Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Heliconius_20pachinus_20[genbank_20GCA_5F900068735.1_202017-04-26]
277,083 sequences; 279,264,790 total letters
Query= NC_002816.1
Length=123500
Score E
Sequences producing significant alignments: (Bits) Value
seq15523 199 3e-46
seq10526 104 2e-17
seq27511 89.7 4e-13
>seq15523
Length=5906
Score = 199 bits (220), Expect = 3e-46
Identities = 181/228 (79%), Gaps = 0/228 (0%)
Strand=Plus/Minus
Query 13216 ACTGGCCCCGTTGTATGAAGCAGAGACCCGAGCAGATGGCGGATGCCGGTTTCTTCTACA 13275
||||||| || |||||||||||| || ||| | | || || || || ||||||||||
Sbjct 5823 ACTGGCCTCGCAGTATGAAGCAGAAGCCTGAGGAACTCGCCGAAGCGGGATTCTTCTACA 5764
Query 13276 CTGGCTACGGTGACAATACAAAGTGCTTCTATTGTGACGGCGGATTGAAAGATTGGGAGC 13335
| ||| | |||||||| || ||||||||||| |||||||||||| | || || ||||||
Sbjct 5763 CCGGCCAGGGTGACAAAACTAAGTGCTTCTACTGTGACGGCGGACTCAAGGACTGGGAGA 5704
Query 13336 CGGAAGATGTACCTTGGGAACAGCATGTAAGATGGTTCGACCGTTGCGCCTACGTTCAGC 13395
|| || || || ||||| ||||| | | | ||||||||||| ||||||||||| ||||
Sbjct 5703 ACGACGACGTGCCGTGGGAGCAGCACGCACGCTGGTTCGACCGGTGCGCCTACGTGCAGC 5644
Query 13396 TAGTCAAGGGTAGAGACTACGTACAGAAAGTCATCACGGAAGCCTGCG 13443
| ||||| || |||| ||||| ||||| || ||||||||||| ||||
Sbjct 5643 TGGTCAAAGGCCGAGAGTACGTCCAGAAGGTGATCACGGAAGCGTGCG 5596
>seq10526
Length=5062
Score = 104 bits (114), Expect = 2e-17
Identities = 326/500 (65%), Gaps = 10/500 (2%)
Strand=Plus/Plus
Query 6850 GTTCGCTCCCTTTCCTCCCGGAAACTCCCAGTCAATATCCACTCCGTCGAAAAACTTCCA 6909
||| || || || || || || |||||||| || ||||| || || ||||| || |||||
Sbjct 3635 GTTAGCACCTTTGCCACCAGGGAACTCCCAATCGATATCAACACCATCGAAGAATTTCCA 3694
Query 6910 CGTCTCCAGAAACTCGCGCACGCTCTGCACAAACACCCGACGCTTGGCGGAGTCGTGCAT 6969
|| |||||||| || ||||||||| | ||| | | | || ||
Sbjct 3695 TGTTAGAAGAAACTCCTTTACTGACTGCACAAATCGTGTTCTCTTAG---ATTTGT-CAA 3750
Query 6970 CTT----GTAGAAGGGGTCGCTAAGCGTCCACCCGCCTATGGAGGGTAGTATAGTCAGAT 7025
|| | |||| || ||| |||||||||||| || || ||||| || || ||| |
Sbjct 3751 CTAAAAAGAAGAAAGGATCGGCAAGCGTCCACCCACCAATAGAGGGAAGAATCTTCAATT 3810
Query 7026 TGGGGTTGTGGTGTTTGATGGCCATCAGCTGGCCAAAATTACCCTTATACGGCTCGTCGT 7085
||| | ||||| | | ||| | |||||||| || || || || |||||||
Sbjct 3811 CAGGGCGGGCTTGTTTTAGTGACATTAATTGGCCAAAGTTGCCTTTGTAGGGCTCGTTCC 3870
Query 7086 ACGCCTCCACACCCTTTTGTGGTTTCTGTACGGCGCCCCACAAATCGTGTATACTCACTT 7145
| | || || ||||||||||| |||| || |||| |||||| || ||||
Sbjct 3871 ATGAAGACAATCCTTTTTGTGGTTTTTGTAATGCTGCCCATGGATCGTGGATTGAGACTT 3930
Query 7146 TGAAATCGTCTCGGCCCGCGCACGATCTTTGCAACGCTT-CAAACGACCCCGGCACCTGT 7204
|||| || || ||||| || |||| || | |||| |||| || | | || |
