Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Heliconius_20pachinus_20[genbank_20GCA_5F900068735.1_202017-04-26] 277,083 sequences; 279,264,790 total letters Query= NC_002188.1 Length=288539 Score E Sequences producing significant alignments: (Bits) Value seq116274 102 1e-16 seq100037 100 5e-16 >seq116274 Length=581 Score = 102 bits (112), Expect = 1e-16 Identities = 118/154 (77%), Gaps = 4/154 (3%) Strand=Plus/Minus Query 135727 GGTATATGCGATAATTTACTGACGTCTATTGTAAGAGCCTGGGA-TACAAACAAACCACT 135785 |||||||| || |||||| |||| | || || |||| ||||| | | | || ||||| Sbjct 401 GGTATATGTGACAATTTATTGACATGTACAGTCCGAGCGTGGGACTTCTCA-AAGCCACT 343 Query 135786 CATTTTCTGTCCTGCAATGAATACTCTTATGTGGGAACATCCTATTACAGAAAAACATAT 135845 | ||||||||||||||||| ||| ||||||||||||||||||||| ||||| || Sbjct 342 TGTATTCTGTCCTGCAATGAACACTAGAATGTGGGAACATCCTATTACATCTAAACAAAT 283 Query 135846 AGATACGTTAAAATATATGGG-TTTCATAGAAAT 135878 |||| ||||| || ||| ||||| |||||| Sbjct 282 AGATGTTTTAAAGGATTGGGGCTTTCA-AGAAAT 250 >seq100037 Length=1801 Score = 100 bits (110), Expect = 5e-16 Identities = 106/140 (76%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 188846 CAAGTAGACGCTCATAATATAGTACCTTGTTGGGAAGCTTCTGATAAAGAAGAATACGGT 188905 || ||||| ||||| ||| | || || ||||||| |||||||||||| | ||||| Sbjct 277 CAGGTAGATGCTCACAATGTGGTGCCATGTTGGGTGGCTTCTGATAAACAGGAATATTCA 218 Query 188906 GCACGAACTTTAAGAAAAAAGATATTTGATAAATTATATGAATATATGACAGAATTTCCT 188965 ||| |||| ||||||| || || | ||||||| |||||||| | |||||||||||| Sbjct 217 GCAAGAACAATAAGAAATAAAATCAATTCTAAATTAGATGAATATCTTACAGAATTTCCT 158 Query 188966 GTTGTTCGTAAACATCCATA 188985 ||| ||||||||| || Sbjct 157 CCAGTTATTAAACATCCTTA 138 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 919999273263320