Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Heliconius_20pachinus_20[genbank_20GCA_5F900068735.1_202017-04-26]
277,083 sequences; 279,264,790 total letters
Query= NC_002331.1
Length=178733
Score E
Sequences producing significant alignments: (Bits) Value
seq10526 239 5e-58
seq28654 116 4e-21
seq193070 87.8 2e-12
seq27511 87.8 2e-12
seq8431 87.8 2e-12
seq76306 86.0 7e-12
seq12391 86.0 7e-12
seq135457 82.4 9e-11
>seq10526
Length=5062
Score = 239 bits (264), Expect = 5e-58
Identities = 645/984 (66%), Gaps = 27/984 (3%)
Strand=Plus/Minus
Query 96454 AAAGTGACGGGGGCTTATTTTGTAGAATGGGGCGTGTACGATCGTAAGTTTCCCGCGGAC 96513
||||| ||| || || || ||||||||||| || || | | || || |||| |||
Sbjct 4132 AAAGTTGTGGGTGCCTACTTCGTAGAATGGGGTGTCTATCCTAGGAAATTCCCCGTGGAT 4073
Query 96514 AAGGTGCCCATTCCCAATCTGACGCATCTATTGTACGGTTTTATACCCATTTGCGGAGGC 96573
| || || || ||||| || ||| | | ||||| ||||| || |||||||| ||
Sbjct 4072 CGTATACCTATACCTAATCTTACTCATTTGCTCTACGGCTTTATTCCAATTTGCGGCGGT 4013
Query 96574 GACGGTATCAACGACAGTCTAAAACAGGTACCCGGCTCTTTTGAGGCTTTACAAAAATCA 96633
||||| || || || ||| ||||| || | ||| ||| | || |||| |||
Sbjct 4012 GACGGCATTAATGATAGTTTAAAAGAGATCGAAGGCAGTTTCCAAGCACTACAGCGATCC 3953
Query 96634 TGTGCCGGCAGAGACGATTTCAAGGTTAGCATCCACGACATTTACGGTGCTCTACAAAAA 96693
||| |||| | || || ||||| || |||||||| | | || ||||||||
Sbjct 3952 TGTAGCGGCCGTGAGGACTTCAAAGTCTCAATCCACGATCCATGGGCAGCATTACAAAAA 3893
Query 96694 CCGCAAAAAGGTGTTTCCGAATACAATGAACCTTACCGTGGCAATTTTGGCCAGCTCATG 96753
|| |||||||| | || || || || || ||| ||||| |||||||| | |||
Sbjct 3892 CCACAAAAAGGATTGTCTTCATGGAACGAGCCCTACAAAGGCAACTTTGGCCAATTAATG 3833
Query 96754 GCTATTCGCAAACATAA-----CCCTCATTTAAAAATTTTGCCTAGCATCGGTGGTTGGA 96808
|| | || | || |||| | || || ||| | || || ||||| ||||
Sbjct 3832 -----TCACTAAAACAAGCCCGCCCTGAATTGAAGATTCTTCCCTCTATTGGTGGGTGGA 3778
Query 96809 CACTGAGCGACCCTTTCTATTTTTTCGCCGACGACTATAAACGAAAAGTATTTGTGGACT 96868
| || ||| ||||||| ||||| | ||| | | ||| ||| | ||||||| | |
Sbjct 3777 CGCTTGCCGATCCTTTCTTCTTTTTAGTTGACAAATCTAAGAGAACACGATTTGTGCAGT 3718
Query 96869 CGGTTCGTGAATTCTTGCAAGTGTGGAAGTTTTTCGATGGAGTAGACATCGACTGGGAGT 96928
| || || || | | | ||||| || |||||||| || || ||||| |||||||
Sbjct 3717 CAGTAAAGGAGTTTCTTCTAACATGGAAATTCTTCGATGGTGTTGATATCGATTGGGAGT 3658
Query 96929 TTCCCGGCGGAAAGGGTGCCAACCCCGACGTAGGCGATCCTAGCGTGGATGGAAACACAT 96988
| || || || || ||||| ||||| ||| | || | || | | ||||| | |
Sbjct 3657 TCCCTGGTGGCAAAGGTGCTAACCCTGACCTCGG-TAGCCCA--GAAGATGGTGATTGTT 3601
Query 96989 ATGTAACACTATTGAAAGAACTACGCCTAATGCTAGACAAACTGGGTG-------TGGTG 97041
|||||| | |||||||| |||| ||||| || | || || ||||
Sbjct 3600 ATGTAAGTTTGATGAAAGAATTACGTGAGATGCTCGATGAGCTCTCTGCTAAGAATGGT- 3542
