Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Heliconius_20melpomene_20melpomene_20[genbank_20GCA_5F000313835.2_20 2012-03-01] 4,309 sequences; 273,786,188 total letters Query= NC_030240.1 Length=128058 Score E Sequences producing significant alignments: (Bits) Value seq3463 219 3e-52 seq3424 111 1e-19 seq2787 98.7 8e-16 >seq3463 Length=282612 Score = 219 bits (242), Expect = 3e-52 Identities = 635/966 (66%), Gaps = 21/966 (2%) Strand=Plus/Minus Query 109141 GCGTACTTTGTCGAATGGGGTGTGTACGGCCGCAATTTTCCCGTGGACAAAGTGCCGTTG 109200 || ||||| || ||||||||||| || | || || |||||||| | || | Sbjct 183009 GCCTACTTCGTAGAATGGGGTGTCTATCCTAGGAAATTCCCCGTGGATCGTATACCTATA 182950 Query 109201 CCCAATTTATCGCATTTGCTGTACGGTTTTATTCCAATATGTGGCGGCGACGGCATCAAC 109260 || ||| | | |||||||| ||||| ||||| ||||| || ||||| ||||||||||| Sbjct 182949 CCTAATCTTACTCATTTGCTCTACGGCTTTATCCCAATTTGCGGCGGTGACGGCATCAAT 182890 Query 109261 GACGCCCTCAAAACCATTCCCGGCAGTTTTGACGCTTTGCAACGATCGTGCCGCGGTCGC 109320 || | ||| || |||||||| | || | || || || || |||| || Sbjct 182889 GATAGTTTAAAAGAGATCGAAGGCAGTTTCCAAGCACTACAGCGGTCCTGTAGCGGCCGT 182830 Query 109321 GACGATTTCAAAGTGTCCATACACGACATTTGGGCCGCGGTGCAAAAACCGCAAAAAGGC 109380 || || |||||||| || || ||||| ||||| || | |||||||| |||||||| Sbjct 182829 GAGGACTTCAAAGTCTCAATCCACGATCCATGGGCAGCATTACAAAAACCACAAAAAGGA 182770 Query 109381 GTGACCGCGTGGAACGAGCCGTACAAAGGCAACTTTGGACAATTGATGGCGGCCAAATTG 109440 || | | ||||||||||| ||||||||||||||||| ||||| ||| | ||| Sbjct 182769 TTGTCTTCATGGAACGAGCCTTACAAAGGCAACTTTGGCCAATTAATGTCACTAAAACAA 182710 Query 109441 GCAAATCCTCACGTTAAAATTCTACCGTCCATAGGCGGGTGGACG-TTGTCGGACCCGTT 109499 || ||| | | || ||||| || || || || ||||||||| ||| || || | Sbjct 182709 GCCCGCCCTGAATTGAAGATTCTTCCCTCTATTGGTGGGTGGACGCTTGCCGATCCTTTC 182650 Query 109500 TTATTTT--ATGCACGATTCGGCGAAAAGAGCCACATTCGTTGAATCGGTGCGCGAATTT 109557 || |||| | || | | | || ||| | ||| || | || || || ||| Sbjct 182649 TTCTTTTTAGTTGACAAAT---CTAAGAGAACACGATTTGTGCAGTCAGTAAAGGAGTTT 182593 Query 109558 TTACAAGTGTGGAAATTCTTTGACGGCGTCGACATTGATTGGGAGTTTCCGGGCGGCAAG 109617 | | | ||||||||||| || || || || || ||||||||||| || || ||||| Sbjct 182592 CTTCTAACATGGAAATTCTTCGATGGTGTTGATATCGATTGGGAGTTCCCTGGTGGCAAA 182533 Query 109618 GGTGCCAATCCGAGTCTCGGCGACGCA-ACGCGCGACAGCAAAACGTACATTGCGTTGTT 109676 ||||| || || ||||| | || | | | | | ||| | ||| | Sbjct 182532 GGTGCTAACCCTGACCTCGGTAGCCCAGAAGATGGTGATTGTTATGTAAGT----TTGAT 182477 Query 109677 AAAAGAGTTGCGCGCCATGTTGGACGACTTGCAAACGGCCACCAA---CAAAACGTACGA 109733 ||||| || || | ||| | ||||| || | || | || || | ||||| Sbjct 182476 GAAAGAATTACGTGAGATGCTCGACGA---GCTCTCAGCTAAGAATGGTAAGAAATACGA 182420 Query 109734 ATTGACGAGCGCCATTAGCGCCGGTTACGATAAAATTGACGTGGTCGATTACGCGTCGGC 109793 ||| || || |||||||| || | |||||||| | || || || || | ||| Sbjct 182419 ATTAACTTCTGCTATTAGCGCTGGATGGGATAAAATCCAAGTTGTAGACTATGGCAAGGC 182360 Query 109794 GCAACAATATTTGGACAAAATATTTTTAATGACATACGATTTCAAAGGCGCTTGGTCAAA 109853 ||| | ||| |||| | || || || |||| ||||| ||||| || || |||||||| Sbjct 182359 TCAAAATTATATGGATCATATTTTCTTGATGAGTTACGACTTCAAGGGAGCCTGGTCAAA 182300 Query 109854 -CACGGACTTAGGCTATCACACGACTGTGTACGCGCCCACGTGGAATCCAAACGAATTGT 109912 || ||| || |||| ||| | |||||||||| |||||||||| || ||| | Sbjct 182299 TGACACTCTT-GGACATCAAACGCCATTGTACGCGCCAGCGTGGAATCCCAAGGAAACTT 182241 Query 109913 ACACGACCGATGTGGCGGTCAAAGAGCTGTTCAAACAAAAAGTGTCGCCTaaaaaaaTTA 109972 |||| | || | | || ||| | || | || |||| ||||| || ||| Sbjct 182240 ACACATCTGACTTCGGAGTAAAATACTTGCTGGCGCAGGGAGTGAATCCTAAGAAGATTG 182181 Query 109973 TAATTGGCGTAGCGATGTACGGCCGCGGCTGGACGGGCG-TCGTGCACGCCGACGACGCG 110031 || | || || || ||||| || || || ||||| |||| || || | | | ||| Sbjct 182180 TAGTAGGTGTTGCTATGTATGGTCGTGGTTGGACTGGCGTTCATG-ATTACAAAGACAAC 182122 Query 110032 AATCCGTTTTTGGGCATCGCCTCCGGTCCCGTGGAAGGCACTTGGGAAAACGGCGTGGTG 110091 | ||| || |||| ||| | || || || |||| |||||| || |||| ||||| Sbjct 182121 ATTCCCTTCACAGGCAACGCTACTGGACCTGTCAAAGGAACTTGGCAAGACGGAGTGGTT 182062 Query 110092 GACTAT 110097 |||||| Sbjct 182061 GACTAT 182056 >seq3424 Length=494560 Score = 111 bits (122), Expect = 1e-19 Identities = 151/211 (72%), Gaps = 0/211 (0%) Strand=Plus/Minus Query 101029 CACCATGTGCAAAGTTGATTCTTTTTGAATATTGTAATCGGCCATAGTTTTGGAATCTTC 101088 ||||| ||||||||| ||||| ||||||||||| ||||| | || || |||||| Sbjct 289276 CACCAAGTGCAAAGTAGATTCCTTTTGAATATTATAATCTGACAGTGTACGTCCATCTTC 289217 Query 101089 CAATTGTTTGCCCGCATATATAAGCCTTTGTTGGTCTACGGGCACGCCTTCTTTGTCGGC 101148 || ||||| || ||| | |||||||| |||||||| || | |||||||||||| Sbjct 289216 CAGCTGTTTTCCTGCAAAAATAAGCCTCTGTTGGTCAGGAGGAATGCCTTCTTTGTCTTG 289157 Query 101149 AATTTTTTGTTTCACATCGGCCACCGTCTCTGTGGACGTTGTTTCGACGGTAATAGTTTT 101208 ||||||| || |||| | | || || | | | ||| | || |||||||| Sbjct 289156 AATTTTTGCCTTAACATTTTCTATTGTATCAGAAGCCTCCACTTCCAATGTGATAGTTTT 289097 Query 101209 GCCCGTCAATGTTTTAATAAAAATTTGCATT 101239 ||| |||| ||| || | ||| ||||||||| Sbjct 289096 GCCAGTCAGTGTCTTTACAAATATTTGCATT 289066 Score = 87.8 bits (96), Expect = 1e-12 Identities = 144/206 (70%), Gaps = 4/206 (2%) Strand=Plus/Minus Query 101036 TGCAAAGTTGATTCTTTTTGAATATTGTAATCGGCCATAGTTTTGGA--ATCTTCCAATT 101093 || ||||| |||||||| ||||||||||| || | ||||| | | ||| || | || Sbjct 289953 TGTAAAGTAGATTCTTTCTGAATATTGTAGTCTG--ATAGTGTACGTCCATCCTCAAGTT 289896 Query 101094 GTTTGCCCGCATATATAAGCCTTTGTTGGTCTACGGGCACGCCTTCTTTGTCGGCAATTT 101153 | || || ||| | |||||||||||||||||| || | |||||| || || ||||| Sbjct 289895 GCTTTCCAGCAAAAATAAGCCTTTGTTGGTCTGGAGGAATGCCTTCCTTATCTTGAATTT 289836 Query 101154 TTTGTTTCACATCGGCCACCGTCTCTGTGGACGTTGTTTCGACGGTAATAGTTTTGCCCG 101213 | || |||| | | || || | || | ||| | || ||||| ||||| | Sbjct 289835 TGGCCTTAACATTTTCGATTGTGTCAGAGGGCTCAACTTCCAGTGTGATAGTCTTGCCAG 289776 Query 101214 TCAATGTTTTAATAAAAATTTGCATT 101239 ||| ||| || | ||| ||||||||| Sbjct 289775 TCAGTGTCTTCACAAATATTTGCATT 289750 Score = 87.8 bits (96), Expect = 1e-12 Identities = 141/203 (69%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 101036 TGCAAAGTTGATTCTTTTTGAATATTGTAATCGGCCATAGTTTTGGAATCTTCCAATTGT 101095 |||||||| || || || || ||||| || || | || || |||||||| ||| Sbjct 290181 TGCAAAGTAGACTCCTTCTGGATATTATAGTCCGACAATGTGCGTCCATCTTCCAGTTGC 290122 Query 101096 TTGCCCGCATATATAAGCCTTTGTTGGTCTACGGGCACGCCTTCTTTGTCGGCAATTTTT 101155 || || || | || || |||||||| ||| || | |||||| ||||| ||| ||| Sbjct 290121 TTTCCGGCGAAAATCAGTCTTTGTTGATCTGGAGGAATGCCTTCCTTGTCTTGAATCTTT 290062 Query 101156 TGTTTCACATCGGCCACCGTCTCTGTGGACGTTGTTTCGACGGTAATAGTTTTGCCCGTC 101215 || |||| | | || || | | | ||| | ||||||||||||||| ||| Sbjct 290061 GCCTTAACATTTTCTATTGTGTCAGAAGCCTCCACTTCCAAGGTAATAGTTTTGCCAGTC 290002 Query 101216 AATGTTTTAATAAAAATTTGCAT 101238 |||||||| | |||||||||||| Sbjct 290001 AATGTTTTCACAAAAATTTGCAT 289979 >seq2787 Length=76071 Score = 98.7 bits (108), Expect = 8e-16 Identities = 150/212 (71%), Gaps = 4/212 (2%) Strand=Plus/Minus Query 101029 CACCATGTGCAAAGTTGATTCTTTTTGAATATTGTAATCGGCCATAGTTTTGGAATCTTC 101088 ||| | ||||| ||||| ||||| |||||||||||||| | || ||| |||||| Sbjct 40856 CACTAAGTGCAGGGTTGACTCTTTCTGAATATTGTAATCAGACAAAGTGCGACCATCTTC 40797 Query 101089 CAATTGTTTGCCCGCATATATAAGCCTTTGTTGGTCTACGGGCACGCCTTCTTTGTCGGC 101148 |||||| || || ||| | || || | |||||||||| ||| | ||| || || || Sbjct 40796 CAATTGCTTTCCAGCAAAAATGAGACGTTGTTGGTCTGGGGGGATGCCCTCCTTATCCTG 40737 Query 101149 AATTTTTTGTTTCACATCGGCCACCGTCTCTGTGGACGTTGT--TTCGACGGTAATAGTT 101206 ||||| ||| |||| | | || || | | ||| | ||| | |||||| || Sbjct 40736 TATTTTAGCTTTGACATTCTCGATTGTGTCAGATG--GTTCTACTTCCAGGGTAATGGTC 40679 Query 101207 TTGCCCGTCAATGTTTTAATAAAAATTTGCAT 101238 || || ||||||||||| | ||| |||||||| Sbjct 40678 TTTCCAGTCAATGTTTTGACAAATATTTGCAT 40647 Score = 96.9 bits (106), Expect = 3e-15 Identities = 146/206 (71%), Gaps = 4/206 (2%) Strand=Plus/Minus Query 101035 GTGCAAAGTTGATTCTTTTTGAATATTGTAATCGGCCATAGTTTTGGA--ATCTTCCAAT 101092 ||||||||| ||||||||||| || ||||| || | || || | || |||||| ||| Sbjct 40166 GTGCAAAGTAGATTCTTTTTGGATGTTGTAGTCAGACA--GTGTACGACCATCTTCTAAT 40109 Query 101093 TGTTTGCCCGCATATATAAGCCTTTGTTGGTCTACGGGCACGCCTTCTTTGTCGGCAATT 101152 || ||||||||| | ||||| | |||||| || || | |||||||||||| ||| Sbjct 40108 TGCTTGCCCGCAAAAATAAGACGTTGTTGATCCGGAGGAATGCCTTCTTTGTCTTGGATT 40049 Query 101153 TTTTGTTTCACATCGGCCACCGTCTCTGTGGACGTTGTTTCGACGGTAATAGTTTTGCCC 101212 || |||||||| | | || || | | ||| | ||||| ||||| || Sbjct 40048 TTAGCTTTCACATTTTCAATTGTGTCAGAAGCTTCAACTTCTAAAGTAATTGTTTTTCCA 39989 Query 101213 GTCAATGTTTTAATAAAAATTTGCAT 101238 || | |||||||| ||| |||||||| Sbjct 39988 GTGAGTGTTTTAACAAAGATTTGCAT 39963 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 409639286279031