Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Heliconius_20melpomene_20melpomene_20[genbank_20GCA_5F000313835.2_20 2012-03-01] 4,309 sequences; 273,786,188 total letters Query= NC_033775.1 Length=376207 Score E Sequences producing significant alignments: (Bits) Value seq3424 138 3e-27 seq1305 138 3e-27 seq2787 127 5e-24 seq3388 98.7 2e-15 >seq3424 Length=494560 Score = 138 bits (152), Expect = 3e-27 Identities = 156/209 (75%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 ||||| ||||| |||||| | || || ||||| ||||| | || |||||| || || Sbjct 288614 CAAATCTTCGTAAAAACTTTAACTGGGAAAACCATCACATTGGAAGTGGAAGCTTCTGAT 288673 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || ||||| ||||| || ||||||||| ||||| ||||| |||||||| || || ||| Sbjct 288674 ACAATCGAAAACGTAAAGGCAAAGATTCAAGACAAGGAAGGCATCCCTCCAGATCAACAA 288733 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 |||| || ||||||||||| || | |||||||| | || || | || ||||| || Sbjct 288734 AGACTAATTTTCGCCGGAAAGCAATTGGAAGATGGGCGCACACTCTCAGACTATAATATC 288793 Query 178104 CAAAAAGAATCAACACTGCATCTTGTTTT 178132 || || ||||| || |||| | ||||| Sbjct 288794 CAGAAGGAATCTACTTTGCACTTAGTTTT 288822 Score = 134 bits (148), Expect = 3e-26 Identities = 161/219 (74%), Gaps = 0/219 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 |||||||| |||||||| | || || ||||| || ||| | || ||||| || ||| Sbjct 289982 CAAATTTTTGTGAAAACATTGACTGGCAAAACTATTACCTTGGAAGTGGAGGCTTCTGAC 290041 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || || || || || || ||||||||| ||||| ||||| || ||||| || || ||| Sbjct 290042 ACAATAGAAAATGTTAAGGCAAAGATTCAAGACAAGGAAGGCATTCCTCCAGATCAACAA 290101 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 |||| || ||||||||||| || || ||||||||| | || | | || ||||| || Sbjct 290102 AGACTGATTTTCGCCGGAAAGCAACTGGAAGATGGACGCACATTGTCGGACTATAATATC 290161 Query 178104 CAAAAAGAATCAACACTGCATCTTGTTTTGAGACTCAGA 178142 || || || || || ||||| | |||||| | || ||| Sbjct 290162 CAGAAGGAGTCTACTTTGCATTTAGTTTTGCGTCTAAGA 290200 Score = 134 bits (148), Expect = 3e-26 Identities = 161/219 (74%), Gaps = 0/219 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 |||||||| || || || || || || ||||| ||||| | || |||||| || || Sbjct 290438 CAAATTTTTGTAAAGACACTGACTGGGAAAACTATCACTTTGGAAGTGGAAGCTTCTGAT 290497 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || || || || || || ||||||||| || || ||||| || ||||| || || ||| Sbjct 290498 ACAATAGAAAATGTTAAGGCAAAGATTCAAGATAAGGAAGGCATTCCTCCAGATCAACAA 290557 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 |||| || ||||||||||| || || |||||||| | || | | || ||||| || Sbjct 290558 AGACTGATTTTCGCCGGAAAGCAACTGGAAGATGGGCGCACATTATCAGACTATAATATC 290617 Query 178104 CAAAAAGAATCAACACTGCATCTTGTTTTGAGACTCAGA 178142 || |||||||| || || || |||||| | ||||| ||| Sbjct 290618 CAGAAAGAATCTACCCTTCACCTTGTTCTCAGACTTAGA 290656 Score = 129 bits (142), Expect = 1e-24 Identities = 160/219 (73%), Gaps = 0/219 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 |||||||| || || || || || || ||||| ||||| | ||||||||| || || Sbjct 290210 CAAATTTTTGTAAAGACACTGACTGGGAAAACTATCACTTTGGAGGTGGAAGCTTCTGAT 290269 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || || || || || || ||||||||| || || ||||| || ||||| || || ||| Sbjct 290270 ACAATAGAAAATGTTAAGGCAAAGATTCAAGATAAGGAAGGCATTCCTCCAGATCAACAA 290329 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 |||| || ||||||||||| || || ||||||||| | || | | || ||||| || Sbjct 290330 AGACTGATTTTCGCCGGAAAGCAACTGGAAGATGGACGCACATTGTCGGACTATAATATC 290389 Query 178104 CAAAAAGAATCAACACTGCATCTTGTTTTGAGACTCAGA 178142 || || || || || ||||| | |||||| | || ||| Sbjct 290390 CAGAAGGAGTCTACTTTGCATTTAGTTTTGCGTCTAAGA 290428 Score = 123 bits (136), Expect = 6e-23 Identities = 151/206 (73%), Gaps = 0/206 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 ||||||||||| || || || || || || || ||||| | || || || || || Sbjct 288842 CAAATTTTCGTAAAGACACTGACTGGCAAGACTATCACTTTGGAAGTTGAGCCTTCTGAT 288901 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || || || || || ||| || |||||||| ||||| ||||| || || || |||||| Sbjct 288902 ACAATTGAAAATGTTAAAGCGAAAATTCAGGATAAAGAGGGAATTCCCCCAGATCAGCAA 288961 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 ||||||| || || ||||| ||||| ||||||||| | || || | ||||| ||| | Sbjct 288962 AGACTTATTTTTGCTGGAAAGCAGCTTGAAGATGGACGCACACTATCTGATTACAACATT 289021 Query 178104 CAAAAAGAATCAACACTGCATCTTGT 178129 || |||||||| || |||| || || Sbjct 289022 CAGAAAGAATCTACTTTGCACCTAGT 289047 Score = 123 bits (136), Expect = 6e-23 Identities = 151/205 (74%), Gaps = 1/205 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 ||||| || || || || || || || ||||| ||||| | || ||||| || || Sbjct 289070 CAAATATTTGTAAAGACACTGACTGGCAAAACTATCACATTGGAAGTGGAGGCTTCTGAT 289129 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || || || || || || ||| ||||| ||||||||||| || ||||| ||||| || Sbjct 289130 ACAATAGAAAATGTTAAGGCAAAAATTCAAGACAAAGAAGGCATTCCTCCTGACCAACAG 289189 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 | ||||| || || ||||||||||| ||||||||| | || || | |||||||| | Sbjct 289190 AGGCTTATTTTTGCAGGAAAACAGCTGGAAGATGGACGTACACTGTCAGATTATAATATT 289249 Query 178104 CAAAAAGAATCAACACTGCATCTTG 178128 ||||| ||||| || |||| |||| Sbjct 289250 CAAAAGGAATCTACTTTGCA-CTTG 289273 >seq1305 Length=286731 Score = 138 bits (152), Expect = 3e-27 Identities = 154/206 (75%), Gaps = 0/206 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 ||||||||||| || || || || || ||||| || |||||||||||||| ||| || Sbjct 24981 CAAATTTTCGTCAAGACCCTTACGGGTAAAACCATTACCCTCGAGGTGGAGGCCTCCGAT 24922 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || || || || || ||| || || || || || ||||| || || || ||||||||| Sbjct 24921 ACTATAGAAAATGTAAAAGCTAAAATCCAAGATAAGGAAGGTATTCCACCAGACCAGCAA 24862 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || | ||||| || || ||||| || ||||||||| | || | | || || ||| | Sbjct 24861 CGTTTGATCTTTGCTGGTAAACAACTAGAAGATGGACGTACATTGTCTGACTACAACATT 24802 Query 178104 CAAAAAGAATCAACACTGCATCTTGT 178129 ||||| ||||| ||| |||||||||| Sbjct 24801 CAAAAGGAATCCACATTGCATCTTGT 24776 >seq2787 Length=76071 Score = 127 bits (140), Expect = 5e-24 Identities = 152/205 (74%), Gaps = 1/205 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 ||||| || || ||||| || || |||||||| || || | || || || |||||| Sbjct 40878 CAAATATTTGTCAAAACACTTACTGGAAAAACAATAACTTTGGAAGTTGAGCCATCAGAC 40937 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 ||||| || || || ||| |||||||| || || |||||||| ||||| || || ||| Sbjct 40938 ACCATTGAAAATGTTAAAGCTAAGATTCAAGATAAGGAAGGAATTCCTCCAGATCAACAA 40997 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || ||||||||||| || ||||| || |||||||| | || || | || || || || Sbjct 40998 CGTCTTATCTTCGCTGGTAAACAACTGGAAGATGGCCGCACCCTGTCTGACTACAATATC 41057 Query 178104 CAAAAAGAATCAACACTGCATCTTG 178128 || ||||| || || || || |||| Sbjct 41058 CAGAAAGAGTCGACCCTTCA-CTTG 41081 Score = 122 bits (134), Expect = 2e-22 Identities = 147/200 (74%), Gaps = 0/200 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 ||||| || || ||||| ||||| |||||||| || || | || || ||| || ||| Sbjct 39966 CAAATCTTTGTTAAAACACTCACTGGAAAAACAATTACTTTAGAAGTTGAAGCTTCTGAC 