Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Heliconius_20pachinus_20[genbank_20GCA_5F900068735.1_202017-04-26] 277,083 sequences; 279,264,790 total letters Query= NC_001611.1 Length=185578 Score E Sequences producing significant alignments: (Bits) Value seq13366 535 5e-147 seq7533 89.7 6e-13 seq56708 84.2 3e-11 >seq13366 Length=6323 Score = 535 bits (592), Expect = 5e-147 Identities = 1109/1625 (68%), Gaps = 47/1625 (3%) Strand=Plus/Plus Query 52788 TTATTTTATCCTTGTCCAATGTGAATTGAATGGGAGCGGATGCGGGTTTCGTACGTAGAT 52847 |||||||| | ||||| | || || ||||| | | | ||| ||||| || |||| | Sbjct 494 TTATTTTACCTTTGTCTACAGTAAACTGAATAGCATTTGCTGCTGGTTTTGTGCGTAAGT 553 Query 52848 AGTACATTCCCGTTTTTAGACCGAGACTCCATCCGTAAAAATGCATACTTGTTAGTTTGG 52907 |||||||||| ||||||| || | |||| ||| ||||| || || ||||| Sbjct 554 AGTACATTCCTGTTTTTAATCCCATTTTCCAAGCGTGGAAATGAATCGACGTAAGTTTTC 613 Query 52908 AATAACTCGGATCTGCTATATGGATATTCATAGATTGACTTTGATCGATGAAGGCTCCCC 52967 ||| | || | || | ||| || || | |||||||||||| || || || ||||| | Sbjct 614 CATAGTTAGGTTTAGCAACATGTATGTTAAAAGATTGACTTTGGTCTATAAAAGCTCCTC 673 Query 52968 TGTCTGCAGCCATTTTTATGATCGTCTTTTGTGGAATTTCCCAAATAGTTTTATA-AACT 53026 | || || ||||| | |||| || || ||| ||| ||||| | ||||| || || | Sbjct 674 TATCAGCTGCCATCTGTATGGATGTTTTCAGTGAAATCTCCCATACGGTTTTGTACAAAT 733 Query 53027 CGCTTAATATCTTCTGGAAGGTTTGTA--TTCT-GAATAGATCCACCATCTACCATAATC 53083 | |||| | |||| |||| ||| | |||| | ||||||||| | ||||| Sbjct 734 CTCTTATT-TCTTTAGGAATTTTTTCAATTTCTTGTATAGATCCATTGTTGTATATAATA 792 Query 53084 CTATTCTTGATCTCATCATTCCATAATTTTCTCTCGGTTAAAACTCTAAGGAGATGCGGA 53143 ||| || || || |||| ||| || | | || ||| | | || ||||| | Sbjct 793 AGATTTTTCATATCTTCATCCCACAAATCAGCCCGAGTCAAATCAGTCAGAAGATGATGG 852 Query 53144 TTAACTACTTGAAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGT 53203 || ||||| ||||||||||||| || ||||| | ||||||||| ||| | ||| Sbjct 853 TTCACTACAGGAAATTCTCCAGATAAGACTCTTCTTTGGTAAATATTTGATGTAAAGGGT 912 Query 53204 TCCACAGACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACC 53263 || | ||| ||| | || || | |||||| ||||| || |||||||||||||| || | | Sbjct 913 TCAAAAGATTCAGTGTTGCCAAGAATTTGTGCAGTAGAGGCAGTCGGCATAGGAGCTATC 972 Query 53264 AATAAACTATTTCTAAGACCGTATGTTCTG--ATTTTATCTTTTAGAGGTTCCCAATTCC 53321 |||| | ||| | | ||| ||||| || || || ||||| || |||| | || Sbjct 973 AATAGAGAATTGCGCAAACC--ATGTTTTGCTATCTTTTCTTTAAGGACAGCCCAGTCCC 1030 Query 53322 AAAGATCCGACGGTACAACNNNNNNNNNNNNNNNTTGTAGAATACCGTTACTGGC-GTAC 53380 |||| || | || || || ||||| | || || | || Sbjct 1031 AAAGGTCTGTAGGAGTTTTGTCCCACATATCATACTGGAGGATACCTTGGCTTGCTGGAC 1090 Query 53381 GATCCTACATATGTATCGTATGGTCCTTCCTTCTCAGCTAGTTCACAACTCGCCTCTAAT 53440 ||| |||||| ||||| ||||| || ||||||| ||||||||| || |||||| Sbjct 1091 TC-CCTTGATATGTGCTGTATGCACCTTCTTTTTCAGCTAATTCACAACTAGCTTCTAAT 1149 Query 53441 GCACCGTAATAAATGGTTTCGAAGATCTTCTTATTTAGATCTTGTGCTTCCAGGCTATCA 53500 ||||| |||||||| ||||| || || | | ||| ||| | ||||| | || || Sbjct 1150 GCACCATAATAAATTGTTTCAAATATTTGTTGATTGAGAAGTATTGCTTTCTCACTTTCG 1209 Query 53501 AATGGATAATTTAAGAGA-ATAAACGCGTCTGCTAATCCTTGAACACCAATACCGATAGG 53559 | | ||| | | | | | |||||| ||||| | || |||||||||||||| ||||| Sbjct 1210 TAAG-ATATTCTCATCAACACAAACGCATCTGCCATGCCCTGAACACCAATACCAATAGG 1268 Query 53560 TCTATGTCTCTTATTAGAGATTTCAGCTTCTGGAATAGGATAATAATTAATATCTATAAT 53619 |||||||||| |||| || ||| || || || | ||||||| |||||| ||| |||| Sbjct 1269 TCTATGTCTCATATTTGAAGTTTTTGCCTCAGGGACAGGATAAAAATTAACATCAATAAC 1328 Query 53620 TTTATTGAGGTTTC---TGACAATTACTTTGACCACATCCTTCAGTTTGAGAAAATCAAA 53676 ||| || | ||| | ||||| ||||| | || || | ||| ||||| ||| Sbjct 1329 TTTGTTTAAATTTTGAGTTACAAT--CTTTGTG-ATTTCTTTTAATTTTTTAAAATTAAA 1385 Query 53677 T-TGTCCATCTATTACAAACATGTTCAATGCAATAGATGCCAGATTACAAACGGCTACCT 53735 | ||| || | ||||||||||| | ||| || || || || || || || || || | Sbjct 1386 TCTGTT-ATTTTCAACAAACATGTTAAGTGCTATGGAAGCAAGGTTGCACACTGCCACTT 1444 Query 53736 CATTAGCATCCGCA---TATTGTATTATCTCAGTGCAAAGATTACTACACTTGATGGTTC 53792 ||| | || | | ||||| | | ||||||||||||||| ||||| || || || | Sbjct 1445 CAT---CTTCTGAAGTGTATTGCACAACCTCAGTGCAAAGATTGCTACATTTAATAGTGC 1501 Query 53793 CTAAATTTTGTTGATTACTCTTTTTGTTACACGCATCCTTATAAAGAATGAATGGCGTAC 53852 | | ||||| ||||||||||||| ||||||| ||||||||||| | ||| |||| |||| Sbjct 1502 CAAGATTTTTTTGATTACTCTTTCTGTTACAAGCATCCTTATACAACATGTATGGTGTAC 1561 Query 53853 CAGTTTCAATCTGGGATTCTATAATCGCTTTCCAGACGACACGAGCCTTTATTATAGATT 53912 |||| || | |||| ||||||||| | ||||| | | |||| | | | | || Sbjct 1562 CAGTCTCCACTTGGGCTTCTATAATTGACTTCCATAACTCTTGAGCTCTGACTT--GTTT 1619 Query 53913 TGTATCTCTTTTCTCTT--TCGTATAGTGTATACAATCGTTCAAACTCGTCTCCCCAAAC 53970 | || || ||| |||| || ||| | ||| | | |||||| || ||||| || | Sbjct 1620 TATAAATCGTTTTTCTTCTTCATATTTGGCATATAGTTCTTCAAATTCCTCTCCA-AAGC 1678 Query 53971 ATTGTCCAAT-CCAGGACATTCATCCGGACACATCAACGACCACTCTCCGTCATCCTTC- 54028 | | | | |||||||| |||| |||||||| | ||| || |||||||| Sbjct 1679 AGTCAGCGAGGCCAGGACAATCATGAGGACACATGAGACTCCAAACT---TCATCCTTTT 1735 Query 54029 --ACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTAT 54086 |||| ||||||||| ||||| || ||||| | ||| ||| || ||||| | ||| Sbjct 1736 CTACTCTTTTCATAAACAGATCTGGTATCCATAAAGCATAAAACAGTTCTCTAGCTCTCA 1795 Query 54087 GTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACG 54146 ||| || || ||||| ||||| || | ||| | ||| | | ||||| | |||||| | Sbjct 1796 TTTCTTCCTTACCTGTGTTCTTCTTTAAATCCAAGAATTCAAATATATCCGCATGCCAAG 1855 Query 54147 GTTCCAAGTATATGGTCATAACTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAG 54206 | || || || || | | | || || ||||||||||| || ||||||| ||||| | Sbjct 1856 GCTCTAAATAAATTGCAAATGCGCCGGGACGTTTGTTTCCACCTTGATCTACATATCTGG 1915 Query 54207 CGGTGTTATTATAAACTCTCAACATTGGAATAATACCATTGGATGCACCATTGGTCCCGG 54266 | || || ||||| |||||||||||||| | | |||||| || | ||||| || || | Sbjct 1916 CAGTATTGTTATACACTCTCAACATTGGCACTAGACCATTTGAGACCCCATTAGTGCCAG 1975 Query 54267 AGATATAGCTTCCACTG-GCACGAAT---ATTACTAATTGATAGACCTATCCCCCCTGCC 54322 || || || ||| || | || || || || || |||||| || || || Sbjct 1976 CTATGTAAGAACC-CTGAGCTCTGATGCAATGTGTA--TG-TAAACCTATGCCACCAGCA 2031 Query 54323 ATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGATGCCCTCTATACTATCATCC 54382 |||||| |||||||| ||| ||||||| |||||| | || || || || ||||| || Sbjct 2032 GATTTAGAAATTAATGCACATTGTTTTAAAGTATCAAAAATACCTTCAATGCTATCGTCT 2091 Query 54383 ATCAT 54387 |||| Sbjct 2092 TTCAT 2096 Score = 96.9 bits (106), Expect = 4e-15 Identities = 88/111 (79%), Gaps = 0/111 (0%) Strand=Plus/Plus Query 54568 CTTGTTGTTTATTTTCAGCAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTA 54627 ||| |||||||| |||| ||| || ||| ||||||||||||| ||||||||||||||||| Sbjct 2609 CTTATTGTTTATCTTCAACAAATATGATCTTTCCAAAGTTTTGAAACCAAAATAGTTGTA 2668 Query 54628 TGAAAAGTCTCGTTCGTAAATAATAACTGAGTTGAGTTTATCCTTATATTT 54678 | ||| |||| || |||| ||| | |||| | ||| ||||| | ||| Sbjct 2669 TTTAAAATCTCTATCATAAACAATGGCAGAGTCTAATTTGTCCTTGTTTTT 2719 Score = 95.1 bits (104), Expect = 1e-14 Identities = 105/140 (75%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 54779 TTTTTTGTTTCTTTGTGTAGATTTGATACGGCTATTCTAGCGGCTAGAATGGCATAATCC 54838 || || || ||||| |||| ||| |||| |||||||| || || | ||||||||||||| Sbjct 3380 TTCTTGGTGTCTTTATGTAAATTGGATATTGCTATTCTGGCAGCCAAAATGGCATAATCC 3439 Query 54839 GGATGTTGTGTAGTACAAGTGGCTGCTATTTCGGCTGTCAGAGTGTCCAATTCTACCGTT 54898 ||||| | ||| || ||| ||||||||||| || | ||| | || | || | ||| Sbjct 3440 GGATGATCTGTGGTCTTAGTAGCTGCTATTTCTGCAGCTAGATTATCAAGCTCAGCAGTT 3499 Query 54899 GTTACTCCATTATATATTCC 54918 ||||| ||| |||||| || Sbjct 3500 GTTACACCAGAATATATGCC 3519 >seq7533 Length=2710 Score = 89.7 bits (98), Expect = 6e-13 Identities = 85/109 (78%), Gaps = 0/109 (0%) Strand=Plus/Minus Query 24621 TTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATACATATTC 24680 ||||||| || |||||||| | |||||||| ||||| || || ||||||||||| | | Sbjct 680 TTAGATAAGTCTACTTCTTCTGCAGTCCAAAACGATGCTTCAGCTTTTTTATACATCTGC 621 Query 24681 CAGATGTCATGATATTGAATTGGAAAAATAACAAATCTATTTGGATTTT 24729 || || || ||||||| ||||| || |||||||| | | ||||||| Sbjct 620 CATATATCTGGATATTGGATTGGGAATATAACAAAACGTCTAGGATTTT 572 >seq56708 Length=5257 Score = 84.2 bits (92), Expect = 3e-11 Identities = 244/372 (66%), Gaps = 13/372 (3%) Strand=Plus/Plus Query 147329 TTATGACTCCA--ATTAATCCCATGTTAGCGGAATCGTGTGATTCTGTCAATAAGGCATT 147386 ||||||||||| |||| || |||||||| ||| | || | || || | | ||| | Sbjct 2030 TTATGACTCCAGTATTA--CCGATGTTAGCAGAAGCTTGCAAGTCAGTTGAAATGGCTAT 2087 Query 147387 TAAAAAATTTCCATCAGGAATGTTTGCTGAAGTCAAATACGATGGCGAGAGAGTACAAGT 147446 ||||||| |||| || |||||| |||| | ||||| ||||| || | || ||||| Sbjct 2088 GAAAAAATGTCCAAATGGCATGTTTTCTGAGATAAAATATGATGGAGAACGGGTTCAAGT 2147 Query 147447 TCATAAAAATAATAACGAGTTTGCCTTTTTTAGTAGAAACATGAAACCAGTACTCTCTTA 147506 |||||||| || ||||| | |||| | | | ||||||||| | || | Sbjct 2148 CCATAAAAAGGGAAATGAGTTCAAATATTTTTCCCGTGCCTTAAAACCAGTAATGGCTCA 2207 Query 147507 TAAAGTGGATTATCTCAAAGAATACATACCGAAAGCATT---TAAAAAAGCTACGTCTAT 147563 ||||| | || | ||||| || |||| |||||||| |||| || | | || Sbjct 2208 CAAAGTTAGTCATTTTAAAGATTATTTACCCAAAGCATTTCCTAAAGGAGATGATTTGAT 2267 Query 147564 CGTATTGGATTCTGAAATTGTTCTTGTAGACGAACATAATGTACAGC---TCCCGTTTGG 147620 | |||||| ||||| | || | || || | ||| || | | | | || || || Sbjct 2268 C---TTGGATGCTGAAGTACTTATGGTTGATGTCAATACTGGAAAACCATTGCCTTTCGG 2324 Query 147621 AAGTTTAGGTATACACAAAAAGAAAGAATATAAAAACTCTAACATGTGTTTGTTTGTGTT 147680 | |||||||| |||||| | ||||| |||| | || | | || || | | | || Sbjct 2325 TACATTAGGTATTCACAAACAATCAGAATTTAAAGATGCTCAAGTTTGCTTATATATATT 2384 Query 147681 TGACTGTTTGTA 147692 ||| || || || Sbjct 2385 TGATTGCTTATA 2396 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 591665222973840