Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Heliconius_20pachinus_20[genbank_20GCA_5F900068735.1_202017-04-26] 277,083 sequences; 279,264,790 total letters Query= NC_003389.1 Length=146454 Score E Sequences producing significant alignments: (Bits) Value seq13366 524 7e-144 seq7533 136 4e-27 >seq13366 Length=6323 Score = 524 bits (580), Expect = 7e-144 Identities = 1185/1762 (67%), Gaps = 31/1762 (2%) Strand=Plus/Plus Query 36805 ATAGGATTTGATGCCGATTTTGTTCTCATATAATACATTCCAGTTTTTAGCCCCAATCTC 36864 |||| ||||| ||| | |||||| | | || |||||||| ||||||| |||| | || Sbjct 523 ATAGCATTTGCTGCTGGTTTTGTGCGTAAGTAGTACATTCCTGTTTTTAATCCCATTTTC 582 Query 36865 CATCCGTAAAAATGCATACTGGTCAGTTTTGCGTATGTAGGATTATCTATATATATTGTC 36924 || ||| ||||| || || |||||| | || |||| ||| | | || ||| | Sbjct 583 CAAGCGTGGAAATGAATCGACGTAAGTTTTCCATAGTTAGGTTTAGCAACATGTATGTTA 642 Query 36925 ATTGATTGACTTTGATCTATAAACGCACCTCTGTCGGCTGCCATTTCTAAAATACATTTT 36984 | ||||||||||| |||||||| || ||||| || |||||||| | || | || || Sbjct 643 AAAGATTGACTTTGGTCTATAAAAGCTCCTCTATCAGCTGCCATCTGTA---TGGATGTT 699 Query 36985 T---GAGATATCTCCCAAACCGTTTTATATATTTGTTTTATATTATCTGGTAAATCTA-- 37039 | | || |||||||| || ||||| || | | | |||| || | | | || | | Sbjct 700 TTCAGTGAAATCTCCCATACGGTTTTGTACAAATCTCTTAT-TTCTTTAGGAATTTTTTC 758 Query 37040 AATGT--TGAATAGAACCATTATGTAACACAATTGTATTCTTTATGTCATTATTCCACAT 37097 ||| | || ||||| ||||| | | | ||| ||| || || || | || ||||| Sbjct 759 AATTTCTTGTATAGATCCATTGTTGTATATAATAAGATTTTTCATATCTTCATCCCACAA 818 Query 37098 ATTTCTACTTATTAGTTCTCTCAATAGGTGTGGATTTACAACCTGAAAATCTCCAGATAA 37157 || | | | || ||| || || | || || || |||| ||||||||||| Sbjct 819 ATCAGCCCGAGTCAAATCAGTCAGAAGATGATGGTTCACTACAGGAAATTCTCCAGATAA 878 Query 37158 TACTCTTCTT--GTATATATATTGCTAGTATATGGTTCAATGGACTCATTATTACTTAAT 37215 ||||||||| ||| |||| ||| | ||| | ||||||| || ||| | || | | Sbjct 879 GACTCTTCTTTGGTAAATAT-TTGAT-GTAAAGGGTTCAAAAGATTCAGTGTTGCCAAGA 936 Query 37216 ATTTGAGATGTAGATGCAGTAGGCATTGGTGCTATTAGAAGGCTATTTCTCAATCCATGT 37275 ||||| | ||||| ||||| ||||| || ||||| | || ||| | ||| |||||| Sbjct 937 ATTTGTGCAGTAGAGGCAGTCGGCATAGGAGCTATCAATAGAGAATTGCGCAAACCATGT 996 Query 37276 GTATTAATTCTCTTTTTTAGTTCATTCCAATCCCATAAATCTGTTGGGTTCTTTAACCAC 37335 | || | | ||| || || ||| ||||| | ||||| || | || |||| Sbjct 997 TTTGCTATCTTTTCTTTAAGGACAGCCCAGTCCCAAAGGTCTGTAGGAGTTTTGTCCCAC 1056 Query 37336 ATATCATATTGTAGAATACCTTTACTCGCTGGAGAATCGTTATATGTCTCATAAGGTCCG 37395 |||||||| || || ||||||| || |||||| | | |||||| || | || Sbjct 1057 ATATCATACTGGAGGATACCTTGGCTTGCTGGACTCCCTTGATATGTGCTGTATGCACCT 1116 Query 37396 TAAATTTTAGCTAGTTCGCAACTAGATTCTAGTGCGGCATAATATATTGTTTCGAAAATT 37455 | ||| ||||| ||| ||||||| ||||| ||| ||||||| |||||||| || ||| Sbjct 1117 TCTTTTTCAGCTAATTCACAACTAGCTTCTAATGCACCATAATAAATTGTTTCAAATATT 1176 Query 37456 TGTATATTTAATATTTTTGCTTCTTCGCTATCGAATGCATAGCCCAAT-AATATAAACAC 37514 ||| ||| | | | |||||| || || ||| | | ||| | || || | |||| | Sbjct 1177 TGTTGATTGAGAAGTATTGCTTTCTCACTTTCGTAAG-ATATTCTCATCAACACAAACGC 1235 Query 37515 ATCAGCCAAACCCTGAACACCGATACCTATGGGTCTATGTTTCTTATTAGATCTAGACGA 37574 ||| |||| ||||||||||| ||||| || ||||||||| || |||| || | | Sbjct 1236 ATCTGCCATGCCCTGAACACCAATACCAATAGGTCTATGTCTCATATTTGAAGTTTTTGC 1295 Query 37575 TTCTATCACTGGATAATAATTGATATCTATTATTTTATTTAGATTTTTAACTAGTATTTT 37634 || || |||||| |||| | ||| || | ||| |||| ||||| | || || || Sbjct 1296 CTCAGGGACAGGATAAAAATTAACATCAATAACTTTGTTTAAATTTTGAGTTACAATCTT 1355 Query 37635 CGTAATTATTCTCAACTTGTCGAACATAAATACGTTATTATTAACAAATTTACTCAACGA 37694 || ||| | | || || | || ||||| |||||| | |||||| | | | | Sbjct 1356 TGTGATTTCTTTTAATTTTTTAAAATTAAATCTGTTATTTTCAACAAACATGTTAAGTGC 1415 Query 37695 AATAGATCCTAGATTACATACAGCAACTTCATCTTCGTTACTAAATTGTATAATCTCTGT 37754 || || | || || || || || ||||||||||| | | |||| | || ||| || Sbjct 1416 TATGGAAGCAAGGTTGCACACTGCCACTTCATCTTCTGAAGTGTATTGCACAACCTCAGT 1475 Query 37755 ACAGAGATTACTCGATCTAATTGTTCCCAAATTGCTTTGATTGGATTTTTTATTACAAGA 37814 || ||||| || || |||| || || | ||| ||||||| ||| | ||||||| Sbjct 1476 GCAAAGATTGCTACATTTAATAGTGCCAAGATTTTTTTGATTACTCTTTCTGTTACAAGC 1535 Query 37815 ATCTTTATATAGTATATACGGCGTTCCTTGTTCTATTTGAGCCTCGATAATAGATTTCCA 37874 ||| ||||| | || || || || || || | ||| || || ||||| || ||||| Sbjct 1536 ATCCTTATACAACATGTATGGTGTACCAGTCTCCACTTGGGCTTCTATAATTGACTTCCA 1595 Query 37875 TAAACTTCTT--GCTTTAACGATCGCTTT---AAt-ttttttCTTTGTTTCGTATTCTAT 37928 ||| |||| ||| | || | | ||| ||| |||||||| ||| |||| Sbjct 1596 TAA--CTCTTGAGCTCTGAC--TTGTTTTATAAATCGTTTTTCTT--CTTCATATTTGGC 1649 Query 37929 ATATAATTTGTTAAAATCATTCCCCCATACA-TCGCATAATCCTGGACATTCGCATGGAC 37987 |||| | || || |||| || || | || || | || ||||| || |||| Sbjct 1650 ATAT-AGTTCTTCAAATTCCTCTCCAAAGCAGTCAGCGAGGCCAGGACAATCATGAGGAC 1708 Query 37988 ACATTAGAGACCATTCTTCATCTTTTTCTACGCGTTCCATAAATAAATCAGGTACCCATA 38047 |||| ||| ||| ||||||| |||||||| | || |||||| | ||| |||| ||||| Sbjct 1709 ACATGAGACTCCAAACTTCATCCTTTTCTACTCTTTTCATAAACAGATCTGGTATCCATA 1768 Query 38048 ATGCAGTAAATAAATCTTTGGTTCTATATTCTTCGTTCCCTACATTCTTTCTTAAGCTTA 38107 | ||| ||| | ||| | | ||| |||||| || ||| ||||| |||| | Sbjct 1769 AAGCATAAAACAGTTCTCTAGCTCTCATTTCTTCCTTACCTGTGTTCTTCTTTAAATCCA 1828 Query 38108 GAAAATCGAATATATCAGCGTGCCATGGTTCTATATAAATCGACATTGCTCCTGGTCTTT 38167 || || |||||||| || ||||| || |||| |||||| | | ||| || || | || Sbjct 1829 AGAATTCAAATATATCCGCATGCCAAGGCTCTAAATAAATTGCAAATGCGCCGGGACGTT 1888 Query 38168 TATCACCTCCCTGATTAATATATCTAACTGTGTTATTATATATTCTTAACATAGGTACTA 38227 | | || || |||| | |||||| | || || ||||| | ||| ||||| || |||| Sbjct 1889 TGTTTCCACCTTGATCTACATATCTGGCAGTATTGTTATACACTCTCAACATTGGCACTA 1948 Query 38228 TACCATTAGATTTGCCGTTTATACCGGATATATAAGTACCCTTAGCTCGTATATTACTTA 38287 |||||| || || || | || | ||| |||| ||||| ||||| || | | Sbjct 1949 GACCATTTGAGACCCCATTAGTGCCAGCTATGTAAGAACCCTGAGCTCTGATGCAATGTG 2008 Query 38288 TCGACAATCCTATTCCACCTGCATGTTTTGATATTAAAGCGCATTGTTTTAACGTATCAA 38347 | || ||||| ||||| ||| ||| || ||||| || ||||||||||| ||||||| Sbjct 2009 TATGTAAACCTATGCCACCAGCAGATTTAGAAATTAATGCACATTGTTTTAAAGTATCAA 2068 Query 38348 ATATACCTTCTATACTGTCATCCTTTATTGGTAGTATAAAACAACTAGACATTTGAGGCA 38407 | |||||||| || || || || || || | || | ||||| || | || ||| Sbjct 2069 AAATACCTTCAATGCTATCGTCTTTCATAGCTATAAGGAAACAGGAGGAAAGCTGTGGCC 2128 Query 38408 ATGGAGTTCCGGCGTTAAATAATGTAGGAGATGCATGTATGAACCATTTTTCCGACAAAT 38467 || || | ||| || | |||||| ||||||| | || |||| || |||| Sbjct 2129 GCGGTGTGGCTGCGGAGAACAGTGTAGGGCTTGCATGTGTAAAATATTTCTCTGACATCA 2188 Query 38468 AATTATATGTTTCTATTACATCATCTATATCACCGCCGTGAATACCTAGAGATACCCTCA 38527 |||||| || | ||| || ||| || || | || ||||| |||| || || |||| Sbjct 2189 TATTATAAGTATTGATTGCACTATCAATGTCTTCACCATGAATGCCTATGGAGACTCTCA 2248 Query 38528 TTAGCATATGTTGTGGTCTTTC 38549 | ||||| ||||| || ||||| Sbjct 2249 TAAGCATGTGTTGAGGCCTTTC 2270 >seq7533 Length=2710 Score = 136 bits (150), Expect = 4e-27 Identities = 170/229 (74%), Gaps = 8/229 (3%) Strand=Plus/Minus Query 11890 ATCTCTTACATATGTATCTATTAATAAACTATACATTTCTGAATGAATATTTTCCATAGC 11949 ||| |||| |||||| || ||||||||| ||||| |||||||||| |||||||||||| Sbjct 1032 ATCCCTTATATATGTGTCAATTAATAAAGAGTACATCTCTGAATGAACATTTTCCATAGC 973 Query 11950 TATTTGAAATCCATAGAAACATCGTGCCTCTGAACAC-TGTACATCCACATAAAATCTTT 12008 |||||||| |||||||| || | || || | ||| || || || |||| | | Sbjct 972 AATTTGAAAACCATAGAAGCACCTGGCTTCAG-TCACTTGAACCTCTTGTGAAAAACGCT 914 Query 12009 CCGCTAAATTCTCATTTACAATACCATCACTAGATGCAAAAAATGCTAGTATATGTTTTA 12068 || | || |||||||| |||||||||||| || ||||| ||||||| | ||| || | Sbjct 913 CCACCAAGTTCTCATTAACAATACCATCAGAAGCCGCAAAGAATGCTAAGACATGCTTGA 854 Query 12069 TAAAGTATTTTTC---GTCTTTAGTTAATTTATCCCAATCATCTAAATC 12114 |||| | ||| || |||| ||||| | |||||||| |||| || Sbjct 853 TAAAATGTTTCTCACAATCTT---TTAATGTCTCCCAATCTGCTAAGTC 808 Score = 114 bits (126), Expect = 1e-20 Identities = 152/209 (73%), Gaps = 3/209 (1%) Strand=Plus/Minus Query 11666 ATTAGTTCATTAGAAAATGTTAATCCGGGCATCAATCCTCGtttttttATCCAAAATATA 11725 || ||||||||| || || ||||||||||||| ||||||||||| | ||||||||| Sbjct 1845 ATAAGTTCATTACTGAAAGTCAATCCGGGCATCAGACCTCGTTTTTTCAACCAAAATATT 1786 Query 11726 GCAGCAAATGAACCAGAAAAGAATATTCCCTCCACAGCTGCAAATGCTACTACTCTTTCT 11785 | |||||| || || || ||||||||||| || |||||||| || | || | |||| Sbjct 1785 GAAGCAAAGCTGCCTGAGAAAAATATTCCCTCAACTGCTGCAAAAGCAATTATACGTTCT 1726 Query 11786 CC--ATATACCT-TGTTGCTAGATATCCATTTTCTGGCCCAATCAGCTTTCTTTTTTACG 11842 || || || || | ||||| ||||| | | ||||| || || ||||| || || Sbjct 1725 CCAAATGTAGCTGTCTTGCTGCCGATCCACTGTAACGCCCAGTCTGCCTTCTTCTTAACA 1666 Query 11843 CATTCCATTGTTTCTATAGCGTTAAATAA 11871 ||| | ||||| || || || ||||| Sbjct 1665 CATGGTAGAGTTTCAATTGCATTGAATAA 1637 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 466902046785520