Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Heliconius_20melpomene_20melpomene_20[genbank_20GCA_5F000313835.2_20
2012-03-01] 4,309 sequences; 273,786,188 total letters
Query= NC_032255.1
Length=112536
Score E
Sequences producing significant alignments: (Bits) Value
seq3463 196 3e-45
seq2787 109 4e-19
seq1305 107 1e-18
seq3424 89.7 4e-13
>seq3463
Length=282612
Score = 196 bits (216), Expect = 3e-45
Identities = 774/1208 (64%), Gaps = 41/1208 (3%)
Strand=Plus/Plus
Query 5735 TGTTACCTA-ACCCTTGATTCATGGAGTTTAACAAGTCGCCGTTGTCCGCGTCGATTTCC 5793
||||||| | |||| || ||||||| || | | ||| ||||| || ||||| | ||||
Sbjct 181818 TGTTACCGAGACCCATG-TTCATGGCATTCAGTAGGTCACCGTTATCAGCGTCCACTTCC 181876
Query 5794 CATCCAAATAGACCCCCCAGCCCCTTTTGGATGACATATTTTCCCTTGGCCGTCACGGAC 5853
|| |||| ||||| || ||| || | | |||||||| ||||| | | || ||
Sbjct 181877 CAAGCAAAGAGACCACCTAGCTTGTTATTTCTTACATATTTACCCTTTTCAATAACCGAT 181936
Query 5854 CTCTCGTCGTCGTAGGTGACGAGATCGTC-GTTG-TGGT----ACACGTAGGGCGCTTGC 5907
|| | | || ||||| || ||||| | |||| |||| | ||||| || |||||
Sbjct 181937 CTAGCATTATCATAGGTTACAAGATCTCCAGTTGATGGTCTGAAGACGTAAGGGGCTTGG 181996
Query 5908 GCCACTCCGTCGTAAT-----------TCGGGTTGGG--ATACCGGTTCGTGATGTCTTT 5954
|| || |||||||| | | ||| | || | |||| || || |
Sbjct 181997 GCGACATTGTCGTAATGGAACTCCCACTTGCCTTGAGCGATTTCA-TTCGCAATCTCCCT 182055
Query 5955 GTAGTCCACGACACCGTTTTCCCAGGAACCCTTTACGGGACCCGTGGCAGTGCCTGTGAA 6014
||||| || || |||| || ||| | || || || || || || || ||||||||||
Sbjct 182056 ATAGTCAACCACTCCGTCTTGCCAAGTTCCTTTGACAGGTCCAGTAGCGTTGCCTGTGAA 182115
Query 6015 GGGATTGTTGTTGGTGATGTTGTGGATTCCACGCCATCCCCTGCCGTACATGGCCACGCC 6074
|||| |||||| || | || | ||| ||| || | || ||||| || || ||
Sbjct 182116 GGGAATGTTGTCTTTGTAATCATGAACGCCAGTCCAACCACGACCATACATAGCAACACC 182175
Query 6075 CACCACCAATTTGTTTGGGTTCACGCTCTGATTGAGCAGGCGTTGGACGGCGAACGCGGT 6134
|| || | || || || ||||| | ||| |||| | || || |||| | |
Sbjct 182176 TACTACAATCTTCTTAGGATTCACTCCCTGCGCCAGCAAGTATTTTACTCCGAAGTCAGA 182235
Query 6135 GGTGTACTTTTCGGTGGGGTTCCATGTGGGCGCGTACAGGGGCGTCTGCAGTCCCAGATC 6194
||||| |||| |||| ||||| | |||||||||| ||||| || |||| |||
Sbjct 182236 TGTGTAAGTTTCCTTGGGATTCCACGCTGGCGCGTACAATGGCGTTTGATGTCCAAGAGT 182295
Query 6195 GGTGTTAGACCAGGCTCCCTTGAAATCGTACGTCATGACGAAAATATGATCCAGATACTC 6254
| || ||||||||||||||||| ||||| |||| | |||||||||||||| ||| |
Sbjct 182296 GTCATTTGACCAGGCTCCCTTGAAGTCGTAACTCATCAAGAAAATATGATCCATATAATT 182355
Query 6255 CTGCACCGCACCGTATTCTACAACGTTTATTTTGTCGTAGCCCCCGCTGATGGCGCTTGT 6314
|| || || || |||||||| | ||||| || | || |||| || || ||
Sbjct 182356 TTGAGCCTTGCCATAGTCTACAACTTGGATTTTATCCCATCCAGCGCTAATAGCAGAAGT 182415
Query 6315 GAGCAGATACTTGCGACCCGTGCGAGTCTCCAGACCGTCCAGCATGGACCTGAGGTCGCC 6374
| || || ||| | || || |||| ||||| | | ||
Sbjct 182416 TAATTCGTATTTCTTACCATTCTTAGCTGAGAGCTCGTCGAGCATCTCACGTAATTCTTT 182475
Query 6375 CAAGAGCGCTTGATAGGTGACGCCGTCGACTGTGACGTTTCCTAAGGCAGGATTGGCTCC 6434
|| | | ||| | || || ||| | | || | | |||| || || ||
Sbjct 182476 CATCAAACTTACATAACAATCACCATCTTCTG---GGCTACCGAGGTCAGGGTTAGCACC 182532
Query 6435 CTTGCCTCCGGGAAATTCCCAATCTATGTCCACGCCGTCGAAGAACTTCCAAGTTTCCAG 6494
||||| || || || |||||||| || || || || |||||||| ||||| ||| ||
Sbjct 182533 TTTGCCACCAGGGAACTCCCAATCGATATCAACACCATCGAAGAATTTCCATGTTAGAAG 182592
Query 6495 AAATTCTTCGACGCTCTCTACGAACACCTTTCTTTTAATCGTGTCGTTGAGCTGGTAAAA 6554
||| || | || || || || |||| ||| |||| | | | ||
Sbjct 182593 AAACTCCTTTACTGACTGCACAAATCGTGTTCTCTTAGATTTGTCAACTAAAAAGAAGAA 182652
Query 6555 GGGATCGCTCAGCGTCCACCCACCGATCGAGGGCAGGATGGTCAGAT----GCGGATTGT 6610
|||||| |||||||||||||| || ||||| || || ||| | |||| | |
Sbjct 182653 AGGATCGGCAAGCGTCCACCCACCAATAGAGGGAAGAATCTTCAATTCAGGGCGGGCT-T 182711
Query 6611 GTTTTCGTATGGCCATAAGCTGACCGAAATTACCCTTGTA----CATTTCCGAGTAGGCC 6666
||||| || | ||| | || || || || || ||||| |||| | || |
Sbjct 182712 GTTTTAGT---GACATTAATTGGCCAAAGTTGCCTTTGTAAGGCTCGTTCCATGAAGAC- 182767
Query 6667 TCGACGCCCTTCTGGGGTTTTTGTAGTGCGCCCCATATATCGTGTATGGACACCTTGAAG 6726
| || || || |||||||||| ||| ||||| |||||| || || || ||||||
Sbjct 182768 ---AATCCTTTTTGTGGTTTTTGTAATGCTGCCCATGGATCGTGGATTGAGACTTTGAAG 182824
Query 6727 TCGTCTCGTCCCTCGCACGATCGCTGCAGAGCTTCGAACGAGCCCGGCACCTGTTTCAGA 6786
|| || || || || || ||||| || |||| ||| ||| | || ||| | |
Sbjct 182825 TCCTCACGGCCGCTACAGGACCGCTGTAGTGCTTGGAAACTGCCTTCGATCTCTTTTAAA 182884
Query 6787 GCGTCGTTGATACCATCCCCTCCGCACATGGGCACGAATCCGTACAGCAGATGTGTGAGA 6846
|| ||||| || || || ||||| || || | || ||||| |||| ||| || |||
Sbjct 182885 CTATCATTGATGCCGTCACCGCCGCAAATTGGGATAAAGCCGTAGAGCAAATGAGTAAGA 182944
Query 6847 TTGGGAATGGGGATTCTGTCGGCGGGAAACTGTCTGTCGTAAACACCCCACTCCACGAAG 6906
|| || || || || | || |||| || | || || |||||||| || ||||||
Sbjct 182945 TTAGGTATAGGTATACGATCCACGGGGAATTTCCTAGGATAGACACCCCATTCTACGAAG 183004
Query 6907 TAAGCTCC 6914
|| || ||
Sbjct 183005 TAGGCACC 183012
>seq2787
Length=76071
Score = 109 bits (120), Expect = 4e-19
Identities = 167/237 (70%), Gaps = 1/237 (0%)
Strand=Plus/Minus
Query 44102 TATTT-CATTCCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTT 44160
||||| ||| || |||| ||| | || || | ||||| || ||| |||||||||||
Sbjct 40655 TATTTGCATACCACCTCGCAGACGCAGTACTAAATGAAGGGTAGACTCTTTTTGGATGTT 40596
Query 44161 GTAATCGGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTG 44220
||| || | || ||| | || || |||||||| || |||||||| | ||| || ||
Sbjct 40595 GTAGTCAGACAGGGTGCGACCATCTTCTAGCTGCTTGCCAGCAAAGATAAGACGTTGTTG 40536
Query 44221 ATCTGAAGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTTCCTATGGTGTCGGC 44280
||||| || | ||| || || || ||||| ||| | || | |||||||| |
Sbjct 40535 ATCTGGGGGAATACCCTCTTTATCTTGAATCTTAGCCTTTACATTTTCAATGGTGTCAGA 40476
Query 44281 GGATTCCACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337
| |||||||||| || || ||||| || || || ||||| || || ||||||||
Sbjct 40475 TGGCTCCACCTCCAGAGTTATAGTCTTGCCTGTTAGTGTCTTGACAAATATTTGCAT 40419
Score = 100 bits (110), Expect = 2e-16
Identities = 165/237 (70%), Gaps = 1/237 (0%)
Strand=Plus/Minus
Query 44102 TATTT-CATTCCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTT 44160
||||| ||| || |||| ||| | || || || ||||| || |||||| ||||||||
Sbjct 40427 TATTTGCATACCACCTCGCAGACGCAGTACTAGATGAAGGGTAGACTCCTTCTGGATGTT 40368
Query 44161 GTAATCGGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTG 44220
||| || | || ||| | || |||| ||||| || |||||||| | |||||||||
Sbjct 40367 GTAGTCAGACAGGGTGCGACCATCTTCCAATTGCTTACCAGCAAAGATAAGACGCTGCTG 40308
Query 44221 ATCTGAAGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTTCCTATGGTGTCGGC 44280
||| | || | || || || || || || || | || | || || || |
Sbjct 40307 ATCAGGTGGGATGCCCTCTTTGTCTTGGATTTTAGCTTTTACATTTTCAATAGTATCAGA 40248
Query 44281 GGATTCCACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337
|| |||||| |||| ||||| |||||||| || ||||| || || || || |||||
Sbjct 40247 GGGTTCCACTTCCAGGGTAATGGTCTTTCCAGTTAGGGTTTTAACAAAAATCTGCAT 40191
Score = 84.2 bits (92), Expect = 2e-11
Identities = 133/191 (70%), Gaps = 0/191 (0%)
Strand=Plus/Minus
Query 44147 TCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAG 44206
|| ||||||||||| || || | || ||| | || || | ||| || || ||||||
Sbjct 41521 TCTTTTTGGATGTTATAGTCCGACAGAGTGCGGCCATCCTCTAACTGTTTACCAGCAAAG 41462
Query 44207 ATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTT 44266
|| | |||||| || |||| || | || ||||| || ||||| ||| | ||
Sbjct 41461 ATGAGACGCTGTTGGTCTGGGGGAATGCCCTCCTTATCTTGGATCTTAGCCTTAACATTT 41402
Query 44267 CCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACG 44326
| || ||||||| | |||||||||| || || ||||| || || || ||||| ||
Sbjct 41401 TCGATAGTGTCGGATGGCTCCACCTCCAAAGTGATGGTCTTCCCAGTAAGAGTCTTAACA 41342
Query 44327 AAGATTTGCAT 44337
||||| |||||
Sbjct 41341 AAGATCTGCAT 41331
>seq1305
Length=286731
Score = 107 bits (118), Expect = 1e-18
Identities = 143/198 (72%), Gaps = 2/198 (1%)
Strand=Plus/Plus
Query 44147 TCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAG 44206
|||||||| |||||||| || | | | || | || || || || || || ||||||
Sbjct 24794 TCCTTTTGAATGTTGTAGTCAGACAATGTACGTCCATCTTCTAGTTGTTTACCAGCAAAG 24853
Query 44207 ATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTT 44266
|||||||| ||||| |||| || | ||||||||| || || || || | ||
Sbjct 24854 ATCAAACGTTGCTGGTCTGGTGGAATACCTTCCTTATCTTGGATTTTAGCTTTTACATTT 24913
Query 44267 CCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACG 44326
|||| || |||| || |||||||| | ||||| || || ||||| |||||||| |||
Sbjct 24914 TCTATAGTATCGGAGGCCTCCACCTCGAGGGTAATGGTTTTACCCGTAAGGGTCTTGACG 24973
Query 44327 AAGATTTGCATGATGTGA 44344
|| |||||||| |||||
Sbjct 24974 AAAATTTGCAT--TGTGA 24989
>seq3424
Length=494560
Score = 89.7 bits (98), Expect = 4e-13
Identities = 160/234 (68%), Gaps = 0/234 (0%)
Strand=Plus/Minus
Query 44104 TTTCATTCCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTA 44163
|| ||| || ||||| || | ||| || | || | || |||||| ||||| || ||
Sbjct 290440 TTGCATGCCACCTCTTAGACGCAAAACTAAATGCAAAGTAGACTCCTTCTGGATATTATA 290381
Query 44164 ATCGGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATC 44223
|| | | | ||| | || ||||| ||||| ||||| || |||| | || |||||
Sbjct 290380 GTCCGACAATGTGCGTCCATCTTCCAGTTGCTTTCCGGCGAAAATCAGTCTTTGTTGATC 290321
Query 44224 TGAAGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGA 44283
|| ||| | |||||||| || ||||| ||| | || |||| || || | |
Sbjct 290320 TGGAGGAATGCCTTCCTTATCTTGAATCTTTGCCTTAACATTTTCTATTGTATCAGAAGC 290261
Query 44284 TTCCACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337
||||||||||| || || || || || || || ||||| || || ||||||||
Sbjct 290260 TTCCACCTCCAAAGTGATAGTTTTCCCAGTCAGTGTCTTTACAAAAATTTGCAT 290207
Score = 87.8 bits (96), Expect = 1e-12
Identities = 162/238 (68%), Gaps = 0/238 (0%)
Strand=Plus/Minus
Query 44104 TTTCATTCCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTA 44163
|| |||||| || || || | || || | ||| | || ||||| ||||| || ||
Sbjct 288844 TTGCATTCCACCCCTTAGACGTAAAACTAAGTGCAAAGTAGATTCCTTCTGGATATTATA 288785
Query 44164 ATCGGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATC 44223
|| | |||| |||| | || |||| ||||| ||||| || || | | || |||||
Sbjct 288784 GTCTGAGAGTGTGCGCCCATCTTCCAATTGCTTTCCGGCGAAAATTAGTCTTTGTTGATC 288725
Query 44224 TGAAGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGA 44283
|| ||| | |||||||| || ||||| ||| | || | || || || | |
Sbjct 288724 TGGAGGGATGCCTTCCTTGTCTTGAATCTTTGCCTTTACGTTTTCGATTGTATCAGAAGC 288665
Query 44284 TTCCACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCATGATG 44341
|||||| |||| || || || || || || | || || ||||||||||||||||||
Sbjct 288664 TTCCACTTCCAATGTGATGGTTTTCCCAGTTAAAGTTTTTACGAAGATTTGCATGATG 288607
Score = 86.0 bits (94), Expect = 5e-12
Identities = 164/238 (69%), Gaps = 3/238 (1%)
Strand=Plus/Minus
Query 44102 TATTT-CATTCCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTT 44160
||||| |||||| |||||||| | | || ||||| | || || || || |||||
Sbjct 289075 TATTTGCATTCCACCTCTCAGCCGTAGTACTAGGTGCAAAGTAGATTCTTTCTGAATGTT 289016
Query 44161 GTAATCGGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTG 44220
|||||| | ||| ||| | || || |||||||| || ||||| || | | |||||
Sbjct 289015 GTAATCAGATAGTGTGCGTCCATCTTCAAGCTGCTTTCCAGCAAAAATAAGTCTTTGCTG 288956
Query 44221 ATCTGAAGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAA-TGTTCCTATGGTGTCGG 44279
||||| || | || || || ||| || ||| |||| || || | || || || |
Sbjct 288955 ATCTGGGGGAATTCCCTCTTTATCCTGAATTTTC-GCTTTAACATTTTCAATTGTATCAG 288897
Query 44280 CGGATTCCACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337
| || || |||| || || ||||| || || || ||||| ||||| ||||||||
Sbjct 288896 AAGGCTCAACTTCCAAAGTGATAGTCTTGCCAGTCAGTGTCTTTACGAAAATTTGCAT 288839
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 359971494766653
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