Query 97042 AACAAACGCGTGTACGAGTTGACCAGCGCCGTGGGAGCAGGCTACGATAAAATAGACGTG 97101
|| ||| ||||| || || || | | || || | |||||||| | ||
Sbjct 3541 AAGAAA------TACGAATTAACTTCTGCTATTAGCGCTGGATGGGATAAAATCCAAGTT 3488
Query 97102 ATAGATTACTCTTCGGCTAGTCAATATTTGGATCATGTGTTTTTAATGAGTTACGACTTC 97161
| || || | |||| | ||| |||||||| | || || |||||||||||||||
Sbjct 3487 GTTGACTATGGTAAGGCTCAAAATTATATGGATCATATTTTCTTGATGAGTTACGACTTC 3428
Query 97162 AAAGGCGCATGGTCCAACACGGATTTGGGTCATCAAACACCATTGTACGCACCTTCGTGG 97221
|| || || ||||| || | | || |||||||| ||||||||||| ||| |||||
Sbjct 3427 AAGGGAGCCTGGTCAAATGATACTCTTGGACATCAAACGCCATTGTACGCGCCTGCGTGG 3368
Query 97222 AACCCTGACGACAAGTACACAACTGACTATGCCGTAAAAGAACTGCTCAAGCAAAAAGTA 97281
|| || | || | |||||| |||||| || |||||| | |||| ||| |||
Sbjct 3367 AATCCCAAGGAAACTTACACATCTGACTTTGGAGTAAAATACTTGCTGGCGCAGGGAGTG 3308
Query 97282 CCTTCCAACAAAATTGTAGTTGGAGTCGCCATGTACGGCAGAGGGTGGAGTGGTGTGCAC 97341
| | || || |||||||| || || || ||||| || | || |||| ||| || ||
Sbjct 3307 AATCCTAAGAAGATTGTAGTAGGTGTTGCTATGTATGGTCGTGGCTGGACTGGCGTTCAT 3248
Query 97342 GATTACAAGAACAATAACGTATTTACGGGCGTCGCCACAGGTCCGGTAAAAGGTACATGG 97401
|||||| | |||| | || || ||| ||| || || || || ||||| || |||
Sbjct 3247 GATTACGAAGACAACATTCCCTTCACAGGCAACGCTACTGGACCTGTCAAAGGAACTTGG 3188
Query 97402 GAAAACGGTGTCGTCGATTATAGG 97425
|| |||| || || || || |||
Sbjct 3187 CAAGACGGAGTGGTTGACTACAGG 3164
>seq28654
Length=3315
Score = 116 bits (128), Expect = 4e-21
Identities = 162/227 (71%), Gaps = 0/227 (0%)
Strand=Plus/Plus
Query 42957 CCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCC 43016
||||||| |||||| || ||||| ||||| ||| ||| || |||||||| || ||||
Sbjct 792 CCTCCTCGTAAACGTAATACCAAGTGCAAAGTGGACTCTTTCTGAATATTATAGTCAGAG 851
Query 43017 AGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGC 43076
||||| || | || || |||||||| |||||||| ||||| || || || || | ||
Sbjct 852 AGAGTACGGCCATCCTCCAGCTGCTTGCCAGCGAAAATGAGACGTTGTTGATCTGGGGGA 911
Query 43077 ACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGATTCCACA 43136
| | ||| ||||| ||| || ||| | | | | ||||| | ||| ||
Sbjct 912 ATACCCTCTTTGTCTTGGATCTTAGCTTTAACATTTTCAATAGTGTCTGAGGGTTCAACT 971
Query 43137 TCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 43183
|| | ||||| ||||| || || || |||||||||||||| |||||
Sbjct 972 TCTAATGTGATAGTTTTCCCTGTCAGTGTCTTTACAAAGATCTGCAT 1018
Score = 93.3 bits (102), Expect = 5e-14
Identities = 150/216 (69%), Gaps = 0/216 (0%)
Strand=Plus/Plus
Query 42968 ACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTC 43027
||| | ||| || |||| || ||| || |||||||||||||||| || ||| || |
Sbjct 1259 ACGAAGCACTAAGTGCAGGGTTGACTCTTTCTGAATATTGTAATCAGACAAAGTGCGACC 1318
Query 43028 GTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTT 43087
|| || | ||||| ||||| || ||||| ||||| ||||| | || | || ||||||
Sbjct 1319 ATCTTCCAATTGCTTTCCAGCAAAAATGAGACGCTGTTGGTCTGGGGGGATGCCCTCCTT 1378
Query 43088 GTCCATGATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCGACCGTGAT 43147
||| ||||| ||||| || | | ||||| | ||| || || | || ||
Sbjct 1379 ATCCTGTATTTTAGCTTTGACATTCTCGATTGTGTCAGATGGTTCTACTTCCAGGGTAAT 1438
Query 43148 GGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 43183
||| || || || | || || ||||| ||||||||
Sbjct 1439 GGTCTTTCCAGTCAATGTTTTGACAAATATTTGCAT 1474
Score = 87.8 bits (96), Expect = 2e-12
Identities = 153/220 (70%), Gaps = 2/220 (1%)
Strand=Plus/Plus
Query 42968 ACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTC 43027
|||||| ||||| || | || || ||||||||||| || |||| ||||| || |
Sbjct 2399 ACGCAATACCAAGTGAAGAGTAGATTCTTTTTGAATATTATAGTCAGAAAGAGTGCGTCC 2458
Query 43028 GTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTT 43087
||| || | ||||| |||||||| || | || || || || | || | || |||||
Sbjct 2459 GTCTTCCAATTGCTTTCCAGCGAAAATCAAACGTTGTTGATCTGGAGGAATGCCTTCCTT 2518
Query 43088 GTCCATGATTTTTTG-TTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCGACCGTGA 43146
|| | ||| |||| | ||| | | | | || ||| | ||| || || | || |
Sbjct 2519 GT-CTTGAATTTTGGCTTTTACATTTTCAATAGTATCGGAAGGTTCAACTTCCAAAGTAA 2577
Query 43147 TGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCATTTT 43186
||||||| ||||| || || || |||||||| ||||||||
Sbjct 2578 TGGTTTTACCCGTAAGTGTTTTCACAAAGATCTGCATTTT 2617
>seq193070
Length=305
Score = 87.8 bits (96), Expect = 2e-12
Identities = 56/61 (92%), Gaps = 0/61 (0%)
Strand=Plus/Plus
Query 60078 GAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTATACTACCGAGGA 60137
||||||||||| ||||||||||||||||||||| ||||| |||||||||||||||| ||
Sbjct 1 GAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTTACCACTATACTACCGAAGA 60
Query 60138 T 60138
|
Sbjct 61 T 61
>seq27511
Length=800
Score = 87.8 bits (96), Expect = 2e-12
Identities = 159/230 (69%), Gaps = 2/230 (1%)
Strand=Plus/Minus
Query 42956 TCCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGC 43015
||| || || | |||| |||||| ||||| || ||||| |||||||| ||||| |
Sbjct 444 TCCACCCCTAAGGCGCAGCACCAAGTGCAAAGTAGATTCCTTCTGAATATTATAATCTGA 385
Query 43016 CAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGG 43075
|| || || | || || ||||| || || || || || || | ||| ||||| | ||
Sbjct 384 CAATGTACGTCCATCTTCCAGCTGTTTTCCTGCAAAAATAAGCCTCTGTTGGTCAGGAGG 325
Query 43076 CACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCGCC-ACCGTGTCGCTCGATTCCA 43134
| || || ||||| ||| | |||| | | | | | | || || | |||||
Sbjct 324 AATGCCTTCTTTGTCT-TGAATCTTTGCCTTAACATTTTCTATTGTATCAGAAGCTTCCA 266
