Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Heliconius_20melpomene_20melpomene_20[genbank_20GCA_5F000313835.2_20 2012-03-01] 4,309 sequences; 273,786,188 total letters Query= NC_031033.1 Length=217124 Score E Sequences producing significant alignments: (Bits) Value seq3345 583 1e-161 seq1351 107 3e-18 >seq3345 Length=207354 Score = 583 bits (646), Expect = 1e-161 Identities = 1035/1497 (69%), Gaps = 17/1497 (1%) Strand=Plus/Minus Query 76762 TTATTTTATTCTTATCCAATGTAAACTGAATTGGAGAAGATGCGGGTTTTGTACGTAGAT 76821 |||||||| || || | ||||||||||| | | | ||| |||||||| |||| | Sbjct 113397 TTATTTTACCTTTGTCTACAGTAAACTGAATAGCATTTGCTGCTGGTTTTGTGCGTAAGT 113338 Query 76822 AGTACATACCAGTTTTTAGACCCAGACTCCATCCGTAGAAATGCATGCTTGTCAGTTTGG 76881 ||||||| || ||||||| ||||| |||| ||| |||||| || || ||||| Sbjct 113337 AGTACATTCCTGTTTTTAAACCCATTTTCCAAGCGTGGAAATGAATCGACGTAAGTTTTC 113278 Query 76882 AATAACTAGGATCGGCTATATGAATATTCATCGACTGACTTTGATCGATGAAAGCTCCTC 76941 ||| |||| | || | ||| || || | || |||||||| || || |||||||||| Sbjct 113277 CATAGTTAGGTTTAGCAACATGTATGTTAAAAGATTGACTTTGGTCTATAAAAGCTCCTC 113218 Query 76942 TATCAGCCGCCATTTTTATAATGGTCTTTTGAGGAATTTCCCAAATAGTTTTGAAAACTT 77001 ||||||| ||||| | ||| || || | | ||| ||||| | |||||| | | | Sbjct 113217 TATCAGCTGCCATCTGTATGGATGTTTTCAGTGAAATCTCCCATACGGTTTTGTACAAAT 113158 Query 77002 GTTTGATATCATCTGGAAGGTTTGTATTTT---GAATGGAACCACCATCTGATATAATTG 77058 | | || || | |||| ||| | ||| | || || ||| | ||||||| Sbjct 113157 CTCTTATTTCTTTAGGAATTTTTTCAATTTCTTGTATAGATCCATTGTTGTATATAATAA 113098 Query 77059 TATTCTTTATATCATCATTCCACAATTTCCTCTCTGTTAAAACTCTAAGGAGATGAGGAT 77118 ||| || ||||| |||| |||||| | | || ||| | | || |||||| | | Sbjct 113097 GATTTTTCATATCTTCATCCCACAAATCAGCCCGAGTCAAATCAGTCAGAAGATGATGGT 113038 Query 77119 TAACTATTTGAAATTCTCCAGACAATACTCTACGAGTGTAAATATTACTGGTATATGGTT 77178 | |||| ||||||||||||| || ||||| | ||||||||| ||| | |||| Sbjct 113037 TCACTACAGGAAATTCTCCAGATAAGACTCTTCTTTGGTAAATATTTGATGTAAAGGGTT 112978 Query 77179 CCACAGATTCATTGTTTCCCAAAATTTGAGCAGTAGAAGCAGTTGGCATAGGTGCCACCA 77238 | | ||||||| |||| || | |||||| |||||||| ||||| ||||| || || | || Sbjct 112977 CAAAAGATTCAGTGTTGCCAAGAATTTGTGCAGTAGAGGCAGTCGGCATTGGAGCTATCA 112918 Query 77239 ATAAACTATTTCTGAGACCATGTGTTCTGATTTTATCTTTTAGATATTTCCAATCCCAAA 77298 ||| | ||| | | ||||||| || || || ||||| || ||| ||||||| Sbjct 112917 ATAGAGAATTGCGCAAACCATGTTTTGCTATCTTTTCTTTGAGGGCAGCCCAGTCCCAAA 112858 Query 77299 GATCTGAAGGTACAACATCCCAAAGATCGTATTGTAGAATTCCGTTACTAGCATATGATC 77358 | |||| ||| ||||| | ||| || || || || || | || || | || Sbjct 112857 GGTCTGTAGGAGTTTTGTCCCACATATCATACTGGAGGATACCTTGGCTTGC-TGGACTC 112799 Query 77359 CATT-ATATGTTTCATAAGGTCCTTCTGTTTCAGCTAGTTCACAACTCGCTTCCAATGCT 77417 | || |||||| || | |||||| ||||||||| ||||||||| ||||| ||||| Sbjct 112798 CCTTGATATGTGCTGTATGCACCTTCTTTTTCAGCTAATTCACAACTAGCTTCTAATGCA 112739 Query 77418 CCGTAATAAATTGTTTCGAAAATCTTCTTATTGAGATCTTGTGCTTCAATACTATCAAAC 77477 || |||||||||||||| || || | | ||||||| | ||||| ||| || | Sbjct 112738 CCATAATAAATTGTTTCAAATATTTGTTGATTGAGAAGTATTGCTTTCTCACTTTCGTAA 112679 Query 77478 GGATAATGTAAAAGA-ATAAAGGCATCTGCTAATCCCTGAACTCCAATACCAATAGGTCT 77536 | | | | | | | | ||| |||||||| | |||||||| ||||||||||||||||| Sbjct 112678 GAA-ATTCTCATCAACACAAACGCATCTGCCATGCCCTGAACACCAATACCAATAGGTCT 112620 Query 77537 ATGTCTCTTATTGGAAATTTTAGCTTCTGGAATAGGATAATAATTAATGTCTATAATTTT 77596 ||||||| |||| ||| |||| ||||| || | ||||||| |||||| || |||| ||| Sbjct 112619 ATGTCTCATATTTGAAGTTTTTGCTTCAGGGACAGGATAAAAATTAACATCAATAACTTT 112560 Query 77597 ATTGAGATTTCTAACAACTACTTTAACCACGTCCTTTAGTTTAAGAAAATCAAATCTTCC 77656 || | |||| | || | || | || |||| ||| ||||| |||||| Sbjct 112559 GTTTAAATTTTGAGTTACAATCTTTGTGATTTCTTTTAATTTTTTAAAATTAAATCTATT 112500 Query 77657 ATCTATAACAAACATGTTCAAAGCTATAGATGCTAGATTACAAACTGCTACCTCATTAGC 77716 || | |||||||||||| | ||||| || || || || || ||||| || |||| | Sbjct 112499 ATTTTCAACAAACATGTTAAGTGCTATGGAAGCAAGGTTGCACACTGCCACTTCATCTTC 112440 Query 77717 GTTGGCATATTGTATTATCTCGGTACATAGATTACTACATTTGATAGTGCCCAGATTTTG 77776 | ||||| | | ||| || || ||||| |||||||| |||||||| ||||||| Sbjct 112439 TGAAGTGTATTGCACAACCTCAGTGCAAAGATTGCTACATTTAATAGTGCCAAGATTTTT 112380 Query 77777 TTGGTTGCTCTTTTTATTGCATGAGTCCTTATAAAGAATAAACGGAGTCCCGGTTTCAAT 77836 ||| || |||||| | || || | |||||||| | || | || || || || || | Sbjct 112379 TTGATTACTCTTTCTGTTACAAGCATCCTTATACAACATGTATGGTGTACCAGTCTCTAC 112320 Query 77837 CTGTGATTCGATAATAGATTTCCAGACGACTCT--AGCTTTTATCATAGATTTGTA--TC 77892 || | ||| ||||| || ||||| | ||||| |||| | | | | ||| || || Sbjct 112319 TTGGGCTTCTATAATTGACTTCCATA--ACTCTTGAGCTCTGAC--TTGTTTTATAAATC 112264 Query 77893 GCCTCTCTCTTTCATATTGAGTATATAGCCGTTCAAATTCATCTCCCCAAACA-TCATCC 77951 | | ||| |||||||| | |||||| ||||||||| ||||| || || ||| | Sbjct 112263 GTTTTTCTTCTTCATATTTGGCATATAGTTCTTCAAATTCCTCTCCA-AAGCAGTCAGCG 112205 Query 77952 AATCCAGGGCATTCATTTGGGCACATCAATGACCAGTCACCATCTTCCTTAACTCGTTTC 78011 | ||||| || |||| || ||||| | ||| | |||| | | |||| |||| Sbjct 112204 AGGCCAGGACAATCATGAGGACACATGAGACTCCAAACTTCATCCTTTTCTACTCTTTTC 112145 Query 78012 ATAAAGAGATCAGGTATCCATAGAGCAATAAATAGATCTCGGGTTCTATGTTCTTCATTT 78071 ||||| ||||| |||||||||| ||| ||| || |||| | ||| |||||| || Sbjct 112144 ATAAACAGATCTGGTATCCATAAGGCATAAAACAGTTCTCTAGCTCTCATTTCTTCCTTA 112085 Query 78072 CCTGTATTCTTTTTAAGATCGAGAAACTCCATAATATCAGAATGCCATGGTTCTAGATAT 78131 || || ||||| || | ||| | || || | || || | |||||| || |||| ||| Sbjct 112084 