Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Heliconius_20pachinus_20[genbank_20GCA_5F900068735.1_202017-04-26]
277,083 sequences; 279,264,790 total letters
Query= NC_003310.1
Length=196858
Score E
Sequences producing significant alignments: (Bits) Value
seq13366 542 4e-149
seq7533 96.9 4e-15
seq56708 87.8 2e-12
>seq13366
Length=6323
Score = 542 bits (600), Expect = 4e-149
Identities = 1114/1631 (68%), Gaps = 59/1631 (4%)
Strand=Plus/Plus
Query 62026 TTATTTTATCCTTGTCCAATGTGAATTGAATGGGAGCGGATGCGGGTTTCGTACGTAGAT 62085
|||||||| | ||||| | || || ||||| | | | ||| ||||| || |||| |
Sbjct 494 TTATTTTACCTTTGTCTACAGTAAACTGAATAGCATTTGCTGCTGGTTTTGTGCGTAAGT 553
Query 62086 AGTACATTCCCGTTTTTAGACCGAGACTCCATCCGTAAAAATGCATACTCGTTAGTTTGG 62145
|||||||||| ||||||| || | |||| ||| ||||| || ||| |||||
Sbjct 554 AGTACATTCCTGTTTTTAATCCCATTTTCCAAGCGTGGAAATGAATCGACGTAAGTTTTC 613
Query 62146 AATAACTCGGATCTGCTATATGGATATTCATAGATTGACTTTGATCGATGAAGGCTCCCC 62205
||| | || | || | ||| || || | |||||||||||| || || || ||||| |
Sbjct 614 CATAGTTAGGTTTAGCAACATGTATGTTAAAAGATTGACTTTGGTCTATAAAAGCTCCTC 673
Query 62206 TGTCTGCAGCCATTTTTATGATCGTCTTTTGTGCAATTTCCCAAATAGTTTTATA-AACT 62264
| || || ||||| | |||| || || ||| ||| ||||| | ||||| || || |
Sbjct 674 TATCAGCTGCCATCTGTATGGATGTTTTCAGTGAAATCTCCCATACGGTTTTGTACAAAT 733
Query 62265 CGCTTAATATCTTCTGGAAGGTTTGTA--TTCT-GAATGGATCCACCATCTACCATAATC 62321
| |||| | |||| |||| ||| | |||| | || |||||| | |||||
Sbjct 734 CTCTTATT-TCTTTAGGAATTTTTTCAATTTCTTGTATAGATCCATTGTTGTATATAATA 792
Query 62322 CTATTCTTGATCTCATCATTCCATAATTTTCTCTCGGTTAAAACTCTAAGGAGATGCGGG 62381
||| || || || |||| ||| || | | || ||| | | || ||||| ||
Sbjct 793 AGATTTTTCATATCTTCATCCCACAAATCAGCCCGAGTCAAATCAGTCAGAAGATGATGG 852
Query 62382 TTAACTACTTGGAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGT 62441
|| ||||| | ||||||||||| || ||||| | ||||||||| ||| | |||
Sbjct 853 TTCACTACAGGAAATTCTCCAGATAAGACTCTTCTTTGGTAAATATTTGATGTAAAGGGT 912
Query 62442 TCCACCGACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACC 62501
|| | || ||| | || || | |||||| ||||| || |||||||||||||| || | |
Sbjct 913 TCAAAAGATTCAGTGTTGCCAAGAATTTGTGCAGTAGAGGCAGTCGGCATAGGAGCTATC 972
Query 62502 AATAAACTATTTCTAAGACCGTATGTTCTG--ATTTTATCTTTTAGATGTTCCCAATTCC 62559
|||| | ||| | | ||| ||||| || || || ||||| || |||| | ||
Sbjct 973 AATAGAGAATTGCGCAAACC--ATGTTTTGCTATCTTTTCTTTAAGGACAGCCCAGTCCC 1030
