Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Heliconius_20melpomene_20melpomene_20[genbank_20GCA_5F000313835.2_20
2012-03-01] 4,309 sequences; 273,786,188 total letters
Query= NC_033775.1
Length=376207
Score E
Sequences producing significant alignments: (Bits) Value
seq3424 138 3e-27
seq1305 138 3e-27
seq2787 127 5e-24
seq3388 98.7 2e-15
>seq3424
Length=494560
Score = 138 bits (152), Expect = 3e-27
Identities = 156/209 (75%), Gaps = 0/209 (0%)
Strand=Plus/Plus
Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983
||||| ||||| |||||| | || || ||||| ||||| | || |||||| || ||
Sbjct 288614 CAAATCTTCGTAAAAACTTTAACTGGGAAAACCATCACATTGGAAGTGGAAGCTTCTGAT 288673
Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043
|| ||||| ||||| || ||||||||| ||||| ||||| |||||||| || || |||
Sbjct 288674 ACAATCGAAAACGTAAAGGCAAAGATTCAAGACAAGGAAGGCATCCCTCCAGATCAACAA 288733
Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103
|||| || ||||||||||| || | |||||||| | || || | || ||||| ||
Sbjct 288734 AGACTAATTTTCGCCGGAAAGCAATTGGAAGATGGGCGCACACTCTCAGACTATAATATC 288793
Query 178104 CAAAAAGAATCAACACTGCATCTTGTTTT 178132
|| || ||||| || |||| | |||||
Sbjct 288794 CAGAAGGAATCTACTTTGCACTTAGTTTT 288822
Score = 134 bits (148), Expect = 3e-26
Identities = 161/219 (74%), Gaps = 0/219 (0%)
Strand=Plus/Plus
Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983
|||||||| |||||||| | || || ||||| || ||| | || ||||| || |||
Sbjct 289982 CAAATTTTTGTGAAAACATTGACTGGCAAAACTATTACCTTGGAAGTGGAGGCTTCTGAC 290041
Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043
|| || || || || || ||||||||| ||||| ||||| || ||||| || || |||
Sbjct 290042 ACAATAGAAAATGTTAAGGCAAAGATTCAAGACAAGGAAGGCATTCCTCCAGATCAACAA 290101
Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103
|||| || ||||||||||| || || ||||||||| | || | | || ||||| ||
Sbjct 290102 AGACTGATTTTCGCCGGAAAGCAACTGGAAGATGGACGCACATTGTCGGACTATAATATC 290161
Query 178104 CAAAAAGAATCAACACTGCATCTTGTTTTGAGACTCAGA 178142
|| || || || || ||||| | |||||| | || |||
Sbjct 290162 CAGAAGGAGTCTACTTTGCATTTAGTTTTGCGTCTAAGA 290200
Score = 134 bits (148), Expect = 3e-26
Identities = 161/219 (74%), Gaps = 0/219 (0%)
Strand=Plus/Plus
Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983
|||||||| || || || || || || ||||| ||||| | || |||||| || ||
Sbjct 290438 CAAATTTTTGTAAAGACACTGACTGGGAAAACTATCACTTTGGAAGTGGAAGCTTCTGAT 290497
Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043
|| || || || || || ||||||||| || || ||||| || ||||| || || |||
Sbjct 290498 ACAATAGAAAATGTTAAGGCAAAGATTCAAGATAAGGAAGGCATTCCTCCAGATCAACAA 290557
Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103
|||| || ||||||||||| || || |||||||| | || | | || ||||| ||
Sbjct 290558 AGACTGATTTTCGCCGGAAAGCAACTGGAAGATGGGCGCACATTATCAGACTATAATATC 290617
Query 178104 CAAAAAGAATCAACACTGCATCTTGTTTTGAGACTCAGA 178142
|| |||||||| || || || |||||| | ||||| |||
Sbjct 290618 CAGAAAGAATCTACCCTTCACCTTGTTCTCAGACTTAGA 290656
Score = 129 bits (142), Expect = 1e-24
Identities = 160/219 (73%), Gaps = 0/219 (0%)
Strand=Plus/Plus
Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983
|||||||| || || || || || || ||||| ||||| | ||||||||| || ||
Sbjct 290210 CAAATTTTTGTAAAGACACTGACTGGGAAAACTATCACTTTGGAGGTGGAAGCTTCTGAT 290269
Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043
|| || || || || || ||||||||| || || ||||| || ||||| || || |||
Sbjct 290270 ACAATAGAAAATGTTAAGGCAAAGATTCAAGATAAGGAAGGCATTCCTCCAGATCAACAA 290329
Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103
|||| || ||||||||||| || || ||||||||| | || | | || ||||| ||
Sbjct 290330 AGACTGATTTTCGCCGGAAAGCAACTGGAAGATGGACGCACATTGTCGGACTATAATATC 290389
Query 178104 CAAAAAGAATCAACACTGCATCTTGTTTTGAGACTCAGA 178142
|| || || || || ||||| | |||||| | || |||
Sbjct 290390 CAGAAGGAGTCTACTTTGCATTTAGTTTTGCGTCTAAGA 290428
Score = 123 bits (136), Expect = 6e-23
Identities = 151/206 (73%), Gaps = 0/206 (0%)
Strand=Plus/Plus
Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983
||||||||||| || || || || || || || ||||| | || || || || ||
Sbjct 288842 CAAATTTTCGTAAAGACACTGACTGGCAAGACTATCACTTTGGAAGTTGAGCCTTCTGAT 288901
Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043
|| || || || || ||| || |||||||| ||||| ||||| || || || ||||||
Sbjct 288902 ACAATTGAAAATGTTAAAGCGAAAATTCAGGATAAAGAGGGAATTCCCCCAGATCAGCAA 288961
Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103
||||||| || || ||||| ||||| ||||||||| | || || | ||||| ||| |
Sbjct 288962 AGACTTATTTTTGCTGGAAAGCAGCTTGAAGATGGACGCACACTATCTGATTACAACATT 289021
Query 178104 CAAAAAGAATCAACACTGCATCTTGT 178129
|| |||||||| || |||| || ||
Sbjct 289022 CAGAAAGAATCTACTTTGCACCTAGT 289047
Score = 123 bits (136), Expect = 6e-23
Identities = 151/205 (74%), Gaps = 1/205 (0%)
Strand=Plus/Plus
Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983
||||| || || || || || || || ||||| ||||| | || ||||| || ||
Sbjct 289070 CAAATATTTGTAAAGACACTGACTGGCAAAACTATCACATTGGAAGTGGAGGCTTCTGAT 289129
Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043
|| || || || || || ||| ||||| ||||||||||| || ||||| ||||| ||
Sbjct 289130 ACAATAGAAAATGTTAAGGCAAAAATTCAAGACAAAGAAGGCATTCCTCCTGACCAACAG 289189
Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103
| ||||| || || ||||||||||| ||||||||| | || || | |||||||| |
Sbjct 289190 AGGCTTATTTTTGCAGGAAAACAGCTGGAAGATGGACGTACACTGTCAGATTATAATATT 289249
Query 178104 CAAAAAGAATCAACACTGCATCTTG 178128
||||| ||||| || |||| ||||
Sbjct 289250 CAAAAGGAATCTACTTTGCA-CTTG 289273
>seq1305
Length=286731
Score = 138 bits (152), Expect = 3e-27
Identities = 154/206 (75%), Gaps = 0/206 (0%)
Strand=Plus/Minus
Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983
||||||||||| || || || || || ||||| || |||||||||||||| ||| ||
Sbjct 24981 CAAATTTTCGTCAAGACCCTTACGGGTAAAACCATTACCCTCGAGGTGGAGGCCTCCGAT 24922
Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043
|| || || || || ||| || || || || || ||||| || || || |||||||||
Sbjct 24921 ACTATAGAAAATGTAAAAGCTAAAATCCAAGATAAGGAAGGTATTCCACCAGACCAGCAA 24862
Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103
|| | ||||| || || ||||| || ||||||||| | || | | || || ||| |
Sbjct 24861 CGTTTGATCTTTGCTGGTAAACAACTAGAAGATGGACGTACATTGTCTGACTACAACATT 24802
Query 178104 CAAAAAGAATCAACACTGCATCTTGT 178129
||||| ||||| ||| ||||||||||
Sbjct 24801 CAAAAGGAATCCACATTGCATCTTGT 24776
>seq2787
Length=76071
Score = 127 bits (140), Expect = 5e-24
Identities = 152/205 (74%), Gaps = 1/205 (0%)
Strand=Plus/Plus
Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983
||||| || || ||||| || || |||||||| || || | || || || ||||||
Sbjct 40878 CAAATATTTGTCAAAACACTTACTGGAAAAACAATAACTTTGGAAGTTGAGCCATCAGAC 40937
Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043
||||| || || || ||| |||||||| || || |||||||| ||||| || || |||
Sbjct 40938 ACCATTGAAAATGTTAAAGCTAAGATTCAAGATAAGGAAGGAATTCCTCCAGATCAACAA 40997
Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103
|| ||||||||||| || ||||| || |||||||| | || || | || || || ||
Sbjct 40998 CGTCTTATCTTCGCTGGTAAACAACTGGAAGATGGCCGCACCCTGTCTGACTACAATATC 41057
Query 178104 CAAAAAGAATCAACACTGCATCTTG 178128
|| ||||| || || || || ||||
Sbjct 41058 CAGAAAGAGTCGACCCTTCA-CTTG 41081
Score = 122 bits (134), Expect = 2e-22
Identities = 147/200 (74%), Gaps = 0/200 (0%)
Strand=Plus/Plus
Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983
||||| || || ||||| ||||| |||||||| || || | || || ||| || |||
Sbjct 39966 CAAATCTTTGTTAAAACACTCACTGGAAAAACAATTACTTTAGAAGTTGAAGCTTCTGAC 40025
Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043
|| || || || || ||| || || || ||||||||||| || |||||||| || |||
Sbjct 40026 ACAATTGAAAATGTGAAAGCTAAAATCCAAGACAAAGAAGGCATTCCTCCGGATCAACAA 40085
Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103
|| ||||| || || || || || | |||||||| | || || | || || ||| ||
Sbjct 40086 CGTCTTATTTTTGCGGGCAAGCAATTAGAAGATGGTCGTACACTGTCTGACTACAACATC 40145
Query 178104 CAAAAAGAATCAACACTGCA 178123
||||||||||| || ||||
Sbjct 40146 CAAAAAGAATCTACTTTGCA 40165
Score = 118 bits (130), Expect = 3e-21
Identities = 152/210 (72%), Gaps = 0/210 (0%)
Strand=Plus/Plus
Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983
|| || || || || ||||| ||||||||||| ||||| | ||||| || || |||
Sbjct 39738 CAGATCTTTGTTAAGACTCTTACAGGAAAAACCATCACTTTAGAGGTAGAGCCGTCCGAC 39797
Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043
|| ||||| || || || |||||| || |||||||| || || || || || || ||
Sbjct 39798 ACTATCGAAAATGTGAAGGCAAAGATCCAAGACAAAGAGGGTATTCCCCCAGATCAACAG 39857
Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103
| ||||| || || |||||||| || |||||||| | || | | |||||||| |
Sbjct 39858 AGGCTTATTTTTGCTGGAAAACAACTAGAAGATGGCCGTACATTATCTGATTATAATATT 39917
Query 178104 CAAAAAGAATCAACACTGCATCTTGTTTTG 178133
||||| ||||| || || ||| | || |||
Sbjct 39918 CAAAAGGAATCTACCCTACATTTAGTATTG 39947
Score = 111 bits (122), Expect = 4e-19
Identities = 154/214 (72%), Gaps = 4/214 (2%)
Strand=Plus/Plus
Query 177915 AAAATGCTCCAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAA 177974
||||||| | || || |||||||| || || || ||||| || || | || || |||
Sbjct 39504 AAAATGC---AGATCTTTGTGAAAACACTTACGGGTAAAACCATTACTTTGGAAGTTGAA 39560
Query 177975 AGCTCAGACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCG 178034
|| || || || || || || ||| || ||||| ||||| ||||| || |||||
Sbjct 39561 CCTTCCGATACTATTGAAAATGTAAAAGCCAAAATTCAAGACAAGGAAGGCATTCCTCCA 39620
Query 178035 GACCAGCAACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGAT 178094
|| || ||||| | || ||||| ||||| || | ||||| ||| | |||||| | ||
Sbjct 39621 GATCAACAACGTTTGATTTTCGCTGGAAAGCAATTGGAAGACGGACGCACTCTTTCTGAC 39680
Query 178095 TATAACGTCCAAAAAGAATCAACACTGCATCTTG 178128
||||| | ||||||||||| || || || ||||
Sbjct 39681 TATAATATTCAAAAAGAATCTACTCTTCA-CTTG 39713
Score = 111 bits (122), Expect = 4e-19
Identities = 145/201 (72%), Gaps = 0/201 (0%)
Strand=Plus/Plus
Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983
|| || || || || ||||| || || || || ||||| | |||||||| || |||
Sbjct 41334 CAGATCTTTGTTAAGACTCTTACTGGGAAGACCATCACTTTGGAGGTGGAGCCATCCGAC 41393
Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043
|| ||||| || || || ||||| || || || || || || || || ||||| ||
Sbjct 41394 ACTATCGAAAATGTTAAGGCTAAGATCCAAGATAAGGAGGGCATTCCCCCAGACCAACAG 41453
Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103
|| || ||||| || || |||||| | || ||||| | ||||| | || |||||| ||
Sbjct 41454 CGTCTCATCTTTGCTGGTAAACAGTTAGAGGATGGCCGCACTCTGTCGGACTATAACATC 41513
Query 178104 CAAAAAGAATCAACACTGCAT 178124
||||||||||| || |||||
Sbjct 41514 CAAAAAGAATCTACTTTGCAT 41534
>seq3388
Length=400618
Score = 98.7 bits (108), Expect = 2e-15
Identities = 93/119 (78%), Gaps = 0/119 (0%)
Strand=Plus/Plus
Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983
|| |||||||||||||| || || || || || |||||||| ||||| || ||| |||
Sbjct 242952 CAGATTTTCGTGAAAACCCTAACGGGTAAGACCATCACCCTTGAGGTCGAGCCCTCGGAC 243011
Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCA 178042
|| |||||||| || || ||||| || |||||||| ||||| || || ||||||||
Sbjct 243012 ACTATCGAGAATGTAAAGGCCAAGATCCAAGACAAAGAGGGAATTCCCCCAGACCAGCA 243070
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1203664743128946
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