Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Heliconius_20pachinus_20[genbank_20GCA_5F900068735.1_202017-04-26] 277,083 sequences; 279,264,790 total letters Query= NC_002331.1 Length=178733 Score E Sequences producing significant alignments: (Bits) Value seq10526 239 5e-58 seq28654 116 4e-21 seq193070 87.8 2e-12 seq27511 87.8 2e-12 seq8431 87.8 2e-12 seq76306 86.0 7e-12 seq12391 86.0 7e-12 seq135457 82.4 9e-11 >seq10526 Length=5062 Score = 239 bits (264), Expect = 5e-58 Identities = 645/984 (66%), Gaps = 27/984 (3%) Strand=Plus/Minus Query 96454 AAAGTGACGGGGGCTTATTTTGTAGAATGGGGCGTGTACGATCGTAAGTTTCCCGCGGAC 96513 ||||| ||| || || || ||||||||||| || || | | || || |||| ||| Sbjct 4132 AAAGTTGTGGGTGCCTACTTCGTAGAATGGGGTGTCTATCCTAGGAAATTCCCCGTGGAT 4073 Query 96514 AAGGTGCCCATTCCCAATCTGACGCATCTATTGTACGGTTTTATACCCATTTGCGGAGGC 96573 | || || || ||||| || ||| | | ||||| ||||| || |||||||| || Sbjct 4072 CGTATACCTATACCTAATCTTACTCATTTGCTCTACGGCTTTATTCCAATTTGCGGCGGT 4013 Query 96574 GACGGTATCAACGACAGTCTAAAACAGGTACCCGGCTCTTTTGAGGCTTTACAAAAATCA 96633 ||||| || || || ||| ||||| || | ||| ||| | || |||| ||| Sbjct 4012 GACGGCATTAATGATAGTTTAAAAGAGATCGAAGGCAGTTTCCAAGCACTACAGCGATCC 3953 Query 96634 TGTGCCGGCAGAGACGATTTCAAGGTTAGCATCCACGACATTTACGGTGCTCTACAAAAA 96693 ||| |||| | || || ||||| || |||||||| | | || |||||||| Sbjct 3952 TGTAGCGGCCGTGAGGACTTCAAAGTCTCAATCCACGATCCATGGGCAGCATTACAAAAA 3893 Query 96694 CCGCAAAAAGGTGTTTCCGAATACAATGAACCTTACCGTGGCAATTTTGGCCAGCTCATG 96753 || |||||||| | || || || || || ||| ||||| |||||||| | ||| Sbjct 3892 CCACAAAAAGGATTGTCTTCATGGAACGAGCCCTACAAAGGCAACTTTGGCCAATTAATG 3833 Query 96754 GCTATTCGCAAACATAA-----CCCTCATTTAAAAATTTTGCCTAGCATCGGTGGTTGGA 96808 || | || | || |||| | || || ||| | || || ||||| |||| Sbjct 3832 -----TCACTAAAACAAGCCCGCCCTGAATTGAAGATTCTTCCCTCTATTGGTGGGTGGA 3778 Query 96809 CACTGAGCGACCCTTTCTATTTTTTCGCCGACGACTATAAACGAAAAGTATTTGTGGACT 96868 | || ||| ||||||| ||||| | ||| | | ||| ||| | ||||||| | | Sbjct 3777 CGCTTGCCGATCCTTTCTTCTTTTTAGTTGACAAATCTAAGAGAACACGATTTGTGCAGT 3718 Query 96869 CGGTTCGTGAATTCTTGCAAGTGTGGAAGTTTTTCGATGGAGTAGACATCGACTGGGAGT 96928 | || || || | | | ||||| || |||||||| || || ||||| ||||||| Sbjct 3717 CAGTAAAGGAGTTTCTTCTAACATGGAAATTCTTCGATGGTGTTGATATCGATTGGGAGT 3658 Query 96929 TTCCCGGCGGAAAGGGTGCCAACCCCGACGTAGGCGATCCTAGCGTGGATGGAAACACAT 96988 | || || || || ||||| ||||| ||| | || | || | | ||||| | | Sbjct 3657 TCCCTGGTGGCAAAGGTGCTAACCCTGACCTCGG-TAGCCCA--GAAGATGGTGATTGTT 3601 Query 96989 ATGTAACACTATTGAAAGAACTACGCCTAATGCTAGACAAACTGGGTG-------TGGTG 97041 |||||| | |||||||| |||| ||||| || | || || |||| Sbjct 3600 ATGTAAGTTTGATGAAAGAATTACGTGAGATGCTCGATGAGCTCTCTGCTAAGAATGGT- 