Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Heliconius_20pachinus_20[genbank_20GCA_5F900068735.1_202017-04-26]
277,083 sequences; 279,264,790 total letters
Query= NC_001973.1
Length=161046
Score E
Sequences producing significant alignments: (Bits) Value
seq200937 230 2e-55
seq10526 120 3e-22
seq28654 113 5e-20
seq76306 111 2e-19
seq41046 95.1 1e-14
seq27511 91.5 2e-13
seq27512 82.4 8e-11
>seq200937
Length=824
Score = 230 bits (254), Expect = 2e-55
Identities = 315/439 (72%), Gaps = 17/439 (4%)
Strand=Plus/Minus
Query 116576 GAGCCGCTGCTGCGCGAGAACCCCCGCCGGTTCGTGATTTTCCCCATACAATACCCGGAC 116635
|||||||| ||||||||||||| || ||||| ||| | || || || | |||| ||
Sbjct 475 GAGCCGCTCCTGCGCGAGAACCACCATCGGTTTGTGTTGTTTCCAATCAAGTACCACGAA 416
Query 116636 ATGTGG--CGCATGTACAAAAAGGCCGAGGCGTCGTTCTGGACCGTCGAGGAGGTGGACC 116693
|| ||| ||||| |||| || ||||||||||||||||| | ||||||| ||||||
Sbjct 415 ATCTGGGCCGCAT--ACAAGCGTGCTGAGGCGTCGTTCTGGACGGCCGAGGAGATGGACC 358
Query 116694 TGTCCAAGGACACGAGCGACTGGGAGCGC---TTGAACGACAACGAGCGCCATTTCATCA 116750
|||| ||||| | | ||||||||| | |||| ||| |||||||| | |||||||
Sbjct 357 TGTCGAAGGATATGCACGACTGGGACAACAAGCTGAATGACGACGAGCGCTACTTCATCA 298
Query 116751 AGCACGTGCTGGCCTTTTTCGCCGCCAGCGACGGCATCGTCAACGAGAATCTGGTCGAGC 116810
||||||| || ||||| || ||| || || ||||||||||||||||| ||| ||||||
Sbjct 297 AGCACGTCCTTGCCTTCTTTGCCACCTCGGATGGCATCGTCAACGAGAACCTGCTCGAGC 238
Query 116811 GTTTCGCTCAGGAGGTGCAGGTGGCCGAGGCGCGGTGCTTCTACGGCTTTCAGATCGCCA 116870
| ||| | | ||||| |||| |||| ||||||| || |||||| |
Sbjct 237 GCTTCTCGAACGAGGTCCAGGCCCCCGA----------ATCTACGGGTTCCAGATCATGA 188
Query 116871 TGGAGAACGTGCACTCGGAAATGTATTCGACCCTCATCGACACGTACGTGCGCTCTTCGG 116930
|||||||| | || || || | || ||| |||||||||||| ||| | ||| |||
Sbjct 187 TGGAGAACATCCATTCCGAGGTCTACTCGCTCCTCATCGACACTTACATCCGCGACTCGA 128
Query 116931 AGGAGAAGCTCCGTTTGTTGAACGCCATCGAGACGATGCCGTGCGTCAAAGAGAAGGCCG 116990
||| | | | |||| | | || || ||||| || ||| || | ||||| |
Sbjct 127 CAGAGCGCCAGCATCTGTTCGAGGGTATTGACACGATCCCCTGCATCCGCAAAAAGGCAG 68
Query 116991 AGTGGGCGCTGCGCTGGAT 117009
|||||||||| || |||||
Sbjct 67 AGTGGGCGCTCCGGTGGAT 49
>seq10526
Length=5062
Score = 120 bits (132), Expect = 3e-22
Identities = 251/374 (67%), Gaps = 0/374 (0%)
Strand=Plus/Plus
Query 65660 AACGGATCGGACAGGGTCCAGCCGCCGATGGAGGGCAGCACGCGCAGGTGCGGGTGCGCC 65719
|| ||||||| || ||||| || || || ||||| || | || | ||| | ||
Sbjct 3762 AAAGGATCGGCAAGCGTCCACCCACCAATAGAGGGAAGAATCTTCAATTCAGGGCGGGCT 3821
Query 65720 TTCTTGATGGCCATCAGCTGGCCGAAGTTGCCCTTGTACGGCTCGCTCCACGCGGTCACG 65779
| || | | ||| | ||||| |||||||| ||||| |||||| |||| | | ||
Sbjct 3822 TGTTTTAGTGACATTAATTGGCCAAAGTTGCCTTTGTAGGGCTCGTTCCATGAAGACAAT 3881
Query 65780 CCCTTTTGCGGCTTCTGCACGGCCGCCCACGGGTCGTGCACCGCCAGCTTGAAGTCGTCG 65839
|| ||||| || || || | || ||||| || ||||| | | | |||||||| ||
Sbjct 3882 CCTTTTTGTGGTTTTTGTAATGCTGCCCATGGATCGTGGATTGAGACTTTGAAGTCCTCA 3941
Query 65840 CGGCCCGCGCACGAGCGCTGCAGCGCCTCGAAGCTGCCCGCGATGGACTTGAGGCTGTCG 65899
||||| || || ||||| || || | ||| ||||| |||| || | || ||
Sbjct 3942 CGGCCGCTACAGGATCGCTGTAGTGCTTGGAAACTGCCTTCGATCTCTTTTAAACTATCA 4001
