Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Heliconius_20pachinus_20[genbank_20GCA_5F900068735.1_202017-04-26] 277,083 sequences; 279,264,790 total letters Query= NC_003278.1 Length=35580 Score E Sequences producing significant alignments: (Bits) Value seq268213 154 3e-33 seq253728 154 3e-33 seq125599 154 3e-33 seq216104 132 1e-26 seq56468 123 6e-24 >seq268213 Length=253 Score = 154 bits (170), Expect = 3e-33 Identities = 123/148 (83%), Gaps = 0/148 (0%) Strand=Plus/Minus Query 3386 TCGAGAAGTAGGTCCGGCGGTAGCGCTTCTGCATCGCCATACCGCTGGCGACCTTGTTCA 3445 ||||||| || || ||| | ||||||| ||||||||||| |||||||||||||||| | Sbjct 253 TCGAGAAATACGTGCGGGGCCAGCGCTTGTGCATCGCCATCGCGCTGGCGACCTTGTTGA 194 Query 3446 GCTCCTTGAACTTGAACGTCCAGAAGAACTCGTCGAAGTAGAAGTTGCCGTGGTAGCCCT 3505 | |||| |||| | | |||||||| ||||||||||| ||||| |||||||| ||||||| Sbjct 193 GTTCCTCGAACCCGTAGGTCCAGAAAAACTCGTCGAAATAGAAATTGCCGTGATAGCCCT 134 Query 3506 GGGCAGTCCGCGCGTTGGTGCCGAGGAA 3533 | || || ||||| ||||| |||||||| Sbjct 133 GCGCGGTGCGCGCATTGGTCCCGAGGAA 106 >seq253728 Length=404 Score = 154 bits (170), Expect = 3e-33 Identities = 241/336 (72%), Gaps = 18/336 (5%) Strand=Plus/Minus Query 3212 CCTCGGCATCGAGGATGGTGACGATCTGGCGCCAGATGCGGTCCTCGCACAGTCGC-CCT 3270 |||| || ||| ||||| | ||||| |||||||| || ||||| || | ||| || Sbjct 399 CCTCCGCGTCGCGGATGTTCACGATGTGGCGCCAAATCCGGTCGGGGCCGAC-CGCGCCG 341 Query 3271 TGCTGCAGGGCGTCATGACTTACGTCGATCTTGATGCGATCGGCGGCCGGCTT---GCCC 3327 | | ||| || |||| || ||||| | || || |||||| | | ||| || | Sbjct 340 TCCGCCAGCGCTGCATGGCTCACGTCCAGCTCGACGCGATCTTC---CTTCTTTCGGCGC 284 Query 3328 TTGTTGAAGCGCTCGCCAGTCCAGAATGTGTAGGCCTCATGCGCCA---TCGAACTGGGC 3384 |||| |||||||| |||||| ||| ||||| ||| || |||| ||| Sbjct 283 CGGTTGCGCCGCTCGCCGGTCCAGTATGGATAGGCGGGGTGCAGCACGGTCGAT---GGC 227 Query 3385 GTCGAGAAGTAGGTCCGGCGGTAGCGCTTCTGCATCGCCATACCGCTGGCGACCTTGTTC 3444 ||||| |||||||| || | ||| ||| ||||||| || ||||||||||||| Sbjct 226 GTCGAAAAGTAGGTTTTTCGCCACTTCTTGTGCGTCGCCATCCCCGAGGCGACCTTGTTC 167 Query 3445 AGCTCCTTGAA-CT-TGAACGTCCAGAAGAACTCGTCGAAGTAGAAGTTGCCGTGGTAGC 3502 ||||||| ||| || ||||| |||||||||||||||||||||||| |||||||| | Sbjct 166 AGCTCCTCGAAGCTGTGAAC--CCAGAAGAACTCGTCGAAGTAGAAATTGCCGTGCCGCC 109 Query 3503 CCTGGGCAGTCCGCGCGTTGGTGCCGAGGAAGTGCA 3538 |||| || || || ||| |||||||||||||||| Sbjct 108 CCTGCGCGGTGCGAAAGTTCGTGCCGAGGAAGTGCA 73 >seq125599 Length=907 Score = 154 bits (170), Expect = 3e-33 Identities = 255/367 (69%), Gaps = 9/367 (2%) Strand=Plus/Plus Query 3175 CGCAGCTCGTCGATGTCGAACAGATCGCAGCCACGGGCCTCGGCATCGAGGATGGTGACG 3234 ||||||||||||||||||||||| ||||| || ||||||||||||| ||| |||||| Sbjct 459 CGCAGCTCGTCGATGTCGAACAGGTCGCAACCCGCGGCCTCGGCATCGGTGATCGTGACG 518 Query 3235 ATCTGGCGCCAGATGCGGTCCTCGCACAGTCGC-CCTTGCTGCAGGGCGTCATGACTTAC 3293 || || ||||||||||| ||| | | | ||| || | || ||| ||||| || || || Sbjct 519 ATATGCCGCCAGATGCGATCCGGTCCCTG-CGCGCCGTCCTTCAGCGCGTCGTGGCTGAC 577 Query 3294 GTCGATCTTGATGCGATCGGCGGCCGGCTTGCC-CTTGTTGAAGCGCTCGCCAGTCCAGA 3352 ||||||| || ||| ||||| ||| ||| | |||| ||||| || |||||| Sbjct 578 ATCGATCTCGACGCGCTCGGC-TTTGGCGCGCCGCCGGTTGCGCCGCTCACCCGTCCAGT 636 Query 3353 ATGTGTAGGCCTCATGCGCCATCGAACTGGGCGTCGAGAAGT-AGGTCCGGCGGTAGCGC 3411 | | ||||| ||||||| |||| ||||||||||||| Sbjct 637 ACGGATAGGCGGCATGCGCGATCGTCGACGGCGTCGAGAAGTNNNNNNNNNNNNNNNNNN 696 Query 3412 TTCTGCATCGCCATACCGCTGGCGACCTTGTTCAGCTCCTTG-AACT-TGAACGTCCAGA 3469 |||||| ||||| ||||||| ||||| | |||| ||||| ||| | Sbjct 697 NNNNNNNNNNNCATACCCGACGCGACTTTGTTCAACTCCTCGAAACTATGAAC--CCAAA 754 Query 3470 AGAACTCGTCGAAGTAGAAGTTGCCGTGGTAGCCCTGGGCAGTCCGCGCGTTGGTGCCGA 3529 |||| ||||| ||||||||||||||||| || || ||||| || || || |||| Sbjct 755 AGAATTCGTCAAAGTAGAAGTTGCCGTGACGCCCTTGCGCAGTGCGAAAATTCGTTCCGA 814 Query 3530 GGAAGTG 3536 | ||||| Sbjct 815 GAAAGTG 821 >seq216104 Length=459 Score = 132 bits (146), Expect = 1e-26 Identities = 174/239 (73%), Gaps = 4/239 (2%) Strand=Plus/Minus Query 32247 AAAGTGCCGCCCTTCCTGTACGAGCCGGAGAAGAAGAGCCTGCGCGCCGTCGGCGACATC 32306 || |||||| ||| | || |||| | |||||| | ||||||| |||||||| | Sbjct 253 AAGGTGCCGAATTTCATCTATCAGCCCGCCAAGAAGCGGCTGCGCGGTGTCGGCGAGGTG 194 Query 32307 CTCGGCCGCATGCCGCTGCCCGGCGATATCGACGCCGCCGGCCCGATGCACCGTGTGCCA 32366 ||||| |||||||||||||||| | ||| | || | |||||||| ||||| Sbjct 193 ATCGGCAAGCTGCCGCTGCCCGGCGACCCGGTCGCAGGCGTC---ATGCACCGCGTGCCC 137 Query 32367 TCCCTGCAGTGGAAGACCTGGGTTCGCCTGGCACTGGTGCGAGCCGGCAGCGACTGGCGC 32426 | || ||||||||||| ||||| ||||| || | |||| || ||| | ||||||||| Sbjct 136 GCGCTCCAGTGGAAGACGTGGGTGCGCCTTGCCTTCGTGCCGGCGGGCCGGGACTGGCGC 77 Query 32427 AGCCTGAACGACCTCGCCGTCGAGGACGGCTACCTGCGCGATCTGATCATCGT-CCCGA 32484 |||||||| |||||||||| ||||| |||| || ||| | |||||| ||||| Sbjct 76 GCGCTGAACGATCTCGCCGTCGTCGACGGGCACCTCCGAGATTTCGCCATCGTACCCGA 18 >seq56468 Length=1893 Score = 123 bits (136), Expect = 6e-24 Identities = 449/693 (65%), Gaps = 65/693 (9%) Strand=Plus/Minus Query 5607 CGAGTTCCAGGCCCTGCTGCGCGACGCGATCCTCAAGCGCCA-GGCCCTCGACCGCCTGA 5665 ||| |||||| ||||||||||||| |||||| ||| |||||| |||| ||||| | | | Sbjct 805 CGATTTCCAGACCCTGCTGCGCGATGCGATCATCA-GCGCCAAGGCCGTCGACATCATCA 747 Query 5666 TGATCGGCTTCAACGGC---ACCAGCGCCGCGGCTACCACCAACCGCGCCGCCAACCCGC 5722 |||||||||||||||| | ||| || | ||| ||| | |||| | |||| Sbjct 746 CGATCGGCTTCAACGGCGTGAAGGTAGCCAAGGAT---ACCTACCCGGTCGCCTATCCGC 690 Query 5723 TGCTGCAGGACGTGAACATTGGCTGGTTCCAGCAGTACCGCAACAACGCTCCGGCACG-- 5780 | || |||||||| |||| |||||| ||||||| |||| | |||| |||| ||| Sbjct 689 TCCTTCAGGACGTCAACAAGGGCTGGCTCCAGCACATCCGCGAAGACGCCCCGGAACGCC 630 Query 5781 -----------GGT--ACTGAAGG---------AAGGGAA---------GACC--ACCGG 5807 ||| ||||||| || ||| |||| ||| | Sbjct 629 ACGCGGCAGGCGGTGACCTGAAGGCAGAAACCCGAGTGAACGGCGTCGTGACCGTACCAG 570 Query 5808 -------CAAGGTGGTAGTCGGCAA---CGGCGCCGACGCCGACTACAAGAACCTCGACG 5857 | | || | | ||| | ||| | ||| | ||| ||| ||| |||||| Sbjct 569 GCGCGATCTACGTCGGGGCCGGTGAAGTCGGTGTCGAGGTCGATTACGTCAACATCGACG 510 Query 5858 CCCTGGTGTTCGACGTGGTC-AGCAGCCTGATCGATCCCTGGCACCGCCGTGACCCGGGC 5916 | ||||||||| || || | | | ||| ||| || ||||| || | | | Sbjct 509 CAATGGTGTTCGCCGGCATCGAACTG-CTGCACGAGAACT---ACCGCGAGGATACAGAC 454 Query 5917 CTGGTGGTGATCCTCGGCCGCGAGCTGGTCCACGACAAGTACTTCCCGATGGTGAAC--- 5973 ||||| | |||| ||||||||| ||| ||| |||||||||| ||| |||| || ||| Sbjct 453 CTGGTCGCGATCGTCGGCCGCGCGCTCGTCAACGACAAGTATTTCTCGATCGTCAACGCA 394 Query 5974 AAGGACCAGCCGGCAACCGAGAAGATCGCCACCGACCTCATCCTGTCGCAGAAGCGCATG 6033 || | | |||||||||| || | || ||| || | ||||| | ||| || Sbjct 393 TCGGGCGACAAGGCAACCGAGCAGCTGGCGCGTGACGTCCTGCTGTCCGACAAGAAGATC 334 Query 6034 GGCGGCCTGCCGCCGGTGGAAGTGCCCTACGTGCCCGAGAAGGGCC-TCATGGTCACCAC 6092 ||||| || | |||| ||| || | || ||| | || ||| || || ||||||| Sbjct 333 GGCGGTTTGACCGCGGTCCGCGTG-CCGAAGTTCCCAAAGAGCGCCATCCTGATCACCAC 275 Query 6093 CCTGAAGAACCTGTCGCTCTACTGGCAGATCGGCGGTCGCCGCCGCTACCTGAAGGAGGT 6152 || ||||||||| |||| ||||||||| || ||| | | |||| Sbjct 274 GCTCGCCAACCTGTCGGTCTATGAACAGATCGGCACCGAGCGTCGCAAGATCGAGGACAA 215 Query 6153 ACCGGAGAAGAACCGCATCGAGAACTACGAGTCCAGCAACGACGCCTACGTCGTCGAGGA 6212 | || ||| ||||||||||||||| | |||| ||||||| |||||||| || Sbjct 214 CGCCAAGCGCGACCAGATCGAGAACTACGAGAGCGTCAACCACGCCTATGTCGTCGAAGA 155 Query 6213 CTACGGCCTCGGCTG-CCTGGTCGAGAACATCG 6244 | | || | ||||| ||| |||||||||||| Sbjct 154 C-ATGGGCAAGGCTGTGCTGATCGAGAACATCG 123 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 113360172808532