Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Heliconius_20pachinus_20[genbank_20GCA_5F900068735.1_202017-04-26] 277,083 sequences; 279,264,790 total letters Query= NC_001623.1 Length=133894 Score E Sequences producing significant alignments: (Bits) Value seq10526 194 1e-44 seq27511 107 2e-18 seq28654 105 6e-18 seq27512 91.5 1e-13 seq76306 86.0 5e-12 seq41046 86.0 5e-12 >seq10526 Length=5062 Score = 194 bits (214), Expect = 1e-44 Identities = 435/645 (67%), Gaps = 29/645 (4%) Strand=Plus/Plus Query 105997 GGGTTAGCCCCTTTGCCGCCCGGAAACTCCCAATCGATGTCTACACCGTCAAAGAATTTC 106056 |||||||| |||||||| || || |||||||||||||| || ||||| || ||||||||| Sbjct 3633 GGGTTAGCACCTTTGCCACCAGGGAACTCCCAATCGATATCAACACCATCGAAGAATTTC 3692 Query 106057 CACACTTGCAGAAATTCCTTAACCGAATCTACAAAAACGT-TTCT------TTTTTCAAC 106109 || | | ||||| ||||| || || | ||||| ||| |||| ||| ||||| Sbjct 3693 CATGTTAGAAGAAACTCCTTTACTGACTGCACAAAT-CGTGTTCTCTTAGATTTGTCAAC 3751 Query 106110 ATCGTGCATAAAATAAAATGGGTCTGATAGAGTCCAGCCTCCTATTGAAGGAAGAATTTT 106169 | ||| | || || || | || ||||| || || || || |||||||| || Sbjct 3752 T------AAAAAGAAGAAAGGATCGGCAAGCGTCCACCCACCAATAGAGGGAAGAATCTT 3805 Query 106170 TAAATGGGGGTTTGCTAATTTTGCCGCCATCAACTGTCCAAAATTGCCTTTATACGGCTC 106229 || | ||| ||| |||| | ||| || || ||||| |||||||| || ||||| Sbjct 3806 CAATTCAGGGCGGGCTTGTTTTAGTGACATTAATTGGCCAAAGTTGCCTTTGTAGGGCTC 3865 Query 106230 GTTCCAAGCGGACACACCTTTTTGGGGTTTTTGTACGGCGGCCCACGGATCGTGAATGGC 106289 |||||| | |||| |||||||| |||||||||| || ||||| |||||||| || | Sbjct 3866 GTTCCATGAAGACAATCCTTTTTGTGGTTTTTGTAATGCTGCCCATGGATCGTGGATTGA 3925 Query 106290 AACTTTGAAATCTTCGCGTCCCTTGCACGATCTTTGCAAAGATTCAAAGCTTCCGGGTAT 106349 |||||||| || || || || | || |||| || | | || || || || || Sbjct 3926 GACTTTGAAGTCCTCACGGCCGCTACAGGATCGCTGTAGTGCTTGGAAACTGCCTTCGAT 3985 Query 106350 CGTTTTGAGGGCGTCGTTTATTCCATCGCCGCCGCAGATGGGTATGAAACCATACAACAA 106409 | ||| | || || || || || |||||||| || || || || || || | ||| Sbjct 3986 CTCTTTTAAACTATCATTAATGCCGTCACCGCCGCAAATTGGAATAAAGCCGTAGAGCAA 4045 Query 106410 GTGTGATAAATTTGGCAAGGGAACTTTGTCTACGGGAAAGTTGCGCCCGTACACACCCCA 106469 || | | ||| || | || | || ||||| || || | || |||||||| Sbjct 4046 ATGAGTAAGATTAGGTATAGGTATACGATCCACGGGGAATTTCCTAGGATAGACACCCCA 4105 Query 106470 CTCAACAAAGTACGCAGCGACAATTTTATCC---TCTCT-CCTGCCAGGTTTGTTGTTTT 106525 || || ||||| ||| | |||| ||| ||| | | | | || || || || |||| Sbjct 4106 TTCTACGAAGTAGGCACCCACAACTTT-TCCAGATGTTTGCTTGAACGGCTTATTTTTTT 4164 Query 106526 CCAGCCATGTGTATTCGAGCGGTGCCAGATGGCCGCCGTCGGTGTCTGCGACTTTGACCA 106585 | | |||| ||||| || || | | ||| | || ||||| || || || ||| | Sbjct 4165 CTCCCAATGTATATTCCAGAGGAGGTAAATGACTTCCATCGGTATCGGCCAC---GACAA 4221 Query 106586 ACAC---GGGATCGCT--CACGGAACAGCCGTCCTCATTGCAAAG 106625 | |||||| || || | |||||||| ||||||||||| Sbjct 4222 TTTCGGTGGGATCACTTGAACTG--CAGCCGTCTTCATTGCAAAG 4264 >seq27511 Length=800 Score = 107 bits (118), Expect = 2e-18 Identities = 152/212 (72%), Gaps = 4/212 (2%) Strand=Plus/Plus Query 28961 AATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGC 29020 ||||||||| || | || ||| |||| ||||| || || || ||| |||| | | Sbjct 444 AATGCAAATTTTTGTAAAGACACTGACTGGCAAGACTATCACTTTGGAAGTGGAAGCTTC 503 Query 29021 AGAGACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCA 29080 || || | | || ||||| |||||| |||||||| ||| | ||| |||||| Sbjct 504 TGATACAATTGAAAATGTTAAGGCGAAAATTCAGGATAAAGAGGGTATTCCCCCAGATCA 563 Query 29081 ACAAAGACTTATCTTTGCGGGCAAACAACTGGAAGAT--TCCAAAACTATGGCCGATTAC 29138 ||||||||||| ||||| || || || || |||||| | | ||||| | || ||| Sbjct 564 GCAAAGACTTATTTTTGCTGGAAAGCAGCTTGAAGATGGACGCACACTAT--CTGACTAC 621 Query 29139 AATATTCAGAAGGAATCTACTCTTCACATGGT 29170 ||||||||||||||||| ||| | ||| |||| Sbjct 622 AATATTCAGAAGGAATCAACTTTGCACCTGGT 653 Score = 102 bits (112), Expect = 7e-17 Identities = 149/211 (71%), Gaps = 0/211 (0%) Strand=Plus/Plus Query 28961 AATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGC 29020 ||||||||| || | || ||| |||| |||||||| || || ||| |||| | | Sbjct 216 AATGCAAATTTTTGTAAAGACACTGACTGGCAAAACTATCACTTTGGAAGTGGAAGCTTC 275 Query 29021 AGAGACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCA 29080 || || | | || ||||| ||| ||| || |||||||| | || || || Sbjct 276 TGATACAATAGAAAATGTTAAGGCAAAGATTCAAGACAAAGAAGGCATTCCTCCTGACCA 335 Query 29081 ACAAAGACTTATCTTTGCGGGCAAACAACTGGAAGATTCCAAAACTATGGCCGATTACAA 29140 ||| || ||||| ||||| || ||||| ||||||||| || || | ||||| || Sbjct 336 ACAGAGGCTTATTTTTGCAGGAAAACAGCTGGAAGATGGACGTACATTGTCAGATTATAA 395 Query 29141 TATTCAGAAGGAATCTACTCTTCACATGGTG 29171 ||||||||||||||||||| | ||| ||||| Sbjct 396 TATTCAGAAGGAATCTACTTTGCACTTGGTG 426 Score = 89.7 bits (98), Expect = 4e-13 Identities = 105/139 (76%), Gaps = 5/139 (4%) Strand=Plus/Plus Query 29040 AAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCAACAAAGACTTATCTTTGCG 29099 ||||||||| || |||||||| || | ||| |||||| ||||||||||| ||||| Sbjct 68 AAGCAAAAA-TTCAGGATAAAGAGGGAATTCCCCCAGATCAGCAAAGACTTATTTTTGCT 126 Query 29100 GGCAAACAACTGGAAGAT--TCCAAAACTATGGCCGATTACAATATTCAGAAGGAATCTA 29157 || || || || |||||| | | ||||| | |||||||| |||||||| ||||||| Sbjct 127 GGAAAGCAGCTTGAAGATGGACGCACACTAT--CTGATTACAACATTCAGAAAGAATCTA 184 Query 29158 CTCTTCACATGGTGTTACG 29176 || | ||| | || |||| Sbjct 185 CTTTGCACCTAGTACTACG 203 >seq28654 Length=3315 Score = 105 bits (116), Expect = 6e-18 Identities = 160/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 28961 AATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGC 29020 |||||||||||| |||||||| | || || ||||| || || ||| || || | Sbjct 1247 AATGCAAATATTTGTCAAAACACTTACTGGAAAAACAATAACTTTGGAAGTTGAGCCATC 1188 Query 29021 AGAGACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCA 29080 ||| || | | || |||| || ||| ||||| ||||| | || |||||| Sbjct 1187 AGACACCATTGAAAATGTTAAAGCTAAGATTCAAGATAAGGAAGGAATTCCTCCAGATCA 1128 Query 29081 ACAAAGACTTATCTTTGCGGGCAAACAACTGGAAGATTCCAAAACTATGGCCGATTACAA 29140 |||| | |||||||| || || ||||||||||||||| | || || | || ||||| Sbjct 1127 ACAACGTCTTATCTTCGCTGGTAAACAACTGGAAGATGGCCGCACCCTGTCTGACTACAA 1068 Query 29141 TATTCAGAAGGAATCTACTCTTCACATGGTGTTACGATTACGAGGAGG 29188 ||| ||||| || || || |||||| |||| | || | |||||||| Sbjct 1067 TATCCAGAAAGAGTCGACCCTTCACTTGGTACTCCGTCTCCGAGGAGG 1020 Score = 95.1 bits (104), Expect = 1e-14 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 28962 ATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGCA 29021 ||||| || || | || ||| |||| || ||||| || || ||| |||||| || Sbjct 1018 ATGCAGATCTTTGTAAAGACACTGACAGGGAAAACTATCACATTAGAAGTTGAACCCTCA 959 Query 29022 GAGACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCAA 29081 || || | | || |||| || || || ||||| ||| | ||| ||||||| Sbjct 958 GACACTATTGAAAATGTTAAAGCTAAGATCCAAGACAAAGAGGGTATTCCCCCAGATCAA 899 Query 29082 CAAAGACTTATCTTTGCGGGCAAACAACTGGAAGATTCCAAAACTATGGCCGATTACAAT 29141 ||| | || || || || ||||| || ||||| ||| | ||| | | || || ||| Sbjct 898 CAACGTCTCATTTTCGCTGGCAAGCAGCTGGAGGATGGCCGTACTCTCTCTGACTATAAT 839 Query 29142 ATTCAGAAGGAATCTACTCTTCACATGGTGTTACGATTACGAGGAGG 29188 |||||||| || || ||| | ||| |||| ||||| ||||||||||| Sbjct 838 ATTCAGAAAGAGTCCACTTTGCACTTGGTATTACGTTTACGAGGAGG 792 Score = 91.5 bits (100), Expect = 1e-13 Identities = 146/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 28962 ATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGCA 29021 ||||||||||| ||||||||||||| || || ||||||||| ||| ||||| | Sbjct 1474 ATGCAAATATTTGTCAAAACATTGACTGGAAAGACCATTACCCTGGAAGTAGAACCATCT 1415 Query 29022 GAGACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCAA 29081 || || | | || | || ||||| ||||| || || | ||| ||| ||| Sbjct 1414 GACACAATCGAGAATGTCAAAGCTAAAATACAGGATAAGGAGGGCATCCCCCCAGACCAA 1355 Query 29082 CAAAGACTTATCTTTGCGGGCAAACAACTGGAAGATTCCAAAACTATGGCCGATTACAAT 29141 || | || || ||||| || || ||| |||||||| ||| || | ||||||||| Sbjct 1354 CAGCGTCTCATTTTTGCTGGAAAGCAATTGGAAGATGGTCGCACTTTGTCTGATTACAAT 1295 Query 29142 ATTCAGAAGGAATCTACTCTTCACATGGTG 29171 |||||||| || || || || ||| | ||| Sbjct 1294 ATTCAGAAAGAGTCAACCCTGCACTTAGTG 1265 Score = 86.0 bits (94), Expect = 5e-12 Identities = 85/110 (77%), Gaps = 0/110 (0%) Strand=Plus/Minus Query 29055 GATAAAGAAGGTGTGCCCGTAGATCAACAAAGACTTATCTTTGCGGGCAAACAACTGGAA 29114 || ||||| ||| | ||| ||||||||| || ||||| ||||| || |||||||||||| Sbjct 2293 GACAAAGAGGGTATTCCCCCAGATCAACAGAGGCTTATTTTTGCTGGAAAACAACTGGAA 2234 Query 29115 GATTCCAAAACTATGGCCGATTACAATATTCAGAAGGAATCTACTCTTCA 29164 ||| | || | | ||||| |||||||| ||||||||||| || || Sbjct 2233 GATGGCCGTACATTATCTGATTATAATATTCAAAAGGAATCTACCCTACA 2184 >seq27512 Length=242 Score = 91.5 bits (100), Expect = 1e-13 Identities = 142/201 (71%), Gaps = 4/201 (2%) Strand=Plus/Minus Query 28961 AATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGC 29020 |||||||||||| | || ||| |||| ||||| || || || ||| || ||| | Sbjct 228 AATGCAAATATTTGTAAAGACACTGACTGGCAAGACTATCACACTGGAAGTTGAGCCCTC 169 Query 29021 AGAGACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCA 29080 || || | | || ||||| ||||||| ||||| ||||| | || ||| || Sbjct 168 TGACACAATCGAAAATGTTAAGGCAAAAATTCAAGATAAGGAAGGCATTCCTCCAGACCA 109 Query 29081 ACAAAGACTTATCTTTGCGGGCAAACAACTGGAAGAT--TCCAAAACTATGGCCGATTAC 29138 |||||| ||||| ||||| || || || || || ||| | | ||||| | || ||| Sbjct 108 ACAAAGGCTTATTTTTGCTGGAAAGCAGCTTGAGGATGGACGTACACTAT--CAGACTAC 51 Query 29139 AATATTCAGAAGGAATCTACT 29159 ||||||||||| ||||||||| Sbjct 50 AATATTCAGAAAGAATCTACT 30 >seq76306 Length=316 Score = 86.0 bits (94), Expect = 5e-12 Identities = 148/215 (69%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 28962 ATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGCA 29021 |||||||| ||| | ||||| || || || |||||||| || ||| |||| | | Sbjct 57 ATGCAAATCTTCGTAAAAACTTTAACTGGGAAAACCATCACATTGGAAGTGGAAGCTTCT 116 Query 29022 GAGACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCAA 29081 || || | | | | ||| ||| ||| || || ||||| | || ||||||| Sbjct 117 GATACAATCGAAAACGTAAAGGCAAAGATTCAAGACAAGGAAGGCATTCCTCCAGATCAA 176 Query 29082 CAAAGACTTATCTTTGCGGGCAAACAACTGGAAGATTCCAAAACTATGGCCGATTACAAT 29141 |||||||| || || || || || |||||||||||| || || | || || ||| Sbjct 177 CAAAGACTGATTTTCGCCGGAAAGCAACTGGAAGATGGGCGCACATTGTCAGACTATAAT 236 Query 29142 ATTCAGAAGGAATCTACTCTTCACATGGTGTTACG 29176 || ||||||||||||||| | ||| | || || || Sbjct 237 ATCCAGAAGGAATCTACTTTGCACTTAGTTTTGCG 271 >seq41046 Length=7774 Score = 86.0 bits (94), Expect = 5e-12 Identities = 163/238 (68%), Gaps = 3/238 (1%) Strand=Plus/Minus Query 28953 AGTGTAAAAATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACG 29012 ||| | | ||||||||| ||| |||| || | ||||| |||||||||||| ||| | Sbjct 7391 AGTCTCACAATGCAAATTTTCGTCAAGACCCTTACGGGTAAAACCATTACCCTCGAGGTG 7332 Query 29013 GAACCCGCAGAGACGGTGGCCGATCTT--AAGCAAAAAATTGCCGATAAAGAAGGTGTGC 29070 || || | || || | | || || |||| ||||| ||||| |||||| | | Sbjct 7331 GAGGCCTCTGATACTATAGAAAATGTTAAAAGC-TAAAATCCAAGATAAGGAAGGTATTC 7273 Query 29071 CCGTAGATCAACAAAGACTTATCTTTGCGGGCAAACAACTGGAAGATTCCAAAACTATGG 29130 | ||| || ||| | | |||||||| || |||||||| |||||| || || Sbjct 7272 CACCAGACCAGCAACGTTTGATCTTTGCTGGTAAACAACTAGAAGATGGACGTACATTGT 7213 Query 29131 CCGATTACAATATTCAGAAGGAATCTACTCTTCACATGGTGTTACGATTACGAGGAGG 29188 | || ||||| ||||| |||||||| || | || | ||| | ||| | || ||||| Sbjct 7212 CTGACTACAACATTCAAAAGGAATCCACATTGCATCTTGTGCTTCGACTTCGCGGAGG 7155 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 426889531146365