || || || || | ||| || || | Sbjct 39608 TTCCTTGTCTTGAAT-TTTGGCTTTTACATTTTCAATAGTATCGGAAGGTTCAACTTCCA 39550 Query 225671 ACGTGATCGTCTTGCCCGTCAAAGTTTTTATGAACACTTGCATTTT 225716 | || || || || ||||| | ||||| | || | |||||||| Sbjct 39549 AAGTAATGGTTTTACCCGTAAGTGTTTTCACAAAGATCTGCATTTT 39504 Score = 120 bits (132), Expect = 7e-22 Identities = 156/213 (73%), Gaps = 2/213 (1%) Strand=Plus/Minus Query 225502 AGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCT 225561 || || | ||| || || || ||||| || | ||||||||| | |||||| | |||||| Sbjct 40858 AGCACTAAGTGCAGGGTTGACTCTTTCTGAATATTGTAATCAGACAAAGTGCGACCATCT 40799 Query 225562 TCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCT 225621 || | ||||| ||||| || || || ||||||||||| || || || || ||||| || Sbjct 40798 TCCAATTGCTTTCCAGCAAAAATGAGACGTTGTTGGTCTGGGGGGATGCCCTCCTTATCC 40739 Query 225622 TGGATCTTTTGC-TTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGT 225680 || || ||| || || ||| ||||| ||||| || | ||| || || | || || || Sbjct 40738 TGTAT-TTTAGCTTTGACATTCTCGATTGTGTCAGATGGTTCTACTTCCAGGGTAATGGT 40680 Query 225681 CTTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713 ||| || ||||| ||||| | || | |||||| Sbjct 40679 CTTTCCAGTCAATGTTTTGACAAATATTTGCAT 40647 Score = 100 bits (110), Expect = 7e-16 Identities = 148/207 (71%), Gaps = 2/207 (1%) Strand=Plus/Minus Query 225493 CGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTT 225552 || || | ||| || || || || || || || || |||| ||||| || | || || Sbjct 40411 CGCAGACGCAGTACTAGATGAAGGGTAGACTCCTTCTGGATGTTGTAGTCAGACAGGGTG 40352 Query 225553 CTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCT 225612 | |||||||| | ||||| ||||| |||||||| || || || || || || || || Sbjct 40351 CGACCATCTTCCAATTGCTTACCAGCAAAGATAAGACGCTGCTGATCAGGTGGGATGCCC 40292 Query 225613 TCCTTGTCTTGGATCTTTTGC-TTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAA 225671 || ||||||||||| ||| || || ||| ||| || || || |||| |||||| || | Sbjct 40291 TCTTTGTCTTGGAT-TTTAGCTTTTACATTTTCAATAGTATCAGAGGGTTCCACTTCCAG 40233 Query 225672 CGTGATCGTCTTGCCCGTCAAAGTTTT 225698 || || ||||| || || | ||||| Sbjct 40232 GGTAATGGTCTTTCCAGTTAGGGTTTT 40206 >seq3424 Length=494560 Score = 138 bits (152), Expect = 3e-27 Identities = 153/204 (75%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 225510 GTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCTTCTAGCTG 225569 ||| | ||| ||||| || |||| ||| || || | | || | ||||||||| | || Sbjct 288814 GTGCAAAGTAGATTCCTTCTGGATATTATAGTCTGAGAGTGTGCGCCCATCTTCCAATTG 288755 Query 225570 CTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCTTGGATCTT 225629 ||| || ||||| || |||| |||||| || || || || |||||||||||||| ||||| Sbjct 288754 CTTTCCGGCGAAAATTAGTCTTTGTTGATCTGGAGGGATGCCTTCCTTGTCTTGAATCTT 288695 Query 225630 TTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTCTTGCCCGT 225689 | ||| || |||||| || || || | |||||| || || ||||| || || || || Sbjct 288694 TGCCTTTACGTTTTCGATTGTATCAGAAGCTTCCACTTCCAATGTGATGGTTTTCCCAGT 288635 Query 225690 CAAAGTTTTTATGAACACTTGCAT 225713 |||||||||| ||| | |||||| Sbjct 288634 TAAAGTTTTTACGAAGATTTGCAT 288611 Score = 136 bits (150), Expect = 9e-27 Identities = 149/198 (75%), Gaps = 0/198 (0%) Strand=Plus/Minus Query 225516 AGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCTTCTAGCTGCTTCCC 225575 ||| || || || |||| ||| || || | ||| || | |||||||| || ||||| || Sbjct 290176 AGTAGACTCCTTCTGGATATTATAGTCCGACAATGTGCGTCCATCTTCCAGTTGCTTTCC 290117 Query 225576 AGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCTTGGATCTTTTGCTT 225635 ||||| || |||| |||||| || || ||||| |||||||||||||| |||||| ||| Sbjct 290116 GGCGAAAATCAGTCTTTGTTGATCTGGAGGAATGCCTTCCTTGTCTTGAATCTTTGCCTT 290057 Query 225636 CACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTCTTGCCCGTCAAAGT 225695 ||| ||| || ||||| || | ||||| || || || || || ||||| ||||| || Sbjct 290056 AACATTTTCTATTGTGTCAGAAGCCTCCACTTCCAAGGTAATAGTTTTGCCAGTCAATGT 289997 Query 225696 TTTTATGAACACTTGCAT 225713 ||| | || | |||||| Sbjct 289996 TTTCACAAAAATTTGCAT 289979 >seq1305 Length=286731 Score = 138 bits (152), Expect = 3e-27 Identities = 166/223 (74%), Gaps = 2/223 (1%) Strand=Plus/Plus Query 225493 CGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTT 225552 ||||||| || ||||| || | |||||||| ||||| | ||||| || | ||| || Sbjct 24764 CGAAGTCGAAGCACAAGATGCAATGTGGATTCCTTTTGAATGTTGTAGTCAGACAATGTA 24823 Query 225553 CTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCT 225612 | ||||||||||| || || ||||| ||||| | ||||| ||||| || ||||||||| Sbjct 24824 CGTCCATCTTCTAGTTGTTTACCAGCAAAGATCAAACGTTGCTGGTCTGGTGGAATACCT 24883 Query 225613 TCCTTGTCTTGGATCTTTTGC-TTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAA 225671 ||||| |||||||| ||| || || ||| ||| || || || |||| ||||| || | Sbjct 24884 TCCTTATCTTGGAT-TTTAGCTTTTACATTTTCTATAGTATCGGAGGCCTCCACCTCGAG 24942 Query 225672 CGTGATCGTCTTGCCCGTCAAAGTTTTTATGAACACTTGCATT 225714 || || || || ||||| | || || | ||| | ||||||| Sbjct 24943 GGTAATGGTTTTACCCGTAAGGGTCTTGACGAAAATTTGCATT 24985 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1192465361470446