3542 Query 97042 AACAAACGCGTGTACGAGTTGACCAGCGCCGTGGGAGCAGGCTACGATAAAATAGACGTG 97101 || ||| ||||| || || || | | || || | |||||||| | || Sbjct 3541 AAGAAA------TACGAATTAACTTCTGCTATTAGCGCTGGATGGGATAAAATCCAAGTT 3488 Query 97102 ATAGATTACTCTTCGGCTAGTCAATATTTGGATCATGTGTTTTTAATGAGTTACGACTTC 97161 | || || | |||| | ||| |||||||| | || || ||||||||||||||| Sbjct 3487 GTTGACTATGGTAAGGCTCAAAATTATATGGATCATATTTTCTTGATGAGTTACGACTTC 3428 Query 97162 AAAGGCGCATGGTCCAACACGGATTTGGGTCATCAAACACCATTGTACGCACCTTCGTGG 97221 || || || ||||| || | | || |||||||| ||||||||||| ||| ||||| Sbjct 3427 AAGGGAGCCTGGTCAAATGATACTCTTGGACATCAAACGCCATTGTACGCGCCTGCGTGG 3368 Query 97222 AACCCTGACGACAAGTACACAACTGACTATGCCGTAAAAGAACTGCTCAAGCAAAAAGTA 97281 || || | || | |||||| |||||| || |||||| | |||| ||| ||| Sbjct 3367 AATCCCAAGGAAACTTACACATCTGACTTTGGAGTAAAATACTTGCTGGCGCAGGGAGTG 3308 Query 97282 CCTTCCAACAAAATTGTAGTTGGAGTCGCCATGTACGGCAGAGGGTGGAGTGGTGTGCAC 97341 | | || || |||||||| || || || ||||| || | || |||| ||| || || Sbjct 3307 AATCCTAAGAAGATTGTAGTAGGTGTTGCTATGTATGGTCGTGGCTGGACTGGCGTTCAT 3248 Query 97342 GATTACAAGAACAATAACGTATTTACGGGCGTCGCCACAGGTCCGGTAAAAGGTACATGG 97401 |||||| | |||| | || || ||| ||| || || || || ||||| || ||| Sbjct 3247 GATTACGAAGACAACATTCCCTTCACAGGCAACGCTACTGGACCTGTCAAAGGAACTTGG 3188 Query 97402 GAAAACGGTGTCGTCGATTATAGG 97425 || |||| || || || || ||| Sbjct 3187 CAAGACGGAGTGGTTGACTACAGG 3164 >seq28654 Length=3315 Score = 116 bits (128), Expect = 4e-21 Identities = 162/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 42957 CCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCC 43016 ||||||| |||||| || ||||| ||||| ||| ||| || |||||||| || |||| Sbjct 792 CCTCCTCGTAAACGTAATACCAAGTGCAAAGTGGACTCTTTCTGAATATTATAGTCAGAG 851 Query 43017 AGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGC 43076 ||||| || | || || |||||||| |||||||| ||||| || || || || | || Sbjct 852 AGAGTACGGCCATCCTCCAGCTGCTTGCCAGCGAAAATGAGACGTTGTTGATCTGGGGGA 911 Query 43077 ACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGATTCCACA 43136 | | ||| ||||| ||| || ||| | | | | ||||| | ||| || Sbjct 912 ATACCCTCTTTGTCTTGGATCTTAGCTTTAACATTTTCAATAGTGTCTGAGGGTTCAACT 971 Query 43137 TCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 43183 || | ||||| ||||| || || || |||||||||||||| ||||| Sbjct 972 TCTAATGTGATAGTTTTCCCTGTCAGTGTCTTTACAAAGATCTGCAT 1018 Score = 93.3 bits (102), Expect = 5e-14 Identities = 150/216 (69%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 42968 ACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTC 43027 ||| | ||| || |||| || ||| || |||||||||||||||| || ||| || | Sbjct 1259 ACGAAGCACTAAGTGCAGGGTTGACTCTTTCTGAATATTGTAATCAGACAAAGTGCGACC 