CCCGTGTTCTTCTTTAAATCCAAGAATTCAAATATGTCTGCATGCCAAGGCTCTAAATAA 112025 Query 78132 ATTGCCATAACTCCAGGTCGTTTATTACCTCCCTGATCTATATATCTGGCGGTGTTATTA 78191 || || | | || || ||||| || || || ||||||| ||||||||| || || ||| Sbjct 112024 ATCGCAAATGCACCGGGACGTTTGTTTCCACCTTGATCTACATATCTGGCAGTATTGTTA 111965 Query 78192 TAAACTCTCAACATTGGAATAATACCGTTAGATGTTCCATTTGTTCCAGAAATATAA 78248 || |||||||||||||| | | ||| || || ||||| || |||| || ||| Sbjct 111964 TACACTCTCAACATTGGCACTAGACCATTCGAGACCCCATTAGTGCCAGCTATGTAA 111908 Score = 114 bits (126), Expect = 2e-20 Identities = 92/111 (83%), Gaps = 0/111 (0%) Strand=Plus/Minus Query 78542 CTTATTATTTATTTTCAACAAGTATGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTA 78601 |||||| ||||| |||||||| |||||| ||||||||||||| ||||||||||| ||||| Sbjct 111270 CTTATTGTTTATCTTCAACAAATATGATCTTTCCAAAGTTTTGAAACCAAAATAATTGTA 111211 Query 78602 TGAAAAGTCTCTCTCGTAAATAATAACAGAATTTAGTTTATCTTTGTATTT 78652 | ||| ||||| || |||| |||| |||| | || ||| || |||| ||| Sbjct 111210 TTTAAAATCTCTATCATAAACAATAGCAGAGTCTAATTTGTCCTTGTTTTT 111160 >seq1351 Length=825266 Score = 107 bits (118), Expect = 3e-18 Identities = 89/109 (82%), Gaps = 0/109 (0%) Strand=Plus/Plus Query 48627 TTTGATATATCTACTTCTTCAGCTGTCCAAAATGATGCCTCTGCTTTTTTATACATATTC 48686 || |||| ||||||||||| || |||||||| ||||| || |||||||||||||| | | Sbjct 602570 TTGGATAAGTCTACTTCTTCTGCAGTCCAAAACGATGCTTCAGCTTTTTTATACATCTGC 602629 Query 48687 CATATATCACTGTATTGGATTGGGAAAATAACAAATCTATTTGGATTTT 48735 |||||||| |||||||||||||| |||||||| | | ||||||| Sbjct 602630 CATATATCTGGATATTGGATTGGGAATATAACAAAACGTCTAGGATTTT 602678 Score = 100 bits (110), Expect = 4e-16 Identities = 183/262 (70%), Gaps = 11/262 (4%) Strand=Plus/Plus Query 48123 AAATGTTTAAACATTAAACATGCAAAATCACAATGAAGACCTTCATCTCTACTAATTAAT 48182 ||| | ||||| ||| || |||||| || | | |||| |||| ||| ||| | | Sbjct 601358 AAAAGCTTAAA---TAAGAATACAAAATTACGAAACATACCT-CATCCCTAGAAATAAGT 601413 Query 48183 TCGTTAGAAAATGTGAGACCGGGCATTAGTCCACGTTTTTTGAGCCAAAATATTGCCGCG 48242 || ||| || || | |||||||| || || |||||||| | ||||||||||| || Sbjct 601414 TCATTACTGAAAGTCAATCCGGGCATCAGACCTCGTTTTTTCAACCAAAATATTGAAGC- 601472 Query 48243 AAAGAT-CCAGAAAAGAATATGCCTTCTACGGCCGCAAATGCGGTAAGTCTCTCTCC--- 48298 |||| | || || || ||||| || || || || ||||| || | | | ||||| Sbjct 601473 AAAGCTGCCTGAGAAAAATATTCCCTCAACTGCTGCAAAAGCAATTATACGTTCTCCAAA 601532 Query 48299 -GTAACTGGCTTCGTTGTGTATCCACCGTTGTGCCCAATCAGCCTTCTTCTTTACACAAG 48357 ||| ||| ||| | || |||||| || ||||| || ||||||||||| ||||| | Sbjct 601533 TGTAGCTGTCTT-GCTGCCGATCCACTGTAACGCCCAGTCTGCCTTCTTCTTAACACATG 601591 Query 48358 GCATTGTTTCTATAGCATTAAA 48379 | | ||||| || ||||| || Sbjct 601592 GTAGAGTTTCAATTGCATTGAA 601613 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 694631383401760