Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Heliconius_20melpomene_20melpomene_20[genbank_20GCA_5F000313835.2_20 2012-03-01] 4,309 sequences; 273,786,188 total letters Query= NC_032105.1 Length=33562 Score E Sequences producing significant alignments: (Bits) Value seq3063 385 1e-102 >seq3063 Length=7092 Score = 385 bits (426), Expect = 1e-102 Identities = 338/421 (80%), Gaps = 0/421 (0%) Strand=Plus/Plus Query 10833 GGTCAGCGCGTACGAGCAGACGGTGAAGGAGGAGATGAACTTCCAAAAGAGCTTTAACCA 10892 ||| | ||||||||||||||||||||| ||||||| ||||| ||||| ||||||||| | Sbjct 6672 GGTTACCGCGTACGAGCAGACGGTGAACCAGGAGATTAACTTTCAAAAAAGCTTTAACAA 6731 Query 10893 CCACGTCCGCACCCTGATCGCGCGAGAGGAGGTGGCCATCGGGTTGATGCATCTGTGGGA 10952 |||||| ||||| || | ||||| ||||||||||| || || |||||||||||||||| Sbjct 6732 CCACGTGCGCACGCTTGTGGCGCGCGAGGAGGTGGCTATAGGACTGATGCATCTGTGGGA 6791 Query 10953 CTTTGTGGAGGCTTTCGTGCAGAATCCCACCAGCAAGCCCCTGACGGCTCAGCTCTTTCT 11012 |||||| || | | ||| || || | |||||||| || | ||| ||||| || || Sbjct 6792 CTTTGTAAGCGCGCTGGAGCAAAACCCAAATAGCAAGCCGCTCATGGCGCAGCTGTTCCT 6851 Query 11013 GATCGTGCAACACAGCCGCGAGAACGAGGCGTTTAGGGAGGCCATGCTTAACATCGCGGA 11072 || ||||| |||||| | || |||||||| || ||||| || |||| ||||| | || Sbjct 6852 TATAGTGCAGCACAGCAGGGACAACGAGGCATTCAGGGATGCGCTGCTAAACATAGTAGA 6911 Query 11073 GCCCGAGGGCCGCTGGCTCTTGGACCTGATTAACATCCTGCAGAGCATCGTGGTCCAGGA 11132 |||||||||||||||||| | || |||| ||||| ||||||||||| ||||| ||||| Sbjct 6912 GCCCGAGGGCCGCTGGCTGCTCGATTTGATAAACATTCTGCAGAGCATAGTGGTGCAGGA 6971 Query 11133 GCGCTCGCTGAGTCTGGCCGACAAGGTGGCGGCCATCAACTACAGCATGCTGTCCCTGGG 11192 |||| |||| ||||| ||||||||||| ||||| ||||| |||||| ||||| Sbjct 6972 GCGCAGCTTGAGCCTGGCTGACAAGGTGGCCGCCATTAACTATTCCATGCTCAGTCTGGG 7031 Query 11193 CAAGTTTTACGCCCGCAAGATCTACAAGACCCCGTTCGTCCCCATAGACAAGGAGGTGAA 11252 ||||||||||||||||||||| ||| | ||||| | ||| ||||||||||||||||| || Sbjct 7032 CAAGTTTTACGCCCGCAAGATATACCATACCCCTTACGTTCCCATAGACAAGGAGGTAAA 7091 Query 11253 G 11253 | Sbjct 7092 G 7092 Score = 141 bits (156), Expect = 2e-29 Identities = 134/169 (79%), Gaps = 3/169 (2%) Strand=Plus/Plus Query 14999 CAAGATGTATGGGGGCGCGAAGAGACGCTCCGATCAGCATCCCGTGCGCGTGCGCGGGCA 15058 |||||||| ||| || || |||| |||||||| || || || ||||||||||||||||| Sbjct 8 CAAGATGTTTGGCGGGGCAAAGAAGCGCTCCGACCAACACCCAGTGCGCGTGCGCGGGCA 67 Query 15059 CTTTAGGGCCCCCTGGGGCTCCCACAGCCGCGGACGGACGGTGGGCCGCACCACCGTGGA 15118 || | || ||||||||| | |||| ||||| || || |||| ||||||||||| || Sbjct 68 CTACCGCGCGCCCTGGGGCGCGCACAAACGCGGCCGCAC--TGGG-CGCACCACCGTCGA 124 Query 15119 CGACGTCATTGACAGCGTGGTGGAGGAAGCCCGCAACTACCAGCCCGCG 15167 |||| ||||||| ||||||||||| || ||||||||| |||| || Sbjct 125 TGACGCCATTGACGCGGTGGTGGAGGAGGCGCGCAACTACACGCCCACG 173 Score = 87.8 bits (96), Expect = 4e-13 Identities = 145/209 (69%), Gaps = 3/209 (1%) Strand=Plus/Plus Query 15744 CTGTTGCACGCCTCCGCTCCGCGACGCAGGGTTAACTGGAAAGGGCGGAAAGTGCGGCGC 15803 ||| ||||||| |||| || | || |||| | |||||||| || || | || Sbjct 777 CTGCTGCACGCAACCGCGCCCAGGCGGCGGGTACAGTGGAAAGGTCGACGCGTAAGACGT 836 Query 15804 GTGCTGCGGCCCGGCACGGTGGTGTCTTTCACTCCCGGGGAACGCTCCGCCTGGCGCGGA 15863 || |||| |||||||| || ||| || ||||| || |||||| || ||| Sbjct 837 GTTTTGCGACCCGGCACCACCGTAGTTTTTACGCCCGGTGAGCGCTCCACC---CGCACC 893 Query 15864 CACAAGCGCTCGTACGACGAGGTGTACGGCGACGAGGATATTCTCGAGCAGGCGTTAGAC 15923 |||||||| ||| || |||||||||||||||||||| | || |||||||| || Sbjct 894 TACAAGCGCGTGTATGATGAGGTGTACGGCGACGAGGACCTGCTTGAGCAGGCCAACGAG 953 Query 15924 AGGTCAGGGGAATTCGCGTACGGAAAGCG 15952 | ||||| || || ||||||||||| Sbjct 954 CGCCTCGGGGAGTTTGCCTACGGAAAGCG 982 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 107271310713192