Query 62560 AAAGATCCGACGG-------TACAACANNNNNNNNNNNATATTGTAGAATACCGTTACTG 62612
|||| || | || | | ||| ||| || || ||||| | ||
Sbjct 1031 AAAGGTCTGTAGGAGTTTTGTCCCACATATC-------ATACTGGAGGATACCTTGGCTT 1083
Query 62613 GC-GTACGATCCTACATATGTATCATATGGTCCTTCCTTCTCAGCTAGTTTACAACTCGC 62671
|| | || ||| |||||| |||| ||||| || ||||||| || |||||| ||
Sbjct 1084 GCTGGACTC-CCTTGATATGTGCTGTATGCACCTTCTTTTTCAGCTAATTCACAACTAGC 1142
Query 62672 CTCTAATGCACCGTAATAAATGGTTTCAAAGATCTTCTTATTTAGATCTTGTGCTTCCGG 62731
||||||||||| |||||||| |||||||| || | | ||| ||| | ||||| |
Sbjct 1143 TTCTAATGCACCATAATAAATTGTTTCAAATATTTGTTGATTGAGAAGTATTGCTTTCTC 1202
Query 62732 GCTATCAAATGGATAATTTAAGAGA-ATAAACGCGTCCGCTAATCCTTGAACACCAATAC 62790
|| || | | ||| | | | | | |||||| || || | || |||||||||||||
Sbjct 1203 ACTTTCGTAAG-ATATTCTCATCAACACAAACGCATCTGCCATGCCCTGAACACCAATAC 1261
Query 62791 CGATAGGTCTATGTCTCTTATTAGAGATTTCAGCTTCTGGAATAGGATAATAATTAATAT 62850
| ||||||||||||||| |||| || ||| || || || | ||||||| |||||| ||
Sbjct 1262 CAATAGGTCTATGTCTCATATTTGAAGTTTTTGCCTCAGGGACAGGATAAAAATTAACAT 1321
Query 62851 CTATAATTTTATTGAGATTTC---TGACAATTACTTTGACCACATCCTTCAGTTTGAGAA 62907
| |||| ||| || | |||| | ||||| ||||| | || || | ||| ||
Sbjct 1322 CAATAACTTTGTTTAAATTTTGAGTTACAAT--CTTTGTG-ATTTCTTTTAATTTTTTAA 1378
Query 62908 AATCAAATCGCCCATCTATTACAAACATGTTCAATGCAACAGATGCCAGATTACACACGG 62967
||| ||||| || | ||||||||||| | ||| | || || || || ||||| |
Sbjct 1379 AATTAAATCTGTTATTTTCAACAAACATGTTAAGTGCTATGGAAGCAAGGTTGCACACTG 1438
Query 62968 CTACCTCATTAGCATCCGCA---TATTGTATTATCTCAGTGCAAAGATTACTACACTTGA 63024
| || |||| | || | | ||||| | | ||||||||||||||| ||||| || |
Sbjct 1439 CCACTTCAT---CTTCTGAAGTGTATTGCACAACCTCAGTGCAAAGATTGCTACATTTAA 1495
Query 63025 TAGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACACGCATCCTTATAAAGAATGAATG 63084
|||| || | ||||| ||||||||||||| ||||||| ||||||||||| | ||| |||
Sbjct 1496 TAGTGCCAAGATTTTTTTGATTACTCTTTCTGTTACAAGCATCCTTATACAACATGTATG 1555
Query 63085 GAGTACCAGTTTCAATCTGAGATTCTATAATCGCTTTCCAGACGACTCGAGCCTTTATTA 63144
| |||||||| || | || | ||||||||| | ||||| | || |||| | | |
Sbjct 1556 GTGTACCAGTCTCCACTTGGGCTTCTATAATTGACTTCCATAACTCTTGAGCTCTGACTT 1615
Query 63145 TAGATTTGTATCTCCTTTCTCTT--TCGTATAGAGTATACAATCGTTCGAACTCGTCTCC 63202
| ||| || || ||| |||| || ||| | ||| | | ||| || || |||||
Sbjct 1616 --GTTTTATAAATCGTTTTTCTTCTTCATATTTGGCATATAGTTCTTCAAATTCCTCTCC 1673
Query 63203 CCAAACATTGTCCAAT-CTAGGACATTCATCCGGACACATCAACGACCACTCTCCGTCAT 63261
|| || | | | | |||||| |||| |||||||| | ||| || ||||
Sbjct 1674 A-AAGCAGTCAGCGAGGCCAGGACAATCATGAGGACACATGAGACTCCAAACT---TCAT 1729
Query 63262 CCTTC---ACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTTG 63318
|||| |||| ||||||||| ||||| || ||||| | ||| ||| || ||||| |
Sbjct 1730 CCTTTTCTACTCTTTTCATAAACAGATCTGGTATCCATAAAGCATAAAACAGTTCTCTAG 1789
Query 63319 TTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAAT 63378
||| ||| || || ||||| ||||| || | ||| | ||| | | ||||| | ||
Sbjct 1790 CTCTCATTTCTTCCTTACCTGTGTTCTTCTTTAAATCCAAGAATTCAAATATATCCGCAT 1849
Query 63379 GCCACGGTTCCAAGTATATGGCCATAACTCCAGGCCGTTTGTTTCCTCCCTGATCTATGT 63438
|||| || || || || || || | | || || ||||||||||| || ||||||| |
Sbjct 1850 GCCAAGGCTCTAAATAAATTGCAAATGCGCCGGGACGTTTGTTTCCACCTTGATCTACAT 1909
Query 63439 ATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCGTTTGATATACCATTGG 63498
|||| || || || ||||| |||||||||||||| | | ||| ||||| | ||||| |
Sbjct 1910 ATCTGGCAGTATTGTTATACACTCTCAACATTGGCACTAGACCATTTGAGACCCCATTAG 1969
Query 63499 TACCGGAGATATAGCCTCCACTG-GCACGAAT---ATTACTAATTGATAGACCTATTCCC 63554
| || | || || || ||| || | || || || || || |||||| ||
Sbjct 1970 TGCCAGCTATGTAAGAACC-CTGAGCTCTGATGCAATGTGTA--TG-TAAACCTATGCCA 2025
Query 63555 CCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTGTCATAGATGCCTTCTATGCTA 63614
|| || |||||| |||||||| ||| ||||||| || ||| | || ||||| ||||||
Sbjct 2026 CCAGCAGATTTAGAAATTAATGCACATTGTTTTAAAGTATCAAAAATACCTTCAATGCTA 2085
Query 63615 TCATCGATCAT 63625
|| || ||||
Sbjct 2086 TCGTCTTTCAT 2096
Score = 104 bits (114), Expect = 3e-17
Identities = 107/140 (76%), Gaps = 0/140 (0%)
Strand=Plus/Plus
Query 64017 ttttttGTTTCCTTGTGTAGATTTGATATGGCTATTCTGGCGGCTAGAATGGCATAATCC 64076
|| || || || || |||| ||| ||||| ||||||||||| || | |||||||||||||
Sbjct 3380 TTCTTGGTGTCTTTATGTAAATTGGATATTGCTATTCTGGCAGCCAAAATGGCATAATCC 3439
Query 64077 GGATGTTGTGTAGTACAAGTGGCTGCTATTTCGGCTGCCAGAGTGTCCAATTCTACCGTT 64136
||||| | ||| || ||| ||||||||||| || || ||| | || | || | |||
Sbjct 3440 GGATGATCTGTGGTCTTAGTAGCTGCTATTTCTGCAGCTAGATTATCAAGCTCAGCAGTT 3499
Query 64137 GTTACTCCATTATATATTCC 64156
||||| ||| |||||| ||
Sbjct 3500 GTTACACCAGAATATATGCC 3519
Score = 91.5 bits (100), Expect = 2e-13
Identities = 70/83 (84%), Gaps = 0/83 (0%)
Strand=Plus/Plus
Query 63807 TTGTTGTTTATTTTCAACAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTAT 63866
|| |||||||| |||||||| || ||| ||||||||||||| ||||||||||||||||||
Sbjct 2610 TTATTGTTTATCTTCAACAAATATGATCTTTCCAAAGTTTTGAAACCAAAATAGTTGTAT 2669
Query 63867 GAAAAGTCTCGTTCGTAAATAAT 63889
||| |||| || |||| |||
Sbjct 2670 TTAAAATCTCTATCATAAACAAT 2692
>seq7533
Length=2710
Score = 96.9 bits (106), Expect = 4e-15
Identities = 86/108 (80%), Gaps = 0/108 (0%)
Strand=Plus/Minus
Query 34068 TTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATACATATTC 34127
||||||| || |||||||| | |||||||| ||||| || || ||||||||||| | |
Sbjct 680 TTAGATAAGTCTACTTCTTCTGCAGTCCAAAACGATGCTTCAGCTTTTTTATACATCTGC 621
Query 34128 CAGATGTCATGATATTGGATTGGGAAAATAACAAATCTATTTGGATTT 34175
|| || || |||||||||||||||| |||||||| | | ||||||
Sbjct 620 CATATATCTGGATATTGGATTGGGAATATAACAAAACGTCTAGGATTT 573
>seq56708
Length=5257
Score = 87.8 bits (96), Expect = 2e-12
Identities = 245/372 (66%), Gaps = 13/372 (3%)
Strand=Plus/Plus
Query 155252 TTATGACTCCA--ATTAATCCCATGTTAGCGGAATCATGTGATTCTGTCAATAAGGCGTT 155309
||||||||||| |||| || |||||||| ||| | || | || || | | ||| |
Sbjct 2030 TTATGACTCCAGTATTA--CCGATGTTAGCAGAAGCTTGCAAGTCAGTTGAAATGGCTAT 2087
Query 155310 TAAAAAATTTCCATCAGGAATGTTTGCGGAAGTCAAATACGATGGTGAAAGAGTACAAGT 155369
||||||| |||| || |||||| | || | ||||| ||||| ||| | || |||||
Sbjct 2088 GAAAAAATGTCCAAATGGCATGTTTTCTGAGATAAAATATGATGGAGAACGGGTTCAAGT 2147
Query 155370 TCATaaaaaaaaTAACGAGTTTGCATTCTTTAGTAGAAACATGAAACCAGTACTCTCTCA 155429
|||||||| || ||||| || ||| | | | ||||||||| | ||||
Sbjct 2148 CCATAAAAAGGGAAATGAGTTCAAATATTTTTCCCGTGCCTTAAAACCAGTAATGGCTCA 2207
Query 155430 TAAAGTGGATTATCTCAAAGAATACATACCGAAAGCATT---TAAAAAAGCTACGTCTAT 155486
||||| | || | ||||| || |||| |||||||| |||| || | | ||
Sbjct 2208 CAAAGTTAGTCATTTTAAAGATTATTTACCCAAAGCATTTCCTAAAGGAGATGATTTGAT 2267
Query 155487 CGTATTGGATTCTGAAATTGTTCTTGTAGACGAACATAATG---TACCGCTACCGTTTGG 155543
| |||||| ||||| | || | || || | ||| || ||| | || || ||
Sbjct 2268 C---TTGGATGCTGAAGTACTTATGGTTGATGTCAATACTGGAAAACCATTGCCTTTCGG 2324
Query 155544 AAGTTTAGGTATACACAAAAAGAAAGAATATAAAAACTCTAACATGTGTTTGTTCGTGTT 155603
| |||||||| |||||| | ||||| |||| | || | | || || | | ||
Sbjct 2325 TACATTAGGTATTCACAAACAATCAGAATTTAAAGATGCTCAAGTTTGCTTATATATATT 2384
Query 155604 TGACTGTTTATA 155615
||| || |||||
Sbjct 2385 TGATTGCTTATA 2396
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 627636203124240
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |