Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Heliconius_20pachinus_20[genbank_20GCA_5F900068735.1_202017-04-26] 277,083 sequences; 279,264,790 total letters Query= NC_002520.1 Length=232392 Score E Sequences producing significant alignments: (Bits) Value seq157993 123 4e-23 seq28654 120 5e-22 seq76306 111 2e-19 seq27512 107 3e-18 seq27511 107 3e-18 seq100037 86.0 9e-12 >seq157993 Length=1288 Score = 123 bits (136), Expect = 4e-23 Identities = 140/188 (74%), Gaps = 0/188 (0%) Strand=Plus/Plus Query 10506 GTAATTGACGAAGATTATAGAGGAAATGTGGGAGTAATATTATTTAATCATTCTAATGAA 10565 || || || ||||| || | ||||| | ||||| | ||||| |||||||| | |||| Sbjct 1 GTCATAGATGAAGACTACCGTGGAAACATTGGAGTGGTGTTATTCAATCATTCCAGTGAA 60 Query 10566 GATTTTATAATAAATAGAGGAGATAGAATATCTCAATTAATATGTGAAAAAATTTTATAT 10625 |||||| | | || | ||| |||||||| ||||| |||||||||||| |||||| || Sbjct 61 GATTTTGCAGTTAAAAAAGGTGATAGAATTGCTCAACTAATATGTGAAAGAATTTTCTAC 120 Query 10626 CCTAAAATGTTAAAAGTCGATAGTTTATCAGAAACAAAAAGATCTGATTTTGGTTTTGGA 10685 || | || | |||| || | | ||||||||||||||||| || ||||||||| Sbjct 121 CCAGATATAGTTGAAGTTGACAATCTATCAGAAACAAAAAGAGGGGAAGGTGGTTTTGGG 180 Query 10686 TCTACTGG 10693 ||||| || Sbjct 181 TCTACAGG 188 >seq28654 Length=3315 Score = 120 bits (132), Expect = 5e-22 Identities = 161/232 (69%), Gaps = 0/232 (0%) Strand=Plus/Plus Query 146049 TTCCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTG 146108 ||||||| | ||| | |||||||| || | |||||||||||| |||||||| || | Sbjct 2386 TTCCACCACGAAGACGCAATACCAAGTGAAGAGTAGATTCTTTTTGAATATTATAGTCAG 2445 Query 146109 AAAGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAG 146168 ||||||| | | || || ||||| |||||||| |||||||| | ||| ||||| |||| Sbjct 2446 AAAGAGTGCGTCCGTCTTCCAATTGCTTTCCAGCGAAAATCAAACGTTGTTGATCTGGAG 2505 Query 146169 GAATTCCTTCTTTATCTTGNNNNNNNNNNNNNNNNNNNNNNNNAGTATCTGAACTTTCTA 146228 |||| ||||| || ||||| |||||| ||| ||| | Sbjct 2506 GAATGCCTTCCTTGTCTTGAATTTTGGCTTTTACATTTTCAATAGTATCGGAAGGTTCAA 2565 Query 146229 CTTCTAGTGTGATTGTTTTACCTGTTAATGTTTTAATGAATATTTGCATTTT 146280 |||| | || || |||||||| || | |||||| | || || |||||||| Sbjct 2566 CTTCCAAAGTAATGGTTTTACCCGTAAGTGTTTTCACAAAGATCTGCATTTT 2617 Score = 98.7 bits (108), Expect = 1e-15 Identities = 153/227 (67%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 146051 CCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTGAA 146110 |||||||| | | | ||| || || |||||||||||||| || || || || || Sbjct 1932 CCACCTCTTAAACGAAGTACTAAGTGCAAAGTAGATTCTTTTTGGATGTTGTAGTCAGAC 1991 Query 146111 AGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGGA 146170 || || | | ||| |||||||| || || |||||||| | | ||| |||||||||||| Sbjct 1992 AGTGTACGACCATCTTCTAATTGCTTGCCCGCAAAAATAAGACGTTGTTGATCCGGAGGA 2051 Query 146171 ATTCCTTCTTTATCTTGNNNNNNNNNNNNNNNNNNNNNNNNAGTATCTGAACTTTCTACT 146230 || |||||||| ||||| || || ||| ||| ||| Sbjct 2052 ATGCCTTCTTTGTCTTGGATTTTAGCTTTCACATTTTCAATTGTGTCAGAAGCTTCAACT 2111 Query 146231 TCTAGTGTGATTGTTTTACCTGTTAATGTTTTAATGAATATTTGCAT 146277 |||| || |||||||| || || | |||||||| || |||||||| Sbjct 2112 TCTAAAGTAATTGTTTTTCCAGTGAGTGTTTTAACAAAGATTTGCAT 2158 Score = 98.7 bits (108), Expect = 1e-15 Identities = 97/123 (79%), Gaps = 2/123 (2%) Strand=Plus/Plus Query 146066 AATACCAAATGTAAAGTAGATTC-TTTAGATATATTATAATCTGAAAGAGTTCTGCTATC 146124 ||||| ||||||| |||||||| ||| || ||||||||||| || | || | || ||| Sbjct 2175 AATACTAAATGTAGGGTAGATTCCTTTTGA-ATATTATAATCAGATAATGTACGGCCATC 2233 Query 146125 ATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGGAATTCCTTCTTTATC 146184 || | |||||||||||||||||| | || || ||||| || ||||| || ||||| || Sbjct 2234 TTCCAGTTGTTTTCCAGCAAAAATAAGCCTCTGTTGATCTGGGGGAATACCCTCTTTGTC 2293 Query 146185 TTG 146187 ||| Sbjct 2294 TTG 2296 Score = 86.0 bits (94), Expect = 9e-12 Identities = 101/137 (74%), Gaps = 0/137 (0%) Strand=Plus/Plus Query 146051 CCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTGAA 146110 ||||| | ||| | | ||| ||||| |||||||||||||| || ||||| || || Sbjct 564 CCACCACGAAGACGAAGTACTAAATGCAAAGTAGATTCTTTTTGGATGTTATAGTCCGAC 623 Query 146111 AGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGGA 146170 ||||| | || ||| ||||| ||||| |||||||| || | | || || || || ||| Sbjct 624 AGAGTGCGGCCATCCTCTAACTGTTTACCAGCAAAGATGAGACGCTGTTGGTCTGGGGGA 683 Query 146171 ATTCCTTCTTTATCTTG 146187 || || || || ||||| Sbjct 684 ATGCCCTCCTTGTCTTG 700 >seq76306 Length=316 Score = 111 bits (122), Expect = 2e-19 Identities = 157/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 146049 TTCCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTG 146108 ||||||| || || | || || || || ||||||||||| || |||||||| |||| Sbjct 285 TTCCACCCCTTAGACGCAAAACTAAGTGCAAAGTAGATTCCTTCTGGATATTATAGTCTG 226 Query 146109 AAAGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAG 146168 | | || | | ||| || | ||| ||||| || ||||||| |||||| ||||| |||| Sbjct 225 ACAATGTGCGCCCATCTTCCAGTTGCTTTCCGGCGAAAATCAGTCTTTGTTGATCTGGAG 166 Query 146169 GAATTCCTTCTTTATCTTGNNNNNNNNNNNNNNNNNNNNNNNNAGTATCTGAACTTTCTA 146228 |||| ||||| || ||||| ||||| ||| ||| | Sbjct 165 GAATGCCTTCCTTGTCTTGAATCTTTGCCTTTACGTTTTCGATTGTATCAGAAGCTTCCA 106 Query 146229 CTTCTAGTGTGATTGTTTTACCTGTTAATGTTTTAATGAATATTTGCAT 146277 |||| | |||||| ||||| || ||||| ||||| | ||| |||||||| Sbjct 105 CTTCCAATGTGATGGTTTTCCCAGTTAAAGTTTTTACGAAGATTTGCAT 57 >seq27512 Length=242 Score = 107 bits (118), Expect = 3e-18 Identities = 106/137 (77%), Gaps = 0/137 (0%) Strand=Plus/Plus Query 146051 CCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTGAA 146110 |||||||| || | | ||| |||||||||||||||||||| ||||| || ||||| Sbjct 1 CCACCTCTCAGACGAAGTACTAAATGTAAAGTAGATTCTTTCTGAATATTGTAGTCTGAT 60 Query 146111 AGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGGA 146170 || || | | ||| || | || |||||||||||||| | ||||| || || |||||| Sbjct 61 AGTGTACGTCCATCCTCAAGCTGCTTTCCAGCAAAAATAAGCCTTTGTTGGTCTGGAGGA 120 Query 146171 ATTCCTTCTTTATCTTG 146187 || ||||| |||||||| Sbjct 121 ATGCCTTCCTTATCTTG 137 >seq27511 Length=800 Score = 107 bits (118), Expect = 3e-18 Identities = 107/139 (77%), Gaps = 0/139 (0%) Strand=Plus/Minus Query 146049 TTCCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTG 146108 |||||||||| || | || ||| | || |||||||||||||| || || ||||| | Sbjct 217 TTCCACCTCTCAGCCGTAGTACTAGGTGCAAAGTAGATTCTTTCTGAATGTTGTAATCAG 158 Query 146109 AAAGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAG 146168 | || || | | ||| || | || |||||||||||||| | |||||||||||| || | Sbjct 157 ATAGTGTGCGTCCATCTTCAAGCTGCTTTCCAGCAAAAATAAGTCTTTGCTGATCTGGGG 98 Query 146169 GAATTCCTTCTTTATCTTG 146187 ||||||| |||||||| || Sbjct 97 GAATTCCCTCTTTATCCTG 79 Score = 98.7 bits (108), Expect = 1e-15 Identities = 105/139 (76%), Gaps = 0/139 (0%) Strand=Plus/Minus Query 146049 TTCCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTG 146108 ||||||| ||||| | | ||||| || ||||||||||| || ||||||||||||| Sbjct 445 TTCCACCCCTAAGGCGCAGCACCAAGTGCAAAGTAGATTCCTTCTGAATATTATAATCTG 386 Query 146109 AAAGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAG 146168 | | || | | ||| || | |||||||| |||||||| | || || || || |||| Sbjct 385 ACAATGTACGTCCATCTTCCAGCTGTTTTCCTGCAAAAATAAGCCTCTGTTGGTCAGGAG 326 Query 146169 GAATTCCTTCTTTATCTTG 146187 |||| |||||||| ||||| Sbjct 325 GAATGCCTTCTTTGTCTTG 307 Score = 93.3 bits (102), Expect = 6e-14 Identities = 104/139 (75%), Gaps = 0/139 (0%) Strand=Plus/Minus Query 146049 TTCCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTG 146108 |||||||||| || | | ||||| || ||||| ||||| || ||||| || || | Sbjct 673 TTCCACCTCTCAGCCGCAGTACCAGGTGCAAAGTTGATTCCTTCTGAATATTGTAGTCAG 614 Query 146109 AAAGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAG 146168 | || || | | ||| || | || |||||||||||||| | |||||||||||| || | Sbjct 613 ATAGTGTGCGTCCATCTTCAAGCTGCTTTCCAGCAAAAATAAGTCTTTGCTGATCTGGGG 554 Query 146169 GAATTCCTTCTTTATCTTG 146187 |||| || |||||||| || Sbjct 553 GAATACCCTCTTTATCCTG 535 >seq100037 Length=1801 Score = 86.0 bits (94), Expect = 9e-12 Identities = 96/127 (76%), Gaps = 6/127 (5%) Strand=Plus/Minus Query 27418 GTAGATTCTCATAATATTATACCAGTATGGGTAACTTCAGATAAACAGGAATATAACGCA 27477 |||||| |||| ||| | | ||| ||||| |||| ||||||||||||||| ||| Sbjct 274 GTAGATGCTCACAATGTGGTGCCATGTTGGGTGGCTTCTGATAAACAGGAATATTCAGCA 215 Query 27478 AGAACAATAAGGATTAAAATAAA---TAAATTAAAAGATCAATATTTAATCGAATTTCCT 27534 ||||||||||| | |||||| || |||||| |||| ||||| | | ||||||||| Sbjct 214 AGAACAATAAGAAATAAAATCAATTCTAAATT---AGATGAATATCTTACAGAATTTCCT 158 Query 27535 AAAGTTA 27541 ||||| Sbjct 157 CCAGTTA 151 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 740951168431360