Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Heliconius_20pachinus_20[genbank_20GCA_5F900068735.1_202017-04-26] 277,083 sequences; 279,264,790 total letters Query= NC_002816.1 Length=123500 Score E Sequences producing significant alignments: (Bits) Value seq15523 199 3e-46 seq10526 104 2e-17 seq27511 89.7 4e-13 >seq15523 Length=5906 Score = 199 bits (220), Expect = 3e-46 Identities = 181/228 (79%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 13216 ACTGGCCCCGTTGTATGAAGCAGAGACCCGAGCAGATGGCGGATGCCGGTTTCTTCTACA 13275 ||||||| || |||||||||||| || ||| | | || || || || |||||||||| Sbjct 5823 ACTGGCCTCGCAGTATGAAGCAGAAGCCTGAGGAACTCGCCGAAGCGGGATTCTTCTACA 5764 Query 13276 CTGGCTACGGTGACAATACAAAGTGCTTCTATTGTGACGGCGGATTGAAAGATTGGGAGC 13335 | ||| | |||||||| || ||||||||||| |||||||||||| | || || |||||| Sbjct 5763 CCGGCCAGGGTGACAAAACTAAGTGCTTCTACTGTGACGGCGGACTCAAGGACTGGGAGA 5704 Query 13336 CGGAAGATGTACCTTGGGAACAGCATGTAAGATGGTTCGACCGTTGCGCCTACGTTCAGC 13395 || || || || ||||| ||||| | | | ||||||||||| ||||||||||| |||| Sbjct 5703 ACGACGACGTGCCGTGGGAGCAGCACGCACGCTGGTTCGACCGGTGCGCCTACGTGCAGC 5644 Query 13396 TAGTCAAGGGTAGAGACTACGTACAGAAAGTCATCACGGAAGCCTGCG 13443 | ||||| || |||| ||||| ||||| || ||||||||||| |||| Sbjct 5643 TGGTCAAAGGCCGAGAGTACGTCCAGAAGGTGATCACGGAAGCGTGCG 5596 >seq10526 Length=5062 Score = 104 bits (114), Expect = 2e-17 Identities = 326/500 (65%), Gaps = 10/500 (2%) Strand=Plus/Plus Query 6850 GTTCGCTCCCTTTCCTCCCGGAAACTCCCAGTCAATATCCACTCCGTCGAAAAACTTCCA 6909 ||| || || || || || || |||||||| || ||||| || || ||||| || ||||| Sbjct 3635 GTTAGCACCTTTGCCACCAGGGAACTCCCAATCGATATCAACACCATCGAAGAATTTCCA 3694 Query 6910 CGTCTCCAGAAACTCGCGCACGCTCTGCACAAACACCCGACGCTTGGCGGAGTCGTGCAT 6969 || |||||||| || ||||||||| | ||| | | | || || Sbjct 3695 TGTTAGAAGAAACTCCTTTACTGACTGCACAAATCGTGTTCTCTTAG---ATTTGT-CAA 3750 Query 6970 CTT----GTAGAAGGGGTCGCTAAGCGTCCACCCGCCTATGGAGGGTAGTATAGTCAGAT 7025 || | |||| || ||| |||||||||||| || || ||||| || || ||| | Sbjct 3751 CTAAAAAGAAGAAAGGATCGGCAAGCGTCCACCCACCAATAGAGGGAAGAATCTTCAATT 3810 Query 7026 TGGGGTTGTGGTGTTTGATGGCCATCAGCTGGCCAAAATTACCCTTATACGGCTCGTCGT 7085 ||| | ||||| | | ||| | |||||||| || || || || ||||||| Sbjct 3811 CAGGGCGGGCTTGTTTTAGTGACATTAATTGGCCAAAGTTGCCTTTGTAGGGCTCGTTCC 3870 Query 7086 ACGCCTCCACACCCTTTTGTGGTTTCTGTACGGCGCCCCACAAATCGTGTATACTCACTT 7145 | | || || ||||||||||| |||| || |||| |||||| || |||| Sbjct 3871 ATGAAGACAATCCTTTTTGTGGTTTTTGTAATGCTGCCCATGGATCGTGGATTGAGACTT 3930 Query 7146 TGAAATCGTCTCGGCCCGCGCACGATCTTTGCAACGCTT-CAAACGACCCCGGCACCTGT 