Sbjct 3931 TGAAGTCCTCACGGCCGCTACAGGATCGCTGTAGTGCTTGGAAACTGCCTTCG-ATCTCT 3989
Query 7205 TTCAAGGCGTCGTTGAGTCCGTCTCCCCCGCAAATGGGCACAAATCCGTACAGCAAATGG 7264
|| || || || | ||||| || |||||||| || | ||| ||||| ||||||||
Sbjct 3990 TTTAAACTATCATTAATGCCGTCACCGCCGCAAATTGGAATAAAGCCGTAGAGCAAATGA 4049
Query 7265 CTGAGATTGGGCACGGGCACCTTGTCTGCGGGAAACTGCCGTCCGTACACACCCCACTCC 7324
| ||||| || | || | || |||| || | || || |||||||| ||
Sbjct 4050 GTAAGATTAGGTATAGGTATACGATCCACGGGGAATTTCCTAGGATAGACACCCCATTCT 4109
Query 7325 ACAAAGTACGCCGCCACCAC 7344
|| ||||| || |||| ||
Sbjct 4110 ACGAAGTAGGCACCCACAAC 4129
>seq27511
Length=800
Score = 89.7 bits (98), Expect = 4e-13
Identities = 145/209 (69%), Gaps = 0/209 (0%)
Strand=Plus/Minus
Query 45128 ACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCC 45187
|||||||||| || ||||||||||| || || || || | || | || |||
Sbjct 425 ACCAAGTGCAAAGTAGATTCCTTCTGAATATTATAATCTGACAATGTACGTCCATCTTCC 366
Query 45188 AGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCA 45247
|| |||||||| || || || | || ||||||||| ||||| | || || ||||| |
Sbjct 365 AGCTGTTTTCCTGCAAAAATAAGCCTCTGTTGGTCAGGAGGAATGCCTTCTTTGTCTTGA 306
Query 45248 ATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTG 45307
|| ||| |||||| | | | || | | ||||| |||| || || || |||
Sbjct 305 ATCTTTGCCTTAACATTTTCTATTGTATCAGAAGCTTCCACTTCCAAAGTGATAGTTTTG 246
Query 45308 CCCGTCAGAGTCTTCACAAAGATTTGCAT 45336
|| ||||| ||||| ||||| ||||||||
Sbjct 245 CCAGTCAGTGTCTTTACAAAAATTTGCAT 217
Score = 89.7 bits (98), Expect = 4e-13
Identities = 156/227 (69%), Gaps = 0/227 (0%)
Strand=Plus/Minus
Query 45110 CCACCTCTCAATCTTAATACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTC 45169
|||||||||| | | ||||| ||||| || ||||||||||| ||||||||
Sbjct 671 CCACCTCTCAGCCGCAGTACCAGGTGCAAAGTTGATTCCTTCTGAATATTGTAGTCAGAT 612
Query 45170 AGTTGGCGATCGTCGTCCAGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGC 45229
||| ||| | || || || || ||||| || || || | | || || || || ||
Sbjct 611 AGTGTGCGTCCATCTTCAAGCTGCTTTCCAGCAAAAATAAGTCTTTGCTGATCTGGGGGA 552
Query 45230 ACACCCTCCTTGTCCGCAATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACC 45289
| |||||| || ||| |||||| |||||| | | | || | | |||||
Sbjct 551 ATACCCTCTTTATCCTGAATTTTCGCCTTAACATTTTCAATTGTATCAGAAGCTTCCACT 492
Query 45290 TCCACGGTAATCGTCTTGCCCGTCAGAGTCTTCACAAAGATTTGCAT 45336
|||| || || |||||||| ||||| ||||| ||||| ||||||||
Sbjct 491 TCCAAAGTGATAGTCTTGCCAGTCAGTGTCTTTACAAAAATTTGCAT 445
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 393741051173743
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |