Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Heliconius_20melpomene_20melpomene_20[genbank_20GCA_5F000313835.2_20 2012-03-01] 4,309 sequences; 273,786,188 total letters Query= NC_031465.1 Length=360610 Score E Sequences producing significant alignments: (Bits) Value seq1305 111 4e-19 seq3424 109 1e-18 seq2787 109 1e-18 >seq1305 Length=286731 Score = 111 bits (122), Expect = 4e-19 Identities = 156/219 (71%), Gaps = 0/219 (0%) Strand=Plus/Plus Query 151887 AGTCTGAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTC 151946 |||| || |||||||| | || || || ||||| |||||||| || | || || | Sbjct 24767 AGTCGAAGCACAAGATGCAATGTGGATTCCTTTTGAATGTTGTAGTCAGACAATGTACGT 24826 Query 151947 CCATCTTCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCC 152006 ||||||||||| ||| || || ||||| | | |||||||| | | || |||||| Sbjct 24827 CCATCTTCTAGTTGTTTACCAGCAAAGATCAAACGTTGCTGGTCTGGTGGAATACCTTCC 24886 Query 152007 TTTTCTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTA 152066 || ||||| ||||| ||| ||| | |||| | || || ||| || || || ||| Sbjct 24887 TTATCTTGGATTTTAGCTTTTACATTTTCTATAGTATCGGAGGCCTCCACCTCGAGGGTA 24946 Query 152067 ATAGTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCATT 152105 || ||||| ||||| || ||||| ||||| | |||||| Sbjct 24947 ATGGTTTTACCCGTAAGGGTCTTGACGAAAATTTGCATT 24985 >seq3424 Length=494560 Score = 109 bits (120), Expect = 1e-18 Identities = 158/221 (71%), Gaps = 4/221 (2%) Strand=Plus/Minus Query 151893 AGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCT 151952 || || || || | |||||| ||||| || ||||||||||| | || || | |||||| Sbjct 289050 AGTACTAGGTGCAAAGTAGATTCTTTCTGAATGTTGTAATCAGATAGTGTGCGTCCATCT 288991 Query 151953 TCTAG--GCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTT 152010 || || ||||| || || || ||||| || ||||| || | | ||||| || || | Sbjct 288990 TCAAGCTGCTTT--CCAGCAAAAATAAGTCTTTGCTGATCTGGGGGAATTCCCTCTTTAT 288933 Query 152011 CTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAG 152070 | |||||||| ||| ||| | || | | || ||| ||| ||||| | ||| |||| Sbjct 288932 CCTGAATTTTCGCTTTAACATTTTCAATTGTATCAGAAGGCTCAACTTCCAAAGTGATAG 288873 Query 152071 TTTTGCCCGTGAGAGTCTTCACGAAGACCTGCATTTTACCC 152111 | ||||| || || ||||| ||||| | |||||| |||| Sbjct 288872 TCTTGCCAGTCAGTGTCTTTACGAAAATTTGCATTCCACCC 288832 Score = 107 bits (118), Expect = 4e-18 Identities = 150/209 (72%), Gaps = 1/209 (0%) Strand=Plus/Minus Query 151897 CAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCTTCTA 151956 |||| || | |||||| || ||||| || || ||||| | | || | |||||||| | Sbjct 289273 CAAG-TGCAAAGTAGATTCCTTTTGAATATTATAATCTGACAGTGTACGTCCATCTTCCA 289215 Query 151957 GGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGAA 152016 | ||| || || || ||||||||||| ||||| | | || ||||| || ||||||| Sbjct 289214 GCTGTTTTCCTGCAAAAATAAGCCTCTGTTGGTCAGGAGGAATGCCTTCTTTGTCTTGAA 289155 Query 152017 TTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTTTTGC 152076 ||||| || ||| | |||| | || ||| ||| ||||| | || |||||||||| Sbjct 289154 TTTTTGCCTTAACATTTTCTATTGTATCAGAAGCCTCCACTTCCAATGTGATAGTTTTGC 289095 Query 152077 CCGTGAGAGTCTTCACGAAGACCTGCATT 152105 | || || ||||| || || | |||||| Sbjct 289094 CAGTCAGTGTCTTTACAAATATTTGCATT 289066 Score = 105 bits (116), Expect = 2e-17 Identities = 148/206 (72%), Gaps = 4/206 (2%) Strand=Plus/Minus Query 151901 ATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCTTCTAG--G 151958 ||| | ||||||||| || ||||| || || || | || || | |||||||| || | Sbjct 290182 ATGCAAAGTAGACTCCTTCTGGATATTATAGTCCGACAATGTGCGTCCATCTTCCAGTTG 290123 Query 151959 CTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGAATT 152018 |||| |||||||| || || || || || || | | || |||||||| |||||||| Sbjct 290122 CTTT--CCGGCGAAAATCAGTCTTTGTTGATCTGGAGGAATGCCTTCCTTGTCTTGAATC 290065 Query 152019 TTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTTTTGCCC 152078 ||| || ||| | |||| |||| ||| ||| ||||| | |||||||||||||| Sbjct 290064 TTTGCCTTAACATTTTCTATTGTGTCAGAAGCCTCCACTTCCAAGGTAATAGTTTTGCCA 290005 Query 152079 GTGAGAGTCTTCACGAAGACCTGCAT 152104 || | || ||||| || | ||||| Sbjct 290004 GTCAATGTTTTCACAAAAATTTGCAT 289979 Score = 104 bits (114), Expect = 5e-17 Identities = 153/215 (71%), Gaps = 4/215 (2%) Strand=Plus/Minus Query 151893 AGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCT 151952 || || | ||| | |||||| ||||| || || ||||| || | || || | ||||| Sbjct 289962 AGTACTAAATGTAAAGTAGATTCTTTCTGAATATTGTAGTCTGATAGTGTACGTCCATCC 289903 Query 151953 TCTAG--GCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTT 152010 || || ||||| || || || |||||||| || ||||| | | || |||||||| | Sbjct 289902 TCAAGTTGCTTT--CCAGCAAAAATAAGCCTTTGTTGGTCTGGAGGAATGCCTTCCTTAT 289845 Query 152011 CTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAG 152070 |||||||||| || ||| | || | |||| || ||| ||||| || || |||| Sbjct 289844 CTTGAATTTTGGCCTTAACATTTTCGATTGTGTCAGAGGGCTCAACTTCCAGTGTGATAG 289785 Query 152071 TTTTGCCCGTGAGAGTCTTCACGAAGACCTGCATT 152105 | ||||| || || |||||||| || | |||||| Sbjct 289784 TCTTGCCAGTCAGTGTCTTCACAAATATTTGCATT 289750 >seq2787 Length=76071 Score = 109 bits (120), Expect = 1e-18 Identities = 147/205 (72%), Gaps = 0/205 (0%) Strand=Plus/Minus Query 151901 ATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCTTCTAGGCT 151960 ||| || ||||| || ||||| || || ||||| | ||| || | ||||||||||| Sbjct 39938 ATGTAGGGTAGATTCCTTTTGAATATTATAATCAGATAATGTACGGCCATCTTCTAGTTG 39879 Query 151961 TTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGAATTTT 152020 ||| || || || ||||||||||| || || | | || || || || ||||| || || Sbjct 39878 TTTTCCAGCAAAAATAAGCCTCTGTTGATCTGGGGGAATACCCTCTTTGTCTTGGATCTT 39819 Query 152021 TTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTTTTGCCCGT 152080 | || ||| | || | |||| || |||||| || | ||| || ||||| || || Sbjct 39818 TGCCTTCACATTTTCGATAGTGTCGGACGGCTCTACCTCTAAAGTGATGGTTTTTCCTGT 39759 Query 152081 GAGAGTCTTCACGAAGACCTGCATT 152105 |||||||| || |||| ||||||| Sbjct 39758 AAGAGTCTTAACAAAGATCTGCATT 39734 Score = 109 bits (120), Expect = 1e-18 Identities = 156/220 (71%), Gaps = 0/220 (0%) Strand=Plus/Minus Query 151886 GAGTCTGAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCT 151945 ||| | ||| || | ||||| || |||||||| ||||| ||||| || | | || | Sbjct 41093 GAGACGGAGTACCAAGTGAAGGGTCGACTCTTTCTGGATATTGTAGTCAGACAGGGTGCG 41034 Query 151946 CCCATCTTCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTC 152005 |||||||| || ||| || ||||||||||| | || || || | | |||||||| Sbjct 41033 GCCATCTTCCAGTTGTTTACCAGCGAAGATAAGACGTTGTTGATCTGGAGGAATTCCTTC 40974 Query 152006 CTTTTCTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGT 152065 ||| |||||||| || ||| ||| | || | | ||||||| ||| ||||| | ||| Sbjct 40973 CTTATCTTGAATCTTAGCTTTAACATTTTCAATGGTGTCTGATGGCTCAACTTCCAAAGT 40914 Query 152066 AATAGTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCATT 152105 || ||||| || || || || || || || | |||||| Sbjct 40913 TATTGTTTTTCCAGTAAGTGTTTTGACAAATATTTGCATT 40874 Score = 104 bits (114), Expect = 5e-17 Identities = 150/212 (71%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 151893 AGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCT 151952 || || | |||||| ||||||||||||||||||||||| || | | || | |||||| Sbjct 40630 AGTACTAAATGAAGGGTAGACTCTTTTTGGATGTTGTAGTCAGACAGGGTGCGACCATCT 40571 Query 151953 TCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCT 152012 ||||| || || || |||||||| | || || || | | || || || || ||| Sbjct 40570 TCTAGCTGCTTGCCAGCAAAGATAAGACGTTGTTGATCTGGGGGAATACCCTCTTTATCT 40511 Query 152013 TGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTT 152072 ||||| || || ||| | || | | |||| || ||| || || ||||| ||||| Sbjct 40510 TGAATCTTAGCCTTTACATTTTCAATGGTGTCAGATGGCTCCACCTCCAGAGTTATAGTC 40451 Query 152073 TTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 ||||| || || ||||| || || | ||||| Sbjct 40450 TTGCCTGTTAGTGTCTTGACAAATATTTGCAT 40419 Score = 100 bits (110), Expect = 7e-16 Identities = 152/213 (71%), Gaps = 5/213 (2%) Strand=Plus/Minus Query 151897 CAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCTTCTA 151956 |||| ||||||||||| |||||||| || || || || | | ||| | || ||||| | Sbjct 39713 CAAG-TGAAGAGTAGATTCTTTTTGAATATTATAGTCAGAAAGAGTGCGTCCGTCTTCCA 39655 Query 151957 G--GCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTG 152014 ||||| || ||||| || | | || || || | | || |||||||| ||||| Sbjct 39654 ATTGCTTT--CCAGCGAAAATCAAACGTTGTTGATCTGGAGGAATGCCTTCCTTGTCTTG 39597 Query 152015 AATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTTTT 152074 |||||| ||| ||| | || | | || ||| || ||||| | |||||| ||||| Sbjct 39596 AATTTTGGCTTTTACATTTTCAATAGTATCGGAAGGTTCAACTTCCAAAGTAATGGTTTT 39537 Query 152075 GCCCGTGAGAGTCTTCACGAAGACCTGCATTTT 152107 ||||| || || ||||| |||| ||||||||| Sbjct 39536 ACCCGTAAGTGTTTTCACAAAGATCTGCATTTT 39504 Score = 96.9 bits (106), Expect = 8e-15 Identities = 140/198 (71%), Gaps = 0/198 (0%) Strand=Plus/Minus Query 151907 AGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCTTCTAGGCTTTTCCC 151966 |||||| ||||||||||||||||| || | | || | |||||||||| || || Sbjct 40160 AGTAGATTCTTTTTGGATGTTGTAGTCAGACAGTGTACGACCATCTTCTAATTGCTTGCC 40101 Query 151967 GGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGAATTTTTTGTTT 152026 || || ||||| | || || |||| | || ||||| || ||||| ||||| ||| Sbjct 40100 CGCAAAAATAAGACGTTGTTGATCCGGAGGAATGCCTTCTTTGTCTTGGATTTTAGCTTT 40041 Query 152027 GACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTTTTGCCCGTGAGAGT 152086 ||| | || | |||| ||| || ||||| | |||||| ||||| || ||||| || Sbjct 40040 CACATTTTCAATTGTGTCAGAAGCTTCAACTTCTAAAGTAATTGTTTTTCCAGTGAGTGT 39981 Query 152087 CTTCACGAAGACCTGCAT 152104 || || |||| ||||| Sbjct 39980 TTTAACAAAGATTTGCAT 39963 Score = 89.7 bits (98), Expect = 1e-12 Identities = 147/212 (69%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 151893 AGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCT 151952 || || |||||||| |||||||| || ||||||||||| || | | || | |||||| Sbjct 40402 AGTACTAGATGAAGGGTAGACTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGACCATCT 40343 Query 151953 TCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCT 152012 || | || || || |||||||| | |||||| || | | ||| || || || ||| Sbjct 40342 TCCAATTGCTTACCAGCAAAGATAAGACGCTGCTGATCAGGTGGGATGCCCTCTTTGTCT 40283 Query 152013 TGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTT 152072 || ||||| ||| ||| | || | | || || || ||||| || ||||| || Sbjct 40282 TGGATTTTAGCTTTTACATTTTCAATAGTATCAGAGGGTTCCACTTCCAGGGTAATGGTC 40223 Query 152073 TTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 || || || || || || || || | |||||| Sbjct 40222 TTTCCAGTTAGGGTTTTAACAAAAATCTGCAT 40191 Score = 89.7 bits (98), Expect = 1e-12 Identities = 147/212 (69%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 151893 AGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCT 151952 || || | ||| | |||||| |||||||||||||| || || | | ||| | ||||| Sbjct 41542 AGTACTAAATGCAAAGTAGATTCTTTTTGGATGTTATAGTCCGACAGAGTGCGGCCATCC 41483 Query 151953 TCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCT 152012 |||| ||| || || ||||| || | ||| ||||| | | || || ||||| ||| Sbjct 41482 TCTAACTGTTTACCAGCAAAGATGAGACGCTGTTGGTCTGGGGGAATGCCCTCCTTATCT 41423 Query 152013 TGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTT 152072 || || || || ||| | || | |||| || ||| || || | ||| || || Sbjct 41422 TGGATCTTAGCCTTAACATTTTCGATAGTGTCGGATGGCTCCACCTCCAAAGTGATGGTC 41363 Query 152073 TTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 || || || |||||||| || |||| |||||| Sbjct 41362 TTCCCAGTAAGAGTCTTAACAAAGATCTGCAT 41331 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1153757098635339