Query 43135 CATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCATT 43184
| || | ||||| |||||||| || || ||||||||||| |||||||||
Sbjct 265 CTTCCAAAGTGATAGTTTTGCCAGTCAGTGTCTTTACAAAAATTTGCATT 216
>seq8431
Length=8185
Score = 87.8 bits (96), Expect = 2e-12
Identities = 74/91 (81%), Gaps = 9/91 (10%)
Strand=Plus/Plus
Query 60057 AAAAATTTTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATAC 60116
|||| || |||| |||| ||||||||||||| |||||||||||||||||| |
Sbjct 7787 AAAAGATTCCTCCCCGGCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGG--------C 7838
Query 60117 TCACCACTATACTACCGAGGAT-TGAATATA 60146
| |||||||||||||||||||| ||| ||||
Sbjct 7839 TTACCACTATACTACCGAGGATATGATTATA 7869
>seq76306
Length=316
Score = 86.0 bits (94), Expect = 7e-12
Identities = 158/229 (69%), Gaps = 2/229 (1%)
Strand=Plus/Minus
Query 42956 TCCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGC 43015
||| || |||| |||||| || || ||||| || ||||| || ||||| || || |
Sbjct 284 TCCACCCCTTAGACGCAAAACTAAGTGCAAAGTAGATTCCTTCTGGATATTATAGTCTGA 225
Query 43016 CAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGG 43075
|| || ||| | || || || ||||| || ||||| || |||| || || || | ||
Sbjct 224 CAATGTGCGCCCATCTTCCAGTTGCTTTCCGGCGAAAATCAGTCTTTGTTGATCTGGAGG 165
Query 43076 CACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCGCC-ACCGTGTCGCTCGATTCCA 43134
| || |||||||| ||| | |||| | ||| | | || || | |||||
Sbjct 164 AATGCCTTCCTTGTCT-TGAATCTTTGCCTTTACGTTTTCGATTGTATCAGAAGCTTCCA 106
Query 43135 CATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 43183
| || | ||||||||||| || |||| || ||||| |||||||||||
Sbjct 105 CTTCCAATGTGATGGTTTTCCCAGTTAAAGTTTTTACGAAGATTTGCAT 57
>seq12391
Length=4147
Score = 86.0 bits (94), Expect = 7e-12
Identities = 67/80 (84%), Gaps = 0/80 (0%)
Strand=Plus/Minus
Query 60058 AAAATTTTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACT 60117
||||| |||| |||| |||||||||||| ||||||||||||||||||||| ||| |
Sbjct 281 AAAATAATCTCTCCGGCGGGGAATCGAACCTCGGTCTCCCGCGTGACAGGCGGGGATAAT 222
Query 60118 CACCACTATACTACCGAGGA 60137
|| ||||||||||||| ||
Sbjct 221 TACTACTATACTACCGAAGA 202
>seq135457
Length=5303
Score = 82.4 bits (90), Expect = 9e-11
Identities = 62/73 (85%), Gaps = 0/73 (0%)
Strand=Plus/Plus
Query 60065 TCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACT 60124
||||| |||| ||||||| ||| | |||||||||||||||| ||| ||||| | ||||
Sbjct 2979 TCTCCCCGGCGGGGAATCAAACTCCGGTCTCCCGCGTGACATGCGCGGATACTTATCACT 3038
Query 60125 ATACTACCGAGGA 60137
|||||||||||||
Sbjct 3039 ATACTACCGAGGA 3051
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 569837088299240
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |