Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Heliconius_20pachinus_20[genbank_20GCA_5F900068735.1_202017-04-26]
277,083 sequences; 279,264,790 total letters
Query= NC_001611.1
Length=185578
Score E
Sequences producing significant alignments: (Bits) Value
seq13366 535 5e-147
seq7533 89.7 6e-13
seq56708 84.2 3e-11
>seq13366
Length=6323
Score = 535 bits (592), Expect = 5e-147
Identities = 1109/1625 (68%), Gaps = 47/1625 (3%)
Strand=Plus/Plus
Query 52788 TTATTTTATCCTTGTCCAATGTGAATTGAATGGGAGCGGATGCGGGTTTCGTACGTAGAT 52847
|||||||| | ||||| | || || ||||| | | | ||| ||||| || |||| |
Sbjct 494 TTATTTTACCTTTGTCTACAGTAAACTGAATAGCATTTGCTGCTGGTTTTGTGCGTAAGT 553
Query 52848 AGTACATTCCCGTTTTTAGACCGAGACTCCATCCGTAAAAATGCATACTTGTTAGTTTGG 52907
|||||||||| ||||||| || | |||| ||| ||||| || || |||||
Sbjct 554 AGTACATTCCTGTTTTTAATCCCATTTTCCAAGCGTGGAAATGAATCGACGTAAGTTTTC 613
Query 52908 AATAACTCGGATCTGCTATATGGATATTCATAGATTGACTTTGATCGATGAAGGCTCCCC 52967
||| | || | || | ||| || || | |||||||||||| || || || ||||| |
Sbjct 614 CATAGTTAGGTTTAGCAACATGTATGTTAAAAGATTGACTTTGGTCTATAAAAGCTCCTC 673
Query 52968 TGTCTGCAGCCATTTTTATGATCGTCTTTTGTGGAATTTCCCAAATAGTTTTATA-AACT 53026
| || || ||||| | |||| || || ||| ||| ||||| | ||||| || || |
Sbjct 674 TATCAGCTGCCATCTGTATGGATGTTTTCAGTGAAATCTCCCATACGGTTTTGTACAAAT 733
Query 53027 CGCTTAATATCTTCTGGAAGGTTTGTA--TTCT-GAATAGATCCACCATCTACCATAATC 53083
| |||| | |||| |||| ||| | |||| | ||||||||| | |||||
Sbjct 734 CTCTTATT-TCTTTAGGAATTTTTTCAATTTCTTGTATAGATCCATTGTTGTATATAATA 792
Query 53084 CTATTCTTGATCTCATCATTCCATAATTTTCTCTCGGTTAAAACTCTAAGGAGATGCGGA 53143
||| || || || |||| ||| || | | || ||| | | || ||||| |
Sbjct 793 AGATTTTTCATATCTTCATCCCACAAATCAGCCCGAGTCAAATCAGTCAGAAGATGATGG 852
Query 53144 TTAACTACTTGAAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGT 53203
|| ||||| ||||||||||||| || ||||| | ||||||||| ||| | |||
Sbjct 853 TTCACTACAGGAAATTCTCCAGATAAGACTCTTCTTTGGTAAATATTTGATGTAAAGGGT 912
Query 53204 TCCACAGACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACC 53263
|| | ||| ||| | || || | |||||| ||||| || |||||||||||||| || | |
Sbjct 913 TCAAAAGATTCAGTGTTGCCAAGAATTTGTGCAGTAGAGGCAGTCGGCATAGGAGCTATC 972
Query 53264 AATAAACTATTTCTAAGACCGTATGTTCTG--ATTTTATCTTTTAGAGGTTCCCAATTCC 53321
|||| | ||| | | ||| ||||| || || || ||||| || |||| | ||
Sbjct 973 AATAGAGAATTGCGCAAACC--ATGTTTTGCTATCTTTTCTTTAAGGACAGCCCAGTCCC 1030