Query 65900 TTGATGCCGTCCCCGCCGCACATCGGCACGAAGCCGTACAGCAGATGCGTGAGGTTGGGC 65959
|| |||||||| |||||||| || || | |||||||| |||| ||| || || || ||
Sbjct 4002 TTAATGCCGTCACCGCCGCAAATTGGAATAAAGCCGTAGAGCAAATGAGTAAGATTAGGT 4061
Query 65960 ACGGGCACCTTGTCGGCGGGAAAGTCGCGCCCGTACACGCCCCACTCGACGAAGTAGGCG 66019
| || | || |||| || | | || || ||||| || |||||||||||
Sbjct 4062 ATAGGTATACGATCCACGGGGAATTTCCTAGGATAGACACCCCATTCTACGAAGTAGGCA 4121
Query 66020 GCCACCACCTTGCC 66033
|||| || || ||
Sbjct 4122 CCCACAACTTTTCC 4135
>seq28654
Length=3315
Score = 113 bits (124), Expect = 5e-20
Identities = 154/215 (72%), Gaps = 0/215 (0%)
Strand=Plus/Minus
Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749
||||| || || || ||||| || || || || ||||| ||| | || || ||| || |
Sbjct 1930 ATGCAGATTTTTGTTAAAACCCTAACTGGAAAGACCATTACCCTGGAAGTGGAACCCTCT 1871
Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809
|| | | ||| | || | ||||| | ||||||||||||||||| | || |||
Sbjct 1870 GATACTATTGAAAATGTAAAAGCTAAAATCCAAGACAAAGAGGGCATCCCACCTGATCAG 1811
Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 40869
|| || || |||| || || || || |||| || | ||||||||| |||||||||
Sbjct 1810 CAGCGTCTTATCTTTGCTGGTAAGCAATTGGAAGATGGTCGCACCCTCTCTGACTACAAC 1751
Query 40870 ATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCG 40904
||||| |||||| | || || |||||||| ||||
Sbjct 1750 ATCCAAAAGGAGTCTACCCTTCATCTAGTACTGCG 1716
Score = 107 bits (118), Expect = 2e-18
Identities = 155/216 (72%), Gaps = 2/216 (1%)
Strand=Plus/Minus
Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749
||||||||||| || || || || || ||||| || || || | || || || |||| |
Sbjct 1702 ATGCAAATATTTGTCAAGACACTAACAGGCAAGACTATAACTCTGGAGGTGGA-GCCATC 1644
Query 40750 -GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808
|||| | | ||| | |||| || |||| || |||||||| || ||| | || ||
Sbjct 1643 TGACACCATTGAAAATGTAAAGGCTAAGATTCAAGATAAAGAGGGTATTCCCCCAGATCA 1584
Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868
||||| || |||| || ||||| ||||| || || | |||||||| ||||||||
Sbjct 1583 ACAACGTCTTATCTTTGCTGGCAAGCAGCTAGAAGATGGTCGCACCCTGTCTGACTACAA 1524
Query 40869 CATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCG 40904
|||||| || ||| | || || ||| |||| ||||
Sbjct 1523 CATCCAAAAAGAGTCTACCCTTCATTTAGTACTGCG 1488
Score = 96.9 bits (106), Expect = 4e-15
Identities = 143/203 (70%), Gaps = 0/203 (0%)
Strand=Plus/Minus
Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749
||||| || || ||||| || || || || ||||| ||||| | || || ||| || |
Sbjct 1018 ATGCAGATCTTTGTAAAGACACTGACAGGGAAAACTATCACATTAGAAGTTGAACCCTCA 959
Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809
|||| | ||| | || | || || | ||||||||||| || ||| | || ||
Sbjct 958 GACACTATTGAAAATGTTAAAGCTAAGATCCAAGACAAAGAGGGTATTCCCCCAGATCAA 899
Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 40869
||||| ||||| | ||| ||||| |||||||| || | || || ||| ||||| ||
Sbjct 898 CAACGTCTCATTTTCGCTGGCAAGCAGCTGGAGGATGGCCGTACTCTCTCTGACTATAAT 839
Query 40870 ATCCAGAAGGAGGCCACGCTGCA 40892
|| ||||| ||| |||| ||||
Sbjct 838 ATTCAGAAAGAGTCCACTTTGCA 816
Score = 93.3 bits (102), Expect = 4e-14
Identities = 145/205 (71%), Gaps = 2/205 (1%)
Strand=Plus/Minus
Query 40689 AATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCA- 40747
|||||||||||| || ||||| || || || ||||| || || | || || | |||||
Sbjct 1247 AATGCAAATATTTGTCAAAACACTTACTGGAAAAACAATAACTTTGGAAGTTG-AGCCAT 1189
Query 40748 CCGACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACC 40807
| |||| | | ||| | || | || |||| || || || || || || | || |
Sbjct 1188 CAGACACCATTGAAAATGTTAAAGCTAAGATTCAAGATAAGGAAGGAATTCCTCCAGATC 1129
Query 40808 AGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACA 40867
| ||||| || |||| ||| || ||||| ||||| || | |||||||| |||||||
Sbjct 1128 AACAACGTCTTATCTTCGCTGGTAAACAACTGGAAGATGGCCGCACCCTGTCTGACTACA 1069
Query 40868 ACATCCAGAAGGAGGCCACGCTGCA 40892
| |||||||| ||| | || || ||
Sbjct 1068 ATATCCAGAAAGAGTCGACCCTTCA 1044
Score = 86.0 bits (94), Expect = 6e-12
Identities = 155/227 (68%), Gaps = 0/227 (0%)
Strand=Plus/Minus
Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749
|||||||| || || ||||| ||||| || ||||| || || | || || ||||| |
Sbjct 2158 ATGCAAATCTTTGTTAAAACACTCACTGGAAAAACAATTACTTTAGAAGTTGAAGCTTCT 2099
Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809
|||| | ||| | || | ||||| | |||||||| ||||| || |||| ||
Sbjct 2098 GACACAATTGAAAATGTGAAAGCTAAAATCCAAGACAAAGAAGGCATTCCTCCGGATCAA 2039
Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 40869
||||| || || | |||||||| || | || || | || || || |||||||||
Sbjct 2038 CAACGTCTTATTTTTGCGGGCAAGCAATTAGAAGATGGTCGTACACTGTCTGACTACAAC 1979
Query 40870 ATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGG 40916
||||| || || | || |||| |||| | || || || || ||
Sbjct 1978 ATCCAAAAAGAATCTACTTTGCACTTAGTACTTCGTTTAAGAGGTGG 1932
Score = 82.4 bits (90), Expect = 8e-11
Identities = 144/210 (69%), Gaps = 0/210 (0%)
Strand=Plus/Minus
Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749
||||||||||| || ||||| | || || || ||||| ||| | || || ||| | |
Sbjct 1474 ATGCAAATATTTGTCAAAACATTGACTGGAAAGACCATTACCCTGGAAGTAGAACCATCT 1415
Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809
|||| | | | |||| | ||||| | || || |||||||||||| | |||||
Sbjct 1414 GACACAATCGAGAATGTCAAAGCTAAAATACAGGATAAGGAGGGCATCCCCCCAGACCAA 1355
Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 40869
|| || ||||| | || || || || |||| || | ||||| | || |||||
Sbjct 1354 CAGCGTCTCATTTTTGCTGGAAAGCAATTGGAAGATGGTCGCACTTTGTCTGATTACAAT 1295
Query 40870 ATCCAGAAGGAGGCCACGCTGCATCTAGTG 40899
|| ||||| ||| | || ||||| |||||
Sbjct 1294 ATTCAGAAAGAGTCAACCCTGCACTTAGTG 1265
>seq76306
Length=316
Score = 111 bits (122), Expect = 2e-19
Identities = 163/228 (71%), Gaps = 2/228 (1%)
Strand=Plus/Plus
Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749
|||||||| ||||||||||| | || || ||||||||||| | || || ||||| |
Sbjct 57 ATGCAAATCTTCGTAAAAACTTTAACTGGGAAAACCATCACATTGGAAGTGGAAGCTTCT 116
Query 40750 GACAGCGT-GCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808
|| | | | ||||| | |||| ||| |||| ||||| || ||||| || | || ||
Sbjct 117 GATACAATCGAAAACG-TAAAGGCAAAGATTCAAGACAAGGAAGGCATTCCTCCAGATCA 175
Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868
||| |||| || | ||| || || || ||||| || | |||||| | ||||| ||
Sbjct 176 ACAAAGACTGATTTTCGCCGGAAAGCAACTGGAAGATGGGCGCACATTGTCAGACTATAA 235
Query 40869 CATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGG 40916
||||||||||| | || |||| |||| ||||| | ||||| ||
Sbjct 236 TATCCAGAAGGAATCTACTTTGCACTTAGTTTTGCGTCTAAGGGGTGG 283
>seq41046
Length=7774
Score = 95.1 bits (104), Expect = 1e-14
Identities = 149/212 (70%), Gaps = 1/212 (0%)
Strand=Plus/Minus
Query 40689 AATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCAC 40748
||||||||| ||||| || || || ||||| |||||||| ||| |||| || || ||| |
Sbjct 7383 AATGCAAATTTTCGTCAAGACCCTTACGGGTAAAACCATTACCCTCGAGGTGGAGGCCTC 7324
Query 40749 CGACAGCGT-GCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACC 40807
|| | | | ||| | | || | ||||| | || || || || || || | ||||
Sbjct 7323 TGATACTATAGAAAATGTTAAAAGCTAAAATCCAAGATAAGGAAGGTATTCCACCAGACC 7264
Query 40808 AGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACA 40867
||||||| | |||| || || ||||| || || || | || || | |||||||
Sbjct 7263 AGCAACGTTTGATCTTTGCTGGTAAACAACTAGAAGATGGACGTACATTGTCTGACTACA 7204
Query 40868 ACATCCAGAAGGAGGCCACGCTGCATCTAGTG 40899
|||| || ||||| |||| ||||||| |||
Sbjct 7203 ACATTCAAAAGGAATCCACATTGCATCTTGTG 7172
>seq27511
Length=800
Score = 91.5 bits (100), Expect = 2e-13
Identities = 157/228 (69%), Gaps = 0/228 (0%)
Strand=Plus/Plus
Query 40689 AATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCAC 40748
||||||||| || ||||| || || || |||||||| ||||| | || || ||||| |
Sbjct 216 AATGCAAATTTTTGTAAAGACACTGACTGGCAAAACTATCACTTTGGAAGTGGAAGCTTC 275
Query 40749 CGACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808
|| | | ||| | |||| ||| |||| |||||||| ||||| || | |||||
Sbjct 276 TGATACAATAGAAAATGTTAAGGCAAAGATTCAAGACAAAGAAGGCATTCCTCCTGACCA 335
Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868
|| | || || | || || ||||||||||| || | || || | || || ||
Sbjct 336 ACAGAGGCTTATTTTTGCAGGAAAACAGCTGGAAGATGGACGTACATTGTCAGATTATAA 395
Query 40869 CATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGG 40916
|| |||||||| | || |||| | ||| ||||| | ||||| ||
Sbjct 396 TATTCAGAAGGAATCTACTTTGCACTTGGTGCTGCGCCTTAGGGGTGG 443
>seq27512
Length=242
Score = 82.4 bits (90), Expect = 8e-11
Identities = 155/228 (68%), Gaps = 0/228 (0%)
Strand=Plus/Minus
Query 40689 AATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCAC 40748
|||||||||||| ||||| || || || ||||| || ||||| | || || || || |
Sbjct 228 AATGCAAATATTTGTAAAGACACTGACTGGCAAGACTATCACACTGGAAGTTGAGCCCTC 169
Query 40749 CGACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808
|||| | ||| | |||| |||||||| || || || ||||| || | |||||
Sbjct 168 TGACACAATCGAAAATGTTAAGGCAAAAATTCAAGATAAGGAAGGCATTCCTCCAGACCA 109
Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868
||| | || || | || || || ||||| || || | || || || ||||||||
Sbjct 108 ACAAAGGCTTATTTTTGCTGGAAAGCAGCTTGAGGATGGACGTACACTATCAGACTACAA 49
Query 40869 CATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGG 40916
|| ||||| || | || | ||| |||| | || |||| || ||
Sbjct 48 TATTCAGAAAGAATCTACTTTACATTTAGTACTTCGTCTGAGAGGTGG 1
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 513434718980080
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