Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Heliconius_20pachinus_20[genbank_20GCA_5F900068735.1_202017-04-26] 277,083 sequences; 279,264,790 total letters Query= NC_001962.1 Length=128413 Score E Sequences producing significant alignments: (Bits) Value seq10526 197 1e-45 seq28654 95.1 1e-14 seq27511 93.3 3e-14 >seq10526 Length=5062 Score = 197 bits (218), Expect = 1e-45 Identities = 433/640 (68%), Gaps = 19/640 (3%) Strand=Plus/Plus Query 97764 GGGTTAGCCCCTTTGCCGCCCGGAAATTCCCAATCGACGTCGACACCATCAAAAAATTTC 97823 |||||||| |||||||| || || || |||||||||| || |||||||| || |||||| Sbjct 3633 GGGTTAGCACCTTTGCCACCAGGGAACTCCCAATCGATATCAACACCATCGAAGAATTTC 3692 Query 97824 CACACTTGCAAAAATTCCTTAACCGACTCTACAAAAACGT-TTCTTTTTTCAACGTCGTG 97882 || | | | ||| ||||| || |||| ||||| ||| |||| || ||| Sbjct 3693 CATGTTAGAAGAAACTCCTTTACTGACTGCACAAAT-CGTGTTCTCTTAGATTTGTCAAC 3751 Query 97883 CATGAAATAGAACGGGTCCGACAGAGTCCAGCCTCCTATTGAAGGAAGAATTTTTAGATG 97942 | || |||| || || | || ||||| || || || || |||||||| || | | Sbjct 3752 TAAAAAGAAGAAAGGATCGGCAAGCGTCCACCCACCAATAGAGGGAAGAATCTTCAATTC 3811 Query 97943 TGGGTTTGCTAATTTCGCCGCCATCAATTGTCCAAAATTGCCTTTGTACGGTTCGTTCCA 98002 ||| ||| ||| | ||| ||||| ||||| ||||||||||| || |||||||| Sbjct 3812 AGGGCGGGCTTGTTTTAGTGACATTAATTGGCCAAAGTTGCCTTTGTAGGGCTCGTTCCA 3871 Query 98003 AGCGGACACGCCCTTTTGGGGTTTTTGTACGGCGGCCCACGGATCGTGGATGGCAACTTT 98062 | |||| || ||||| |||||||||| || ||||| ||||||||||| | ||||| Sbjct 3872 TGAAGACAATCCTTTTTGTGGTTTTTGTAATGCTGCCCATGGATCGTGGATTGAGACTTT 3931 Query 98063 GAAATCTTCGCGTCCCCTGCACGATCGTTGCAGAGCTTCAAAACTTCCGGGTATTGTTTT 98122 ||| || || || || || || ||||| || || |||| ||||| || || ||| Sbjct 3932 GAAGTCCTCACGGCCGCTACAGGATCGCTGTAGTGCTTGGAAACTGCCTTCGATCTCTTT 3991 Query 98123 GAGGGCGTCGTTTATTCCATCGCCACCGCAGATGGGTATGAAACCGTACAACAAGTGCGA 98182 | || || || || || || ||||| || || || || ||||| | ||| || | Sbjct 3992 TAAACTATCATTAATGCCGTCACCGCCGCAAATTGGAATAAAGCCGTAGAGCAAATGAGT 4051 Query 98183 TAAATTTGGCAAGGGAACTTTGTCTACGGGAAAGCTGCGCCCGTACACACCCCACTCGAC 98242 | ||| || | || | || ||||| || | | || |||||||| || || Sbjct 4052 AAGATTAGGTATAGGTATACGATCCACGGGGAATTTCCTAGGATAGACACCCCATTCTAC 4111 Query 98243 AAAGTACGCAGCGACAATTTTATCC---TCTCTTC-TGCCGGGTTTGTTGTTTTCCAGCC 98298 ||||| ||| | |||| ||| ||| | | | | || || || || ||||| | Sbjct 4112 GAAGTAGGCACCCACAACTTT-TCCAGATGTTTGCTTGAACGGCTTATTTTTTTCTCCCA 4170 Query 98299 ATGTGTATTCGAGCGGCGCCAGATGACCGCCGTCGGTGTCTGCGATTTTGACCAACAC-- 98356 |||| ||||| || || | | ||||| || ||||| || || | ||| | | Sbjct 4171 ATGTATATTCCAGAGGAGGTAAATGACTTCCATCGGTATCGGCCA---CGACAATTTCGG 4227 Query 98357 -GGGATCGCTTATGGAA---CAGCCGTCCTCATTGCAAAG 98392 |||||| ||| ||| |||||||| ||||||||||| Sbjct 4228 TGGGATCACTT---GAACTGCAGCCGTCTTCATTGCAAAG 4264 >seq28654 Length=3315 Score = 95.1 bits (104), Expect = 1e-14 Identities = 147/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 25035 ATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGCA 25094 ||||||||||| ||||||||||||| || || ||||||||| ||| ||||| | Sbjct 1474 ATGCAAATATTTGTCAAAACATTGACTGGAAAGACCATTACCCTGGAAGTAGAACCATCT 1415 Query 25095 GAGACGGTGGCCGATCTCAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCAA 25154 || || | | || |||| ||||| ||||| || || | ||| ||| ||| Sbjct 1414 GACACAATCGAGAATGTCAAAGCTAAAATACAGGATAAGGAGGGCATCCCCCCAGACCAA 1355 Query 25155 CAAAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCCAAAACTATGGCCGATTACAAT 25214 || | || || ||||| || || |||||||||||| ||| || | ||||||||| Sbjct 1354 CAGCGTCTCATTTTTGCTGGAAAGCAATTGGAAGATGGTCGCACTTTGTCTGATTACAAT 1295 Query 25215 ATTCAAAAGGAATCTACTCTTCACATGGTG 25244 ||||| || || || || || ||| | ||| Sbjct 1294 ATTCAGAAAGAGTCAACCCTGCACTTAGTG 1265 Score = 91.5 bits (100), Expect = 1e-13 Identities = 157/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 25034 AATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGC 25093 |||||||||||| |||||||| | || || ||||| || || ||| || || | Sbjct 1247 AATGCAAATATTTGTCAAAACACTTACTGGAAAAACAATAACTTTGGAAGTTGAGCCATC 1188 Query 25094 AGAGACGGTGGCCGATCTCAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCA 25153 ||| || | | || | || || ||| ||||| ||||| | || |||||| Sbjct 1187 AGACACCATTGAAAATGTTAAAGCTAAGATTCAAGATAAGGAAGGAATTCCTCCAGATCA 1128 Query 25154 ACAAAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCCAAAACTATGGCCGATTACAA 25213 |||| | |||||||| || || |||||| |||||||| | || || | || ||||| Sbjct 1127 ACAACGTCTTATCTTCGCTGGTAAACAACTGGAAGATGGCCGCACCCTGTCTGACTACAA 1068 Query 25214 TATTCAAAAGGAATCTACTCTTCACATGGTGTTACGATTACGAGGAGG 25261 ||| || || || || || |||||| |||| | || | |||||||| Sbjct 1067 TATCCAGAAAGAGTCGACCCTTCACTTGGTACTCCGTCTCCGAGGAGG 1020 Score = 87.8 bits (96), Expect = 1e-12 Identities = 150/218 (69%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 25032 AAAATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCC 25091 |||||||| || || | |||||| | ||||| ||||||||||| ||| ||||| Sbjct 2617 AAAATGCAGATCTTTGTGAAAACACTTACGGGTAAAACCATTACTTTGGAAGTTGAACCT 2558 Query 25092 GCAGAGACGGTGGCCGATCTCAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGAT 25151 | || || | | || | || |||||| || || ||||| | || |||| Sbjct 2557 TCCGATACTATTGAAAATGTAAAAGCCAAAATTCAAGACAAGGAAGGCATTCCTCCAGAT 2498 Query 25152 CAACAAAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCCAAAACTATGGCCGATTAC 25211 |||||| | | || || || || || ||||||||||| ||| | | || || Sbjct 2497 CAACAACGTTTGATTTTCGCTGGAAAGCAATTGGAAGACGGACGCACTCTTTCTGACTAT 2438 Query 25212 AATATTCAAAAGGAATCTACTCTTCACATGGTGTTACG 25249 ||||||||||| ||||||||||||||| |||| || || Sbjct 2437 AATATTCAAAAAGAATCTACTCTTCACTTGGTATTGCG 2400 Score = 86.0 bits (94), Expect = 5e-12 Identities = 85/110 (77%), Gaps = 0/110 (0%) Strand=Plus/Minus Query 25128 GATAAAGAAGGTGTGCCCGTAGATCAACAAAGACTTATCTTTGCGGGCAAACAATTGGAA 25187 || ||||| ||| | ||| ||||||||| || ||||| ||||| || |||||| ||||| Sbjct 2293 GACAAAGAGGGTATTCCCCCAGATCAACAGAGGCTTATTTTTGCTGGAAAACAACTGGAA 2234 Query 25188 GATTCCAAAACTATGGCCGATTACAATATTCAAAAGGAATCTACTCTTCA 25237 ||| | || | | ||||| |||||||||||||||||||| || || Sbjct 2233 GATGGCCGTACATTATCTGATTATAATATTCAAAAGGAATCTACCCTACA 2184 >seq27511 Length=800 Score = 93.3 bits (102), Expect = 3e-14 Identities = 149/212 (70%), Gaps = 4/212 (2%) Strand=Plus/Plus Query 25034 AATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGC 25093 ||||||||| || | || ||| |||| ||||| || || || ||| |||| | | Sbjct 444 AATGCAAATTTTTGTAAAGACACTGACTGGCAAGACTATCACTTTGGAAGTGGAAGCTTC 503 Query 25094 AGAGACGGTGGCCGATCTCAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCA 25153 || || | | || | ||| |||||| |||||||| ||| | ||| |||||| Sbjct 504 TGATACAATTGAAAATGTTAAGGCGAAAATTCAGGATAAAGAGGGTATTCCCCCAGATCA 563 Query 25154 ACAAAGACTTATCTTTGCGGGCAAACAATTGGAAGAT--TCCAAAACTATGGCCGATTAC 25211 ||||||||||| ||||| || || || | |||||| | | ||||| | || ||| Sbjct 564 GCAAAGACTTATTTTTGCTGGAAAGCAGCTTGAAGATGGACGCACACTAT--CTGACTAC 621 Query 25212 AATATTCAAAAGGAATCTACTCTTCACATGGT 25243 |||||||| |||||||| ||| | ||| |||| Sbjct 622 AATATTCAGAAGGAATCAACTTTGCACCTGGT 653 Score = 87.8 bits (96), Expect = 1e-12 Identities = 146/211 (69%), Gaps = 0/211 (0%) Strand=Plus/Plus Query 25034 AATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGC 25093 ||||||||| || | || ||| |||| |||||||| || || ||| |||| | | Sbjct 216 AATGCAAATTTTTGTAAAGACACTGACTGGCAAAACTATCACTTTGGAAGTGGAAGCTTC 275 Query 25094 AGAGACGGTGGCCGATCTCAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCA 25153 || || | | || | ||| ||| ||| || |||||||| | || || || Sbjct 276 TGATACAATAGAAAATGTTAAGGCAAAGATTCAAGACAAAGAAGGCATTCCTCCTGACCA 335 Query 25154 ACAAAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCCAAAACTATGGCCGATTACAA 25213 ||| || ||||| ||||| || ||||| |||||||| || || | ||||| || Sbjct 336 ACAGAGGCTTATTTTTGCAGGAAAACAGCTGGAAGATGGACGTACATTGTCAGATTATAA 395 Query 25214 TATTCAAAAGGAATCTACTCTTCACATGGTG 25244 |||||| |||||||||||| | ||| ||||| Sbjct 396 TATTCAGAAGGAATCTACTTTGCACTTGGTG 426 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 409409560131362