Query 53322 AAAGATCCGACGGTACAACNNNNNNNNNNNNNNNTTGTAGAATACCGTTACTGGC-GTAC 53380
|||| || | || || || ||||| | || || | ||
Sbjct 1031 AAAGGTCTGTAGGAGTTTTGTCCCACATATCATACTGGAGGATACCTTGGCTTGCTGGAC 1090
Query 53381 GATCCTACATATGTATCGTATGGTCCTTCCTTCTCAGCTAGTTCACAACTCGCCTCTAAT 53440
||| |||||| ||||| ||||| || ||||||| ||||||||| || ||||||
Sbjct 1091 TC-CCTTGATATGTGCTGTATGCACCTTCTTTTTCAGCTAATTCACAACTAGCTTCTAAT 1149
Query 53441 GCACCGTAATAAATGGTTTCGAAGATCTTCTTATTTAGATCTTGTGCTTCCAGGCTATCA 53500
||||| |||||||| ||||| || || | | ||| ||| | ||||| | || ||
Sbjct 1150 GCACCATAATAAATTGTTTCAAATATTTGTTGATTGAGAAGTATTGCTTTCTCACTTTCG 1209
Query 53501 AATGGATAATTTAAGAGA-ATAAACGCGTCTGCTAATCCTTGAACACCAATACCGATAGG 53559
| | ||| | | | | | |||||| ||||| | || |||||||||||||| |||||
Sbjct 1210 TAAG-ATATTCTCATCAACACAAACGCATCTGCCATGCCCTGAACACCAATACCAATAGG 1268
Query 53560 TCTATGTCTCTTATTAGAGATTTCAGCTTCTGGAATAGGATAATAATTAATATCTATAAT 53619
|||||||||| |||| || ||| || || || | ||||||| |||||| ||| ||||
Sbjct 1269 TCTATGTCTCATATTTGAAGTTTTTGCCTCAGGGACAGGATAAAAATTAACATCAATAAC 1328
Query 53620 TTTATTGAGGTTTC---TGACAATTACTTTGACCACATCCTTCAGTTTGAGAAAATCAAA 53676
||| || | ||| | ||||| ||||| | || || | ||| ||||| |||
Sbjct 1329 TTTGTTTAAATTTTGAGTTACAAT--CTTTGTG-ATTTCTTTTAATTTTTTAAAATTAAA 1385
Query 53677 T-TGTCCATCTATTACAAACATGTTCAATGCAATAGATGCCAGATTACAAACGGCTACCT 53735
| ||| || | ||||||||||| | ||| || || || || || || || || || |
Sbjct 1386 TCTGTT-ATTTTCAACAAACATGTTAAGTGCTATGGAAGCAAGGTTGCACACTGCCACTT 1444
Query 53736 CATTAGCATCCGCA---TATTGTATTATCTCAGTGCAAAGATTACTACACTTGATGGTTC 53792
||| | || | | ||||| | | ||||||||||||||| ||||| || || || |
Sbjct 1445 CAT---CTTCTGAAGTGTATTGCACAACCTCAGTGCAAAGATTGCTACATTTAATAGTGC 1501
Query 53793 CTAAATTTTGTTGATTACTCTTTTTGTTACACGCATCCTTATAAAGAATGAATGGCGTAC 53852
| | ||||| ||||||||||||| ||||||| ||||||||||| | ||| |||| ||||
Sbjct 1502 CAAGATTTTTTTGATTACTCTTTCTGTTACAAGCATCCTTATACAACATGTATGGTGTAC 1561
Query 53853 CAGTTTCAATCTGGGATTCTATAATCGCTTTCCAGACGACACGAGCCTTTATTATAGATT 53912
|||| || | |||| ||||||||| | ||||| | | |||| | | | | ||
Sbjct 1562 CAGTCTCCACTTGGGCTTCTATAATTGACTTCCATAACTCTTGAGCTCTGACTT--GTTT 1619
Query 53913 TGTATCTCTTTTCTCTT--TCGTATAGTGTATACAATCGTTCAAACTCGTCTCCCCAAAC 53970
| || || ||| |||| || ||| | ||| | | |||||| || ||||| || |
Sbjct 1620 TATAAATCGTTTTTCTTCTTCATATTTGGCATATAGTTCTTCAAATTCCTCTCCA-AAGC 1678
Query 53971 ATTGTCCAAT-CCAGGACATTCATCCGGACACATCAACGACCACTCTCCGTCATCCTTC- 54028