7204 |||| || || ||||| || |||| || | |||| |||| || | | || | Sbjct 3931 TGAAGTCCTCACGGCCGCTACAGGATCGCTGTAGTGCTTGGAAACTGCCTTCG-ATCTCT 3989 Query 7205 TTCAAGGCGTCGTTGAGTCCGTCTCCCCCGCAAATGGGCACAAATCCGTACAGCAAATGG 7264 || || || || | ||||| || |||||||| || | ||| ||||| |||||||| Sbjct 3990 TTTAAACTATCATTAATGCCGTCACCGCCGCAAATTGGAATAAAGCCGTAGAGCAAATGA 4049 Query 7265 CTGAGATTGGGCACGGGCACCTTGTCTGCGGGAAACTGCCGTCCGTACACACCCCACTCC 7324 | ||||| || | || | || |||| || | || || |||||||| || Sbjct 4050 GTAAGATTAGGTATAGGTATACGATCCACGGGGAATTTCCTAGGATAGACACCCCATTCT 4109 Query 7325 ACAAAGTACGCCGCCACCAC 7344 || ||||| || |||| || Sbjct 4110 ACGAAGTAGGCACCCACAAC 4129 >seq27511 Length=800 Score = 89.7 bits (98), Expect = 4e-13 Identities = 145/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 45128 ACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCC 45187 |||||||||| || ||||||||||| || || || || | || | || ||| Sbjct 425 ACCAAGTGCAAAGTAGATTCCTTCTGAATATTATAATCTGACAATGTACGTCCATCTTCC 366 Query 45188 AGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCA 45247 || |||||||| || || || | || ||||||||| ||||| | || || ||||| | Sbjct 365 AGCTGTTTTCCTGCAAAAATAAGCCTCTGTTGGTCAGGAGGAATGCCTTCTTTGTCTTGA 306 Query 45248 ATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTG 45307 || ||| |||||| | | | || | | ||||| |||| || || || ||| Sbjct 305 ATCTTTGCCTTAACATTTTCTATTGTATCAGAAGCTTCCACTTCCAAAGTGATAGTTTTG 246 Query 45308 CCCGTCAGAGTCTTCACAAAGATTTGCAT 45336 || ||||| ||||| ||||| |||||||| Sbjct 245 CCAGTCAGTGTCTTTACAAAAATTTGCAT 217 Score = 89.7 bits (98), Expect = 4e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 45110 CCACCTCTCAATCTTAATACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTC 45169 |||||||||| | | ||||| ||||| || ||||||||||| |||||||| Sbjct 671 CCACCTCTCAGCCGCAGTACCAGGTGCAAAGTTGATTCCTTCTGAATATTGTAGTCAGAT 612 Query 45170 AGTTGGCGATCGTCGTCCAGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGC 45229 ||| ||| | || || || || ||||| || || || | | || || || || || Sbjct 611 AGTGTGCGTCCATCTTCAAGCTGCTTTCCAGCAAAAATAAGTCTTTGCTGATCTGGGGGA 552 Query 45230 ACACCCTCCTTGTCCGCAATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACC 45289 | |||||| || ||| |||||| |||||| | | | || | | ||||| Sbjct 551 ATACCCTCTTTATCCTGAATTTTCGCCTTAACATTTTCAATTGTATCAGAAGCTTCCACT 492 Query 45290 TCCACGGTAATCGTCTTGCCCGTCAGAGTCTTCACAAAGATTTGCAT 45336 |||| || || |||||||| ||||| ||||| ||||| |||||||| Sbjct 491 TCCAAAGTGATAGTCTTGCCAGTCAGTGTCTTTACAAAAATTTGCAT 445 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 393741051173743