1318 Query 43028 GTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTT 43087 || || | ||||| ||||| || ||||| ||||| ||||| | || | || |||||| Sbjct 1319 ATCTTCCAATTGCTTTCCAGCAAAAATGAGACGCTGTTGGTCTGGGGGGATGCCCTCCTT 1378 Query 43088 GTCCATGATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCGACCGTGAT 43147 ||| ||||| ||||| || | | ||||| | ||| || || | || || Sbjct 1379 ATCCTGTATTTTAGCTTTGACATTCTCGATTGTGTCAGATGGTTCTACTTCCAGGGTAAT 1438 Query 43148 GGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 43183 ||| || || || | || || ||||| |||||||| Sbjct 1439 GGTCTTTCCAGTCAATGTTTTGACAAATATTTGCAT 1474 Score = 87.8 bits (96), Expect = 2e-12 Identities = 153/220 (70%), Gaps = 2/220 (1%) Strand=Plus/Plus Query 42968 ACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTC 43027 |||||| ||||| || | || || ||||||||||| || |||| ||||| || | Sbjct 2399 ACGCAATACCAAGTGAAGAGTAGATTCTTTTTGAATATTATAGTCAGAAAGAGTGCGTCC 2458 Query 43028 GTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTT 43087 ||| || | ||||| |||||||| || | || || || || | || | || ||||| Sbjct 2459 GTCTTCCAATTGCTTTCCAGCGAAAATCAAACGTTGTTGATCTGGAGGAATGCCTTCCTT 2518 Query 43088 GTCCATGATTTTTTG-TTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCGACCGTGA 43146 || | ||| |||| | ||| | | | | || ||| | ||| || || | || | Sbjct 2519 GT-CTTGAATTTTGGCTTTTACATTTTCAATAGTATCGGAAGGTTCAACTTCCAAAGTAA 2577 Query 43147 TGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCATTTT 43186 ||||||| ||||| || || || |||||||| |||||||| Sbjct 2578 TGGTTTTACCCGTAAGTGTTTTCACAAAGATCTGCATTTT 2617 >seq193070 Length=305 Score = 87.8 bits (96), Expect = 2e-12 Identities = 56/61 (92%), Gaps = 0/61 (0%) Strand=Plus/Plus Query 60078 GAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTATACTACCGAGGA 60137 ||||||||||| ||||||||||||||||||||| ||||| |||||||||||||||| || Sbjct 1 GAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTTACCACTATACTACCGAAGA 60 Query 60138 T 60138 | Sbjct 61 T 61 >seq27511 Length=800 Score = 87.8 bits (96), Expect = 2e-12 Identities = 159/230 (69%), Gaps = 2/230 (1%) Strand=Plus/Minus Query 42956 TCCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGC 43015 ||| || || | |||| |||||| ||||| || ||||| |||||||| ||||| | Sbjct 444 TCCACCCCTAAGGCGCAGCACCAAGTGCAAAGTAGATTCCTTCTGAATATTATAATCTGA 385 Query 43016 CAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGG 43075 || || || | || || ||||| || || || || || || | ||| ||||| | || Sbjct 384 CAATGTACGTCCATCTTCCAGCTGTTTTCCTGCAAAAATAAGCCTCTGTTGGTCAGGAGG 325 Query 43076 CACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCGCC-ACCGTGTCGCTCGATTCCA 43134 | || || ||||| ||| | |||| | | | | | | || || | ||||| Sbjct 324 AATGCCTTCTTTGTCT-TGAATCTTTGCCTTAACATTTTCTATTGTATCAGAAGCTTCCA 266 Query 43135 CATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCATT 43184 | || | ||||| |||||||| || || ||||||||||| ||||||||| Sbjct 265 CTTCCAAAGTGATAGTTTTGCCAGTCAGTGTCTTTACAAAAATTTGCATT 216 >seq8431 Length=8185 Score = 87.8 bits (96), Expect = 2e-12 Identities = 74/91 (81%), Gaps = 9/91 (10%) Strand=Plus/Plus Query 60057 AAAAATTTTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATAC 60116 |||| || |||| |||| ||||||||||||| |||||||||||||||||| | Sbjct 7787 AAAAGATTCCTCCCCGGCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGG--------C 7838 Query 60117 TCACCACTATACTACCGAGGAT-TGAATATA 60146 | |||||||||||||||||||| ||| |||| Sbjct 7839 TTACCACTATACTACCGAGGATATGATTATA 7869 >seq76306 Length=316 Score = 86.0 bits (94), Expect = 7e-12 Identities = 158/229 (69%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 42956 TCCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGC 43015 ||| || |||| |||||| || || ||||| || ||||| || ||||| || || | Sbjct 284 TCCACCCCTTAGACGCAAAACTAAGTGCAAAGTAGATTCCTTCTGGATATTATAGTCTGA 225 Query 43016 CAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGG 43075 || || ||| | || || || ||||| || ||||| || |||| || || || | || Sbjct 224 CAATGTGCGCCCATCTTCCAGTTGCTTTCCGGCGAAAATCAGTCTTTGTTGATCTGGAGG 165 Query 43076 CACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCGCC-ACCGTGTCGCTCGATTCCA 43134 | || |||||||| ||| | |||| | ||| | | || || | ||||| Sbjct 164 AATGCCTTCCTTGTCT-TGAATCTTTGCCTTTACGTTTTCGATTGTATCAGAAGCTTCCA 106 Query 43135 CATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 43183 | || | ||||||||||| || |||| || ||||| ||||||||||| Sbjct 105 CTTCCAATGTGATGGTTTTCCCAGTTAAAGTTTTTACGAAGATTTGCAT 57 >seq12391 Length=4147 Score = 86.0 bits (94), Expect = 7e-12 Identities = 67/80 (84%), Gaps = 0/80 (0%) Strand=Plus/Minus Query 60058 AAAATTTTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACT 60117 ||||| |||| |||| |||||||||||| ||||||||||||||||||||| ||| | Sbjct 281 AAAATAATCTCTCCGGCGGGGAATCGAACCTCGGTCTCCCGCGTGACAGGCGGGGATAAT 222 Query 60118 CACCACTATACTACCGAGGA 60137 || ||||||||||||| || Sbjct 221 TACTACTATACTACCGAAGA 202 >seq135457 Length=5303 Score = 82.4 bits (90), Expect = 9e-11 Identities = 62/73 (85%), Gaps = 0/73 (0%) Strand=Plus/Plus Query 60065 TCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACT 60124 ||||| |||| ||||||| ||| | |||||||||||||||| ||| ||||| | |||| Sbjct 2979 TCTCCCCGGCGGGGAATCAAACTCCGGTCTCCCGCGTGACATGCGCGGATACTTATCACT 3038 Query 60125 ATACTACCGAGGA 60137 ||||||||||||| Sbjct 3039 ATACTACCGAGGA 3051 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 569837088299240