Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Heliconius_20melpomene_20melpomene_20[genbank_20GCA_5F000313835.2_20
2012-03-01] 4,309 sequences; 273,786,188 total letters
Query= NC_030240.1
Length=128058
Score E
Sequences producing significant alignments: (Bits) Value
seq3463 219 3e-52
seq3424 111 1e-19
seq2787 98.7 8e-16
>seq3463
Length=282612
Score = 219 bits (242), Expect = 3e-52
Identities = 635/966 (66%), Gaps = 21/966 (2%)
Strand=Plus/Minus
Query 109141 GCGTACTTTGTCGAATGGGGTGTGTACGGCCGCAATTTTCCCGTGGACAAAGTGCCGTTG 109200
|| ||||| || ||||||||||| || | || || |||||||| | || |
Sbjct 183009 GCCTACTTCGTAGAATGGGGTGTCTATCCTAGGAAATTCCCCGTGGATCGTATACCTATA 182950
Query 109201 CCCAATTTATCGCATTTGCTGTACGGTTTTATTCCAATATGTGGCGGCGACGGCATCAAC 109260
|| ||| | | |||||||| ||||| ||||| ||||| || ||||| |||||||||||
Sbjct 182949 CCTAATCTTACTCATTTGCTCTACGGCTTTATCCCAATTTGCGGCGGTGACGGCATCAAT 182890
Query 109261 GACGCCCTCAAAACCATTCCCGGCAGTTTTGACGCTTTGCAACGATCGTGCCGCGGTCGC 109320
|| | ||| || |||||||| | || | || || || || |||| ||
Sbjct 182889 GATAGTTTAAAAGAGATCGAAGGCAGTTTCCAAGCACTACAGCGGTCCTGTAGCGGCCGT 182830
Query 109321 GACGATTTCAAAGTGTCCATACACGACATTTGGGCCGCGGTGCAAAAACCGCAAAAAGGC 109380
|| || |||||||| || || ||||| ||||| || | |||||||| ||||||||
Sbjct 182829 GAGGACTTCAAAGTCTCAATCCACGATCCATGGGCAGCATTACAAAAACCACAAAAAGGA 182770
Query 109381 GTGACCGCGTGGAACGAGCCGTACAAAGGCAACTTTGGACAATTGATGGCGGCCAAATTG 109440
|| | | ||||||||||| ||||||||||||||||| ||||| ||| | |||
Sbjct 182769 TTGTCTTCATGGAACGAGCCTTACAAAGGCAACTTTGGCCAATTAATGTCACTAAAACAA 182710
Query 109441 GCAAATCCTCACGTTAAAATTCTACCGTCCATAGGCGGGTGGACG-TTGTCGGACCCGTT 109499
|| ||| | | || ||||| || || || || ||||||||| ||| || || |
Sbjct 182709 GCCCGCCCTGAATTGAAGATTCTTCCCTCTATTGGTGGGTGGACGCTTGCCGATCCTTTC 182650
Query 109500 TTATTTT--ATGCACGATTCGGCGAAAAGAGCCACATTCGTTGAATCGGTGCGCGAATTT 109557
|| |||| | || | | | || ||| | ||| || | || || || |||
Sbjct 182649 TTCTTTTTAGTTGACAAAT---CTAAGAGAACACGATTTGTGCAGTCAGTAAAGGAGTTT 182593
Query 109558 TTACAAGTGTGGAAATTCTTTGACGGCGTCGACATTGATTGGGAGTTTCCGGGCGGCAAG 109617
| | | ||||||||||| || || || || || ||||||||||| || || |||||
Sbjct 182592 CTTCTAACATGGAAATTCTTCGATGGTGTTGATATCGATTGGGAGTTCCCTGGTGGCAAA 182533
Query 109618 GGTGCCAATCCGAGTCTCGGCGACGCA-ACGCGCGACAGCAAAACGTACATTGCGTTGTT 109676
||||| || || ||||| | || | | | | | ||| | ||| |
Sbjct 182532 GGTGCTAACCCTGACCTCGGTAGCCCAGAAGATGGTGATTGTTATGTAAGT----TTGAT 182477
Query 109677 AAAAGAGTTGCGCGCCATGTTGGACGACTTGCAAACGGCCACCAA---CAAAACGTACGA 109733
||||| || || | ||| | ||||| || | || | || || | |||||
Sbjct 182476 GAAAGAATTACGTGAGATGCTCGACGA---GCTCTCAGCTAAGAATGGTAAGAAATACGA 182420
Query 109734 ATTGACGAGCGCCATTAGCGCCGGTTACGATAAAATTGACGTGGTCGATTACGCGTCGGC 109793
||| || || |||||||| || | |||||||| | || || || || | |||
Sbjct 182419 ATTAACTTCTGCTATTAGCGCTGGATGGGATAAAATCCAAGTTGTAGACTATGGCAAGGC 182360
Query 109794 GCAACAATATTTGGACAAAATATTTTTAATGACATACGATTTCAAAGGCGCTTGGTCAAA 109853
||| | ||| |||| | || || || |||| ||||| ||||| || || ||||||||
Sbjct 182359 TCAAAATTATATGGATCATATTTTCTTGATGAGTTACGACTTCAAGGGAGCCTGGTCAAA 182300
Query 109854 -CACGGACTTAGGCTATCACACGACTGTGTACGCGCCCACGTGGAATCCAAACGAATTGT 109912
|| ||| || |||| ||| | |||||||||| |||||||||| || ||| |
Sbjct 182299 TGACACTCTT-GGACATCAAACGCCATTGTACGCGCCAGCGTGGAATCCCAAGGAAACTT 182241
Query 109913 ACACGACCGATGTGGCGGTCAAAGAGCTGTTCAAACAAAAAGTGTCGCCTaaaaaaaTTA 109972
|||| | || | | || ||| | || | || |||| ||||| || |||
Sbjct 182240 ACACATCTGACTTCGGAGTAAAATACTTGCTGGCGCAGGGAGTGAATCCTAAGAAGATTG 182181
Query 109973 TAATTGGCGTAGCGATGTACGGCCGCGGCTGGACGGGCG-TCGTGCACGCCGACGACGCG 110031
|| | || || || ||||| || || || ||||| |||| || || | | | |||
Sbjct 182180 TAGTAGGTGTTGCTATGTATGGTCGTGGTTGGACTGGCGTTCATG-ATTACAAAGACAAC 182122
Query 110032 AATCCGTTTTTGGGCATCGCCTCCGGTCCCGTGGAAGGCACTTGGGAAAACGGCGTGGTG 110091
| ||| || |||| ||| | || || || |||| |||||| || |||| |||||
Sbjct 182121 ATTCCCTTCACAGGCAACGCTACTGGACCTGTCAAAGGAACTTGGCAAGACGGAGTGGTT 182062
Query 110092 GACTAT 110097
||||||
Sbjct 182061 GACTAT 182056
>seq3424
Length=494560
Score = 111 bits (122), Expect = 1e-19
Identities = 151/211 (72%), Gaps = 0/211 (0%)
Strand=Plus/Minus
Query 101029 CACCATGTGCAAAGTTGATTCTTTTTGAATATTGTAATCGGCCATAGTTTTGGAATCTTC 101088
||||| ||||||||| ||||| ||||||||||| ||||| | || || ||||||
Sbjct 289276 CACCAAGTGCAAAGTAGATTCCTTTTGAATATTATAATCTGACAGTGTACGTCCATCTTC 289217
Query 101089 CAATTGTTTGCCCGCATATATAAGCCTTTGTTGGTCTACGGGCACGCCTTCTTTGTCGGC 101148
|| ||||| || ||| | |||||||| |||||||| || | ||||||||||||
Sbjct 289216 CAGCTGTTTTCCTGCAAAAATAAGCCTCTGTTGGTCAGGAGGAATGCCTTCTTTGTCTTG 289157
Query 101149 AATTTTTTGTTTCACATCGGCCACCGTCTCTGTGGACGTTGTTTCGACGGTAATAGTTTT 101208
||||||| || |||| | | || || | | | ||| | || ||||||||
Sbjct 289156 AATTTTTGCCTTAACATTTTCTATTGTATCAGAAGCCTCCACTTCCAATGTGATAGTTTT 289097
Query 101209 GCCCGTCAATGTTTTAATAAAAATTTGCATT 101239
||| |||| ||| || | ||| |||||||||
Sbjct 289096 GCCAGTCAGTGTCTTTACAAATATTTGCATT 289066
Score = 87.8 bits (96), Expect = 1e-12
Identities = 144/206 (70%), Gaps = 4/206 (2%)
Strand=Plus/Minus
Query 101036 TGCAAAGTTGATTCTTTTTGAATATTGTAATCGGCCATAGTTTTGGA--ATCTTCCAATT 101093
|| ||||| |||||||| ||||||||||| || | ||||| | | ||| || | ||
Sbjct 289953 TGTAAAGTAGATTCTTTCTGAATATTGTAGTCTG--ATAGTGTACGTCCATCCTCAAGTT 289896
Query 101094 GTTTGCCCGCATATATAAGCCTTTGTTGGTCTACGGGCACGCCTTCTTTGTCGGCAATTT 101153
| || || ||| | |||||||||||||||||| || | |||||| || || |||||
Sbjct 289895 GCTTTCCAGCAAAAATAAGCCTTTGTTGGTCTGGAGGAATGCCTTCCTTATCTTGAATTT 289836
Query 101154 TTTGTTTCACATCGGCCACCGTCTCTGTGGACGTTGTTTCGACGGTAATAGTTTTGCCCG 101213
| || |||| | | || || | || | ||| | || ||||| ||||| |
Sbjct 289835 TGGCCTTAACATTTTCGATTGTGTCAGAGGGCTCAACTTCCAGTGTGATAGTCTTGCCAG 289776
Query 101214 TCAATGTTTTAATAAAAATTTGCATT 101239