40025 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || || || || || ||| || || || ||||||||||| || |||||||| || ||| Sbjct 40026 ACAATTGAAAATGTGAAAGCTAAAATCCAAGACAAAGAAGGCATTCCTCCGGATCAACAA 40085 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || ||||| || || || || || | |||||||| | || || | || || ||| || Sbjct 40086 CGTCTTATTTTTGCGGGCAAGCAATTAGAAGATGGTCGTACACTGTCTGACTACAACATC 40145 Query 178104 CAAAAAGAATCAACACTGCA 178123 ||||||||||| || |||| Sbjct 40146 CAAAAAGAATCTACTTTGCA 40165 Score = 118 bits (130), Expect = 3e-21 Identities = 152/210 (72%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || || || || ||||| ||||||||||| ||||| | ||||| || || ||| Sbjct 39738 CAGATCTTTGTTAAGACTCTTACAGGAAAAACCATCACTTTAGAGGTAGAGCCGTCCGAC 39797 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || ||||| || || || |||||| || |||||||| || || || || || || || Sbjct 39798 ACTATCGAAAATGTGAAGGCAAAGATCCAAGACAAAGAGGGTATTCCCCCAGATCAACAG 39857 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 | ||||| || || |||||||| || |||||||| | || | | |||||||| | Sbjct 39858 AGGCTTATTTTTGCTGGAAAACAACTAGAAGATGGCCGTACATTATCTGATTATAATATT 39917 Query 178104 CAAAAAGAATCAACACTGCATCTTGTTTTG 178133 ||||| ||||| || || ||| | || ||| Sbjct 39918 CAAAAGGAATCTACCCTACATTTAGTATTG 39947 Score = 111 bits (122), Expect = 4e-19 Identities = 154/214 (72%), Gaps = 4/214 (2%) Strand=Plus/Plus Query 177915 AAAATGCTCCAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAA 177974 ||||||| | || || |||||||| || || || ||||| || || | || || ||| Sbjct 39504 AAAATGC---AGATCTTTGTGAAAACACTTACGGGTAAAACCATTACTTTGGAAGTTGAA 39560 Query 177975 AGCTCAGACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCG 178034 || || || || || || || ||| || ||||| ||||| ||||| || ||||| Sbjct 39561 CCTTCCGATACTATTGAAAATGTAAAAGCCAAAATTCAAGACAAGGAAGGCATTCCTCCA 39620 Query 178035 GACCAGCAACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGAT 178094 || || ||||| | || ||||| ||||| || | ||||| ||| | |||||| | || Sbjct 39621 GATCAACAACGTTTGATTTTCGCTGGAAAGCAATTGGAAGACGGACGCACTCTTTCTGAC 39680 Query 178095 TATAACGTCCAAAAAGAATCAACACTGCATCTTG 178128 ||||| | ||||||||||| || || || |||| Sbjct 39681 TATAATATTCAAAAAGAATCTACTCTTCA-CTTG 39713 Score = 111 bits (122), Expect = 4e-19 Identities = 145/201 (72%), Gaps = 0/201 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || || || || ||||| || || || || ||||| | |||||||| || ||| Sbjct 41334 CAGATCTTTGTTAAGACTCTTACTGGGAAGACCATCACTTTGGAGGTGGAGCCATCCGAC 41393 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || ||||| || || || ||||| || || || || || || || || ||||| || Sbjct 41394 ACTATCGAAAATGTTAAGGCTAAGATCCAAGATAAGGAGGGCATTCCCCCAGACCAACAG 41453 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || || ||||| || || |||||| | || ||||| | ||||| | || |||||| || Sbjct 41454 CGTCTCATCTTTGCTGGTAAACAGTTAGAGGATGGCCGCACTCTGTCGGACTATAACATC 41513 Query 178104 CAAAAAGAATCAACACTGCAT 178124 ||||||||||| || ||||| Sbjct 41514 CAAAAAGAATCTACTTTGCAT 41534 >seq3388 Length=400618 Score = 98.7 bits (108), Expect = 2e-15 Identities = 93/119 (78%), Gaps = 0/119 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || |||||||||||||| || || || || || |||||||| ||||| || ||| ||| Sbjct 242952 CAGATTTTCGTGAAAACCCTAACGGGTAAGACCATCACCCTTGAGGTCGAGCCCTCGGAC 243011 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCA 178042 || |||||||| || || ||||| || |||||||| ||||| || || |||||||| Sbjct 243012 ACTATCGAGAATGTAAAGGCCAAGATCCAAGACAAAGAGGGAATTCCCCCAGACCAGCA 243070 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1203664743128946