Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Heliconius_20melpomene_20melpomene_20[genbank_20GCA_5F000313835.2_20 2012-03-01] 4,309 sequences; 273,786,188 total letters Query= NC_030656.1 Length=133492 Score E Sequences producing significant alignments: (Bits) Value seq1351 82.4 7e-11 >seq1351 Length=825266 Score = 82.4 bits (90), Expect = 7e-11 Identities = 167/244 (68%), Gaps = 7/244 (3%) Strand=Plus/Plus Query 4552 CAAAATCACAATGCAAACCTTCGTCTCTGCTAATCAGTTCGTTAGAAAACGTTAATCCGG 4611 |||||| || | || |||| | || || ||| ||||| ||| || || ||||||| Sbjct 601377 CAAAATTACGAAACATACCT-CATCCCTAGAAATAAGTTCATTACTGAAAGTCAATCCGG 601435 Query 4612 GCATTAAACCTCTCTTTTTAAGCCAAAATATAGCGGCAAATGACCCAGAAAAGAATATGC 4671 |||| | ||||| ||||| | ||||||||| | ||||| || || || ||||| | Sbjct 601436 GCATCAGACCTCGTTTTTTCAACCAAAATATTGAAGCAAAGCTGCCTGAGAAAAATATTC 601495 Query 4672 CTTCTACGGCGGCAAACGCTACTAATCGGGACCCGAACG-AGCTGGCTT--TGTCTTTAA 4728 | || || || ||||| || | || || || || | ||||| ||| || | | Sbjct 601496 CCTCAACTGCTGCAAAAGCAATTATACGTTCTCCAAATGTAGCTGTCTTGCTGCC---GA 601552 Query 4729 TCCATTTTAATGCCCAGTTAGCTTTTTTCTTAACGCACGGAATTGTGTATATAGCGTTAA 4788 |||| | ||| ||||||| || || |||||||| || || | || | || || || | Sbjct 601553 TCCACTGTAACGCCCAGTCTGCCTTCTTCTTAACACATGGTAGAGTTTCAATTGCATTGA 601612 Query 4789 ATAA 4792 |||| Sbjct 601613 ATAA 601616 Score = 82.4 bits (90), Expect = 7e-11 Identities = 72/90 (80%), Gaps = 0/90 (0%) Strand=Plus/Plus Query 5042 TAAATCAACTTCTTCAACAGTCCAAAACGACGCTTCCGCTTTTTTGTACATAGACCAAAT 5101 ||| || |||||||| ||||||||||||| ||||| |||||||| ||||| ||| || Sbjct 602575 TAAGTCTACTTCTTCTGCAGTCCAAAACGATGCTTCAGCTTTTTTATACATCTGCCATAT 602634 Query 5102 ATCAGGATACTGAATCGGAAGTATGACAAA 5131 ||| ||||| || || || | ||| ||||| Sbjct 602635 ATCTGGATATTGGATTGGGAATATAACAAA 602664 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 427027173089897