||| ||| || | ||| |||||||||
Sbjct 289775 TCAGTGTCTTCACAAATATTTGCATT 289750
Score = 87.8 bits (96), Expect = 1e-12
Identities = 141/203 (69%), Gaps = 0/203 (0%)
Strand=Plus/Minus
Query 101036 TGCAAAGTTGATTCTTTTTGAATATTGTAATCGGCCATAGTTTTGGAATCTTCCAATTGT 101095
|||||||| || || || || ||||| || || | || || |||||||| |||
Sbjct 290181 TGCAAAGTAGACTCCTTCTGGATATTATAGTCCGACAATGTGCGTCCATCTTCCAGTTGC 290122
Query 101096 TTGCCCGCATATATAAGCCTTTGTTGGTCTACGGGCACGCCTTCTTTGTCGGCAATTTTT 101155
|| || || | || || |||||||| ||| || | |||||| ||||| ||| |||
Sbjct 290121 TTTCCGGCGAAAATCAGTCTTTGTTGATCTGGAGGAATGCCTTCCTTGTCTTGAATCTTT 290062
Query 101156 TGTTTCACATCGGCCACCGTCTCTGTGGACGTTGTTTCGACGGTAATAGTTTTGCCCGTC 101215
|| |||| | | || || | | | ||| | ||||||||||||||| |||
Sbjct 290061 GCCTTAACATTTTCTATTGTGTCAGAAGCCTCCACTTCCAAGGTAATAGTTTTGCCAGTC 290002
Query 101216 AATGTTTTAATAAAAATTTGCAT 101238
|||||||| | ||||||||||||
Sbjct 290001 AATGTTTTCACAAAAATTTGCAT 289979
>seq2787
Length=76071
Score = 98.7 bits (108), Expect = 8e-16
Identities = 150/212 (71%), Gaps = 4/212 (2%)
Strand=Plus/Minus
Query 101029 CACCATGTGCAAAGTTGATTCTTTTTGAATATTGTAATCGGCCATAGTTTTGGAATCTTC 101088
||| | ||||| ||||| ||||| |||||||||||||| | || ||| ||||||
Sbjct 40856 CACTAAGTGCAGGGTTGACTCTTTCTGAATATTGTAATCAGACAAAGTGCGACCATCTTC 40797
Query 101089 CAATTGTTTGCCCGCATATATAAGCCTTTGTTGGTCTACGGGCACGCCTTCTTTGTCGGC 101148
|||||| || || ||| | || || | |||||||||| ||| | ||| || || ||
Sbjct 40796 CAATTGCTTTCCAGCAAAAATGAGACGTTGTTGGTCTGGGGGGATGCCCTCCTTATCCTG 40737
Query 101149 AATTTTTTGTTTCACATCGGCCACCGTCTCTGTGGACGTTGT--TTCGACGGTAATAGTT 101206
||||| ||| |||| | | || || | | ||| | ||| | |||||| ||
Sbjct 40736 TATTTTAGCTTTGACATTCTCGATTGTGTCAGATG--GTTCTACTTCCAGGGTAATGGTC 40679
Query 101207 TTGCCCGTCAATGTTTTAATAAAAATTTGCAT 101238
|| || ||||||||||| | ||| ||||||||
Sbjct 40678 TTTCCAGTCAATGTTTTGACAAATATTTGCAT 40647
Score = 96.9 bits (106), Expect = 3e-15
Identities = 146/206 (71%), Gaps = 4/206 (2%)
Strand=Plus/Minus
Query 101035 GTGCAAAGTTGATTCTTTTTGAATATTGTAATCGGCCATAGTTTTGGA--ATCTTCCAAT 101092
||||||||| ||||||||||| || ||||| || | || || | || |||||| |||
Sbjct 40166 GTGCAAAGTAGATTCTTTTTGGATGTTGTAGTCAGACA--GTGTACGACCATCTTCTAAT 40109
Query 101093 TGTTTGCCCGCATATATAAGCCTTTGTTGGTCTACGGGCACGCCTTCTTTGTCGGCAATT 101152
|| ||||||||| | ||||| | |||||| || || | |||||||||||| |||
Sbjct 40108 TGCTTGCCCGCAAAAATAAGACGTTGTTGATCCGGAGGAATGCCTTCTTTGTCTTGGATT 40049
Query 101153 TTTTGTTTCACATCGGCCACCGTCTCTGTGGACGTTGTTTCGACGGTAATAGTTTTGCCC 101212
|| |||||||| | | || || | | ||| | ||||| ||||| ||
Sbjct 40048 TTAGCTTTCACATTTTCAATTGTGTCAGAAGCTTCAACTTCTAAAGTAATTGTTTTTCCA 39989
Query 101213 GTCAATGTTTTAATAAAAATTTGCAT 101238
|| | |||||||| ||| ||||||||
Sbjct 39988 GTGAGTGTTTTAACAAAGATTTGCAT 39963
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 409639286279031
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