| | | | |||||||| |||| |||||||| | ||| || ||||||||
Sbjct 1679 AGTCAGCGAGGCCAGGACAATCATGAGGACACATGAGACTCCAAACT---TCATCCTTTT 1735
Query 54029 --ACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTAT 54086
|||| ||||||||| ||||| || ||||| | ||| ||| || ||||| | |||
Sbjct 1736 CTACTCTTTTCATAAACAGATCTGGTATCCATAAAGCATAAAACAGTTCTCTAGCTCTCA 1795
Query 54087 GTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACG 54146
||| || || ||||| ||||| || | ||| | ||| | | ||||| | |||||| |
Sbjct 1796 TTTCTTCCTTACCTGTGTTCTTCTTTAAATCCAAGAATTCAAATATATCCGCATGCCAAG 1855
Query 54147 GTTCCAAGTATATGGTCATAACTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAG 54206
| || || || || | | | || || ||||||||||| || ||||||| ||||| |
Sbjct 1856 GCTCTAAATAAATTGCAAATGCGCCGGGACGTTTGTTTCCACCTTGATCTACATATCTGG 1915
Query 54207 CGGTGTTATTATAAACTCTCAACATTGGAATAATACCATTGGATGCACCATTGGTCCCGG 54266
| || || ||||| |||||||||||||| | | |||||| || | ||||| || || |
Sbjct 1916 CAGTATTGTTATACACTCTCAACATTGGCACTAGACCATTTGAGACCCCATTAGTGCCAG 1975
Query 54267 AGATATAGCTTCCACTG-GCACGAAT---ATTACTAATTGATAGACCTATCCCCCCTGCC 54322
|| || || ||| || | || || || || || |||||| || || ||
Sbjct 1976 CTATGTAAGAACC-CTGAGCTCTGATGCAATGTGTA--TG-TAAACCTATGCCACCAGCA 2031
Query 54323 ATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGATGCCCTCTATACTATCATCC 54382
|||||| |||||||| ||| ||||||| |||||| | || || || || ||||| ||
Sbjct 2032 GATTTAGAAATTAATGCACATTGTTTTAAAGTATCAAAAATACCTTCAATGCTATCGTCT 2091
Query 54383 ATCAT 54387
||||
Sbjct 2092 TTCAT 2096
Score = 96.9 bits (106), Expect = 4e-15
Identities = 88/111 (79%), Gaps = 0/111 (0%)
Strand=Plus/Plus
Query 54568 CTTGTTGTTTATTTTCAGCAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTA 54627
||| |||||||| |||| ||| || ||| ||||||||||||| |||||||||||||||||
Sbjct 2609 CTTATTGTTTATCTTCAACAAATATGATCTTTCCAAAGTTTTGAAACCAAAATAGTTGTA 2668
Query 54628 TGAAAAGTCTCGTTCGTAAATAATAACTGAGTTGAGTTTATCCTTATATTT 54678
| ||| |||| || |||| ||| | |||| | ||| ||||| | |||
Sbjct 2669 TTTAAAATCTCTATCATAAACAATGGCAGAGTCTAATTTGTCCTTGTTTTT 2719
Score = 95.1 bits (104), Expect = 1e-14
Identities = 105/140 (75%), Gaps = 0/140 (0%)
Strand=Plus/Plus
Query 54779 TTTTTTGTTTCTTTGTGTAGATTTGATACGGCTATTCTAGCGGCTAGAATGGCATAATCC 54838
|| || || ||||| |||| ||| |||| |||||||| || || | |||||||||||||
Sbjct 3380 TTCTTGGTGTCTTTATGTAAATTGGATATTGCTATTCTGGCAGCCAAAATGGCATAATCC 3439
Query 54839 GGATGTTGTGTAGTACAAGTGGCTGCTATTTCGGCTGTCAGAGTGTCCAATTCTACCGTT 54898
||||| | ||| || ||| ||||||||||| || | ||| | || | || | |||
Sbjct 3440 GGATGATCTGTGGTCTTAGTAGCTGCTATTTCTGCAGCTAGATTATCAAGCTCAGCAGTT 3499
Query 54899 GTTACTCCATTATATATTCC 54918
||||| ||| |||||| ||
Sbjct 3500 GTTACACCAGAATATATGCC 3519
>seq7533
Length=2710
Score = 89.7 bits (98), Expect = 6e-13
Identities = 85/109 (78%), Gaps = 0/109 (0%)
Strand=Plus/Minus
Query 24621 TTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATACATATTC 24680
||||||| || |||||||| | |||||||| ||||| || || ||||||||||| | |
Sbjct 680 TTAGATAAGTCTACTTCTTCTGCAGTCCAAAACGATGCTTCAGCTTTTTTATACATCTGC 621
Query 24681 CAGATGTCATGATATTGAATTGGAAAAATAACAAATCTATTTGGATTTT 24729
|| || || ||||||| ||||| || |||||||| | | |||||||
Sbjct 620 CATATATCTGGATATTGGATTGGGAATATAACAAAACGTCTAGGATTTT 572
>seq56708
Length=5257
Score = 84.2 bits (92), Expect = 3e-11
Identities = 244/372 (66%), Gaps = 13/372 (3%)
Strand=Plus/Plus
Query 147329 TTATGACTCCA--ATTAATCCCATGTTAGCGGAATCGTGTGATTCTGTCAATAAGGCATT 147386
||||||||||| |||| || |||||||| ||| | || | || || | | ||| |
Sbjct 2030 TTATGACTCCAGTATTA--CCGATGTTAGCAGAAGCTTGCAAGTCAGTTGAAATGGCTAT 2087
Query 147387 TAAAAAATTTCCATCAGGAATGTTTGCTGAAGTCAAATACGATGGCGAGAGAGTACAAGT 147446
||||||| |||| || |||||| |||| | ||||| ||||| || | || |||||
Sbjct 2088 GAAAAAATGTCCAAATGGCATGTTTTCTGAGATAAAATATGATGGAGAACGGGTTCAAGT 2147
Query 147447 TCATAAAAATAATAACGAGTTTGCCTTTTTTAGTAGAAACATGAAACCAGTACTCTCTTA 147506
|||||||| || ||||| | |||| | | | ||||||||| | || |
Sbjct 2148 CCATAAAAAGGGAAATGAGTTCAAATATTTTTCCCGTGCCTTAAAACCAGTAATGGCTCA 2207
Query 147507 TAAAGTGGATTATCTCAAAGAATACATACCGAAAGCATT---TAAAAAAGCTACGTCTAT 147563
||||| | || | ||||| || |||| |||||||| |||| || | | ||
Sbjct 2208 CAAAGTTAGTCATTTTAAAGATTATTTACCCAAAGCATTTCCTAAAGGAGATGATTTGAT 2267
Query 147564 CGTATTGGATTCTGAAATTGTTCTTGTAGACGAACATAATGTACAGC---TCCCGTTTGG 147620
| |||||| ||||| | || | || || | ||| || | | | | || || ||
Sbjct 2268 C---TTGGATGCTGAAGTACTTATGGTTGATGTCAATACTGGAAAACCATTGCCTTTCGG 2324
Query 147621 AAGTTTAGGTATACACAAAAAGAAAGAATATAAAAACTCTAACATGTGTTTGTTTGTGTT 147680
| |||||||| |||||| | ||||| |||| | || | | || || | | | ||
Sbjct 2325 TACATTAGGTATTCACAAACAATCAGAATTTAAAGATGCTCAAGTTTGCTTATATATATT 2384
Query 147681 TGACTGTTTGTA 147692
||| || || ||
Sbjct 2385 TGATTGCTTATA 2396
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 591665222973840
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |