Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Heliconius_20pachinus_20[genbank_20GCA_5F900068735.1_202017-04-26] 277,083 sequences; 279,264,790 total letters Query= NC_002169.1 Length=135611 Score E Sequences producing significant alignments: (Bits) Value seq10526 165 7e-36 seq28654 122 8e-23 seq27511 104 2e-17 seq41046 100 2e-16 >seq10526 Length=5062 Score = 165 bits (182), Expect = 7e-36 Identities = 346/510 (68%), Gaps = 12/510 (2%) Strand=Plus/Minus Query 21569 AAAATCGTGGCGGCCTACTTTGTCGAATGGGGAGTGTACCTGAGACAGTTCCCCGTCGAC 21628 ||| | |||| |||||||| || |||||||| || || | || | |||||||| || Sbjct 4132 AAAGTTGTGGGTGCCTACTTCGTAGAATGGGGTGTCTATCCTAGGAAATTCCCCGTGGAT 4073 Query 21629 AAGGTGCCGGCGCCGAATCTATCACATATACTATACGGCTTCGTGCCGATATGCGGAGGC 21688 | || || ||||| | ||| | || |||||||| | || || ||||| || Sbjct 4072 CGTATACCTATACCTAATCTTACTCATTTGCTCTACGGCTTTATTCCAATTTGCGGCGGT 4013 Query 21689 GACGGCATCAACGACGCGCTAAAAACGGTGCCTGGCAGTTTTGAGGCATTGCAACGTTCG 21748 |||||||| || || ||||| | | |||||||| | ||| | || || || Sbjct 4012 GACGGCATTAATGATAGTTTAAAAGAGATCGAAGGCAGTTTCCAAGCACTACAGCGATCC 3953 Query 21749 TGTGCGGGTCGGGCCGATTTCAAGGTGGCTATACACGATCCGTGGGCCGCAATACAAAAG 21808 ||| || || | || ||||| || | || |||||||| ||||| ||| ||||||| Sbjct 3952 TGTAGCGGCCGTGAGGACTTCAAAGTCTCAATCCACGATCCATGGGCAGCATTACAAAAA 3893 Query 21809 CCCCAAAAGGGCGTCTCGTCATGGAACGAACCGTACAAAGGCAACTTTGGTCAACTGATG 21868 || ||||| || | || ||||||||||| || ||||||||||||||||| ||| | ||| Sbjct 3892 CCACAAAAAGGATTGTCTTCATGGAACGAGCCCTACAAAGGCAACTTTGGCCAATTAATG 3833 Query 21869 GCAATGAAGAGGGCCAATCCTCACATTAAAG--TGTTCGCATCGATCGGCGGATGGACTC 21926 || | || ||| ||| | ||| ||| | ||| | || || || || ||||| | Sbjct 3832 TCACTAAAACAAGCCCGCCCTGA-ATTGAAGATTCTTC-CCTCTATTGGTGGGTGGACGC 3775 Query 21927 TGTCCGATCCATT----TTATCATATGCACGACGCCGACGTCAGACGGGTGTTTATCGAT 21982 | ||||||| || || | | || || | | | | ||| ||| | | Sbjct 3774 TTGCCGATCCTTTCTTCTTTTTAGTTG-ACAAATCTAAGAGAACACG---ATTTGTGCAG 3719 Query 21983 TCAGTTGAAGAATTTCTGCTCACGTGGAAGTTCTATGACGGCGTCCACATCGATTGGGAG 22042 ||||| | || ||||| || || ||||| |||| || || || | |||||||||||| Sbjct 3718 TCAGTAAAGGAGTTTCTTCTAACATGGAAATTCTTCGATGGTGTTGATATCGATTGGGAG 3659 Query 22043 TTTCCCGGCGGCAAGGGAGCCAACCCCGAC 22072 || || || ||||| || || ||||| ||| Sbjct 3658 TTCCCTGGTGGCAAAGGTGCTAACCCTGAC 3629 >seq28654 Length=3315 Score = 122 bits (134), Expect = 8e-23 Identities = 145/197 (74%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 118542 GTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCGAGCTGTTTTCCA 118601 ||||| |||||||| ||||| || || || |||||| |||||| | |||||| ||| Sbjct 594 GTAGATTCTTTTTGGATGTTATAGTCCGACAGAGTGCGGCCATCCTCTAACTGTTTACCA 653 Query 118602 GCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAATTTTTTGTTTA 118661 || ||||||||||||| || || || || ||||||||||||||| || || ||| Sbjct 654 GCAAAGATGAGACGCTGTTGGTCTGGGGGAATGCCCTCCTTGTCTTGGATCTTAGCCTTA 713 Query 118662 ACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTGCCGGTCAGAGTT 118721 || | ||||| ||||| | ||| ||||| | || | || || || || ||||| Sbjct 714 ACATTTTCGATAGTGTCGGATGGCTCCACCTCCAAAGTGATGGTCTTCCCAGTAAGAGTC 773 Query 118722 TTTACAAAAATCTGCAT 118738 || ||||| |||||||| Sbjct 774 TTAACAAAGATCTGCAT 790 Score = 107 bits (118), Expect = 2e-18 Identities = 154/212 (73%), Gaps = 4/212 (2%) Strand=Plus/Plus Query 118529 CACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTC 118588 ||| ||||| | || |||||||| ||||| |||||||| || |||||| ||| || Sbjct 1265 CACTAAGTGCAGGGTTGACTCTTTCTGAATATTGTAATCAGACAAAGTGCGACCATCTTC 1324 Query 118589 GAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGT-CTG 118647 | || |||||||| | ||||||||||| || || || || ||||||||||| | ||| Sbjct 1325 CAATTGCTTTCCAGCAAAAATGAGACGCTGTTGGTCTGGGGGGATGCCCTCCTTATCCTG 1384 Query 118648 TAATTTTTTGTTTAACCTGTTCGACGGTGTCCG-TGCTCTCGACCTCGACGGTCACCGTT 118706 | ||||| ||| || | |||| ||||| | || | || || || | ||| | || Sbjct 1385 T-ATTTTAGCTTTGACATTCTCGATTGTGTCAGATGGT-TCTACTTCCAGGGTAATGGTC 1442 Query 118707 TTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 || || |||| ||||| ||||| || ||||| Sbjct 1443 TTTCCAGTCAATGTTTTGACAAATATTTGCAT 1474 Score = 104 bits (114), Expect = 2e-17 Identities = 141/197 (72%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 118542 GTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCGAGCTGTTTTCCA 118601 |||||||| ||||| |||||||| || | ||||| ||| || | || || ||| Sbjct 1734 GTAGACTCCTTTTGGATGTTGTAGTCAGAGAGGGTGCGACCATCTTCCAATTGCTTACCA 1793 Query 118602 GCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAATTTTTTGTTTA 118661 || |||| |||||||||||||| || || |||||||| |||||| ||||| ||| Sbjct 1794 GCAAAGATAAGACGCTGCTGATCAGGTGGGATGCCCTCTTTGTCTTGGATTTTAGCTTTT 1853 Query 118662 ACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTGCCGGTCAGAGTT 118721 || | ||| | || || | | || || || | ||| | || || || || || ||| Sbjct 1854 ACATTTTCAATAGTATCAGAGGGTTCCACTTCCAGGGTAATGGTCTTTCCAGTTAGGGTT 1913 Query 118722 TTTACAAAAATCTGCAT 118738 || |||||||||||||| Sbjct 1914 TTAACAAAAATCTGCAT 1930 Score = 100 bits (110), Expect = 2e-16 Identities = 150/213 (70%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 118526 CAACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATC 118585 ||| |||||||| | ||||| ||||||||||| || || || | |||||| || Sbjct 2402 CAATACCAAGTGAAGAGTAGATTCTTTTTGAATATTATAGTCAGAAAGAGTGCGTCCGTC 2461 Query 118586 CTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTC 118645 || | || ||||||||| | || | ||| || ||||| ||||| ||||| |||||||| Sbjct 2462 TTCCAATTGCTTTCCAGCGAAAATCAAACGTTGTTGATCTGGAGGAATGCCTTCCTTGTC 2521 Query 118646 TGTAATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGT 118705 | |||||| ||| || | ||| | || || | || || || | || | || Sbjct 2522 TTGAATTTTGGCTTTTACATTTTCAATAGTATCGGAAGGTTCAACTTCCAAAGTAATGGT 2581 Query 118706 TTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 ||| || || || ||||| ||||| |||||||| Sbjct 2582 TTTACCCGTAAGTGTTTTCACAAAGATCTGCAT 2614 Score = 98.7 bits (108), Expect = 9e-16 Identities = 140/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 118542 GTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCGAGCTGTTTTCCA 118601 |||||||||||||| |||||||| || || ||||| ||| || ||||| || ||| Sbjct 1506 GTAGACTCTTTTTGGATGTTGTAGTCAGACAGGGTGCGACCATCTTCTAGCTGCTTGCCA 1565 Query 118602 GCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAATTTTTTGTTTA 118661 || |||| ||||| || ||||| || || || ||||| || ||| ||| || || Sbjct 1566 GCAAAGATAAGACGTTGTTGATCTGGGGGAATACCCTCTTTATCTTGAATCTTAGCCTTT 1625 Query 118662 ACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTGCCGGTCAGAGTT 118721 || | ||| | |||||| | ||| ||||| | || | || ||||| || || || Sbjct 1626 ACATTTTCAATGGTGTCAGATGGCTCCACCTCCAGAGTTATAGTCTTGCCTGTTAGTGTC 1685 Query 118722 TTTACAAAAATCTGCAT 118738 || ||||| || ||||| Sbjct 1686 TTGACAAATATTTGCAT 1702 Score = 96.9 bits (106), Expect = 3e-15 Identities = 161/230 (70%), Gaps = 2/230 (1%) Strand=Plus/Plus Query 118510 TACCTCCGCGTAATCTCAACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATC-G 118568 |||| || || | | ||| || || || | ||||| || |||||||| || ||||| | Sbjct 2158 TACCGCCACGAAGCCGCAATACTAAATGTAGGGTAGATTCCTTTTGAATATTATAATCAG 2217 Query 118569 CTCATAGTGCGCGTATCCTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGA 118628 | || || || ||| || || ||||||||||| | || || | ||| ||||| || Sbjct 2218 ATAAT-GTACGGCCATCTTCCAGTTGTTTTCCAGCAAAAATAAGCCTCTGTTGATCTGGG 2276 Query 118629 GGTATGCCCTCCTTGTCTGTAATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCG 118688 || || ||||| |||||| || ||| || || | ||||| ||||| | ||| Sbjct 2277 GGAATACCCTCTTTGTCTTGGATCTTTGCCTTCACATTTTCGATAGTGTCGGACGGCTCT 2336 Query 118689 ACCTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 ||||| | || | ||||| || || ||||| || ||||| |||||||| Sbjct 2337 ACCTCTAAAGTGATGGTTTTTCCTGTAAGAGTCTTAACAAAGATCTGCAT 2386 >seq27511 Length=800 Score = 104 bits (114), Expect = 2e-17 Identities = 153/214 (71%), Gaps = 2/214 (1%) Strand=Plus/Minus Query 118526 CAACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATC 118585 || ||||||||| | ||||| || || ||||| || ||||| || || || ||| Sbjct 429 CAGCACCAAGTGCAAAGTAGATTCCTTCTGAATATTATAATCTGACAATGTACGTCCATC 370 Query 118586 CTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTC 118645 || ||||||||||| || | || || | ||| || || ||||| ||||| || ||||| Sbjct 369 TTCCAGCTGTTTTCCTGCAAAAATAAGCCTCTGTTGGTCAGGAGGAATGCCTTCTTTGTC 310 Query 118646 TGTAATTTTTTGTTTAACCTGTTCGACGGTGTCCGT-GCTCTCGACCTCGACGGTCACCG 118704 | ||| ||| ||||| | ||| | || || | ||| || || || | || | | Sbjct 309 TTGAATCTTTGCCTTAACATTTTCTATTGTATCAGAAGCT-TCCACTTCCAAAGTGATAG 251 Query 118705 TTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 ||||||| ||||| || ||||||||||| ||||| Sbjct 250 TTTTGCCAGTCAGTGTCTTTACAAAAATTTGCAT 217 Score = 93.3 bits (102), Expect = 4e-14 Identities = 134/187 (72%), Gaps = 4/187 (2%) Strand=Plus/Minus Query 118542 GTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGT--ATCCTCGAGCTGTTTTC 118599 ||||| ||||| ||||||||||||| | |||||| |||| ||| || ||||| |||| Sbjct 185 GTAGATTCTTTCTGAATGTTGTAAT--CAGATAGTGTGCGTCCATCTTCAAGCTGCTTTC 128 Query 118600 CAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAATTTTTTGTT 118659 |||| | || || | |||||||| || || || ||||| || || ||||||| || Sbjct 127 CAGCAAAAATAAGTCTTTGCTGATCTGGGGGAATTCCCTCTTTATCCTGAATTTTTGCTT 68 Query 118660 TAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTGCCGGTCAGAG 118719 |||| | ||| | || || | ||| || || | || | || ||||| ||||| | Sbjct 67 TAACATTTTCAATTGTATCAGAAGGCTCAACTTCCAAAGTGATAGTCTTGCCAGTCAGTG 8 Query 118720 TTTTTAC 118726 | ||||| Sbjct 7 TCTTTAC 1 Score = 86.0 bits (94), Expect = 5e-12 Identities = 149/212 (70%), Gaps = 6/212 (3%) Strand=Plus/Minus Query 118530 ACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGT--ATCCT 118587 |||| ||| | || || || || ||||| ||||| || |||||| |||| ||| | Sbjct 653 ACCAGGTGCAAAGTTGATTCCTTCTGAATATTGTAGTCAG--ATAGTGTGCGTCCATCTT 596 Query 118588 CGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTG 118647 | ||||| |||||||| | || || | |||||||| || || || ||||| || || Sbjct 595 CAAGCTGCTTTCCAGCAAAAATAAGTCTTTGCTGATCTGGGGGAATACCCTCTTTATCCT 536 Query 118648 TAATTTTTTGTTTAACCTGTTCGACGGTGTCCGT-GCTCTCGACCTCGACGGTCACCGTT 118706 |||||| ||||| | ||| | || || | ||| || || || | || | || Sbjct 535 GAATTTTCGCCTTAACATTTTCAATTGTATCAGAAGCT-TCCACTTCCAAAGTGATAGTC 477 Query 118707 TTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 ||||| ||||| || ||||||||||| ||||| Sbjct 476 TTGCCAGTCAGTGTCTTTACAAAAATTTGCAT 445 >seq41046 Length=7774 Score = 100 bits (110), Expect = 2e-16 Identities = 161/230 (70%), Gaps = 1/230 (0%) Strand=Plus/Plus Query 118510 TACCTCCGCGTAATCTCAACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGC 118569 |||||||||| | || | ||| | || | ||| || || |||||||||||||| || Sbjct 7153 TACCTCCGCGAAGTCGAAGCACAAGATGCAATGTGGATTCCTTTTGAATGTTGTAGTCAG 7212 Query 118570 TCATAGTGCGCGTATCCTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAG 118629 || || || ||| || || ||||| ||||| |||| | ||| ||||| || || | Sbjct 7213 ACAATGTACGTCCATCTTCTAGTTGTTTACCAGCAAAGATCAAACGTTGCTGGTCTGGTG 7272 Query 118630 GTATGCCCTCCTTGTC-TGTAATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCG 118688 | || || ||||| || || | ||| |||||| | ||| | || || | | ||| Sbjct 7273 GAATACCTTCCTTATCTTGGATTTTAGCTTTTAACATTTTCTATAGTATCAGAGGCCTCC 7332 Query 118689 ACCTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 ||||||| ||| | ||||| || || || || || || ||||| ||||| Sbjct 7333 ACCTCGAGGGTAATGGTTTTACCCGTAAGGGTCTTGACGAAAATTTGCAT 7382 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 432365376837436