Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Heliconius_20pachinus_20[genbank_20GCA_5F900068735.1_202017-04-26] 277,083 sequences; 279,264,790 total letters Query= NC_003391.1 Length=205719 Score E Sequences producing significant alignments: (Bits) Value seq13366 522 3e-143 seq7533 86.0 8e-12 >seq13366 Length=6323 Score = 522 bits (578), Expect = 3e-143 Identities = 1102/1623 (68%), Gaps = 43/1623 (3%) Strand=Plus/Plus Query 64819 TTATTTTATCCTTGTCCAATGTGAATTGAATGGGAGCGGATGCGGGTTTCGTACGTAGAT 64878 |||||||| | ||||| | || || ||||| | | | ||| ||||| || |||| | Sbjct 494 TTATTTTACCTTTGTCTACAGTAAACTGAATAGCATTTGCTGCTGGTTTTGTGCGTAAGT 553 Query 64879 AGTACATTCCCGTTTTTAGACCGAGACTCCATCCGTAAAAATGCATACTCGTTAGTTTGG 64938 |||||||||| ||||||| || | |||| ||| ||||| || ||| ||||| Sbjct 554 AGTACATTCCTGTTTTTAATCCCATTTTCCAAGCGTGGAAATGAATCGACGTAAGTTTTC 613 Query 64939 AATAACTCGGATCTGCTATATGGATATTCATAGATTGACTTTGATCGATGAAGGCTCCCC 64998 ||| | || | || | ||| || || | |||||||||||| || || || ||||| | Sbjct 614 CATAGTTAGGTTTAGCAACATGTATGTTAAAAGATTGACTTTGGTCTATAAAAGCTCCTC 673 Query 64999 TGTCTGCAGCCATTTTTATGATCGTCTTTTGTGGAATTTCCCAAATAGTTTTATA-AACT 65057 | || || ||||| | |||| || || ||| ||| ||||| | ||||| || || | Sbjct 674 TATCAGCTGCCATCTGTATGGATGTTTTCAGTGAAATCTCCCATACGGTTTTGTACAAAT 733 Query 65058 CGCTTAATATCTTCTGGAAGGTTTGTA--TTCT-GAATGGATCCACCATCTGCCATAATC 65114 | |||| | |||| |||| ||| | |||| | || |||||| | ||||| Sbjct 734 CTCTTATT-TCTTTAGGAATTTTTTCAATTTCTTGTATAGATCCATTGTTGTATATAATA 792 Query 65115 CTATTCTTGATCTCATCATTCCATAATTTTCTCTCGGTTAAAACTCTAAGGAGATGCGGA 65174 ||| || || || |||| ||| || | | || ||| | | || ||||| | Sbjct 793 AGATTTTTCATATCTTCATCCCACAAATCAGCCCGAGTCAAATCAGTCAGAAGATGATGG 852 Query 65175 TTAACTACTTGAAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGT 65234 || ||||| ||||||||||||| || ||||| | ||||||||| ||| | ||| Sbjct 853 TTCACTACAGGAAATTCTCCAGATAAGACTCTTCTTTGGTAAATATTTGATGTAAAGGGT 912 Query 65235 TCCACAGACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACC 65294 || | ||| ||| | || || | |||||| ||||| || |||||||||||||| || | | Sbjct 913 TCAAAAGATTCAGTGTTGCCAAGAATTTGTGCAGTAGAGGCAGTCGGCATAGGAGCTATC 972 Query 65295 AATAAACTATTTCTAAGACCGTATGTTCTG--ATTTTATCTTTTAGAGGTTCCCAATTCC 65352 |||| | ||| | | ||| ||||| || || || ||||| || |||| | || Sbjct 973 AATAGAGAATTGCGCAAACC--ATGTTTTGCTATCTTTTCTTTAAGGACAGCCCAGTCCC 1030 Query 65353 AAAGATCCGACGGTACAACNNNNNNNNNNNNNNNTTGTAGAATACCGTTACTGGC-GTAC 65411 |||| || | || || || ||||| | || || | || Sbjct 1031 AAAGGTCTGTAGGAGTTTTGTCCCACATATCATACTGGAGGATACCTTGGCTTGCTGGAC 1090 Query 65412 GATCCTACATATGTATCGTATGGTCCTTCCTTCTCAGCTAGTTCACAACTCGCCTCTAAT 65471 ||| |||||| ||||| ||||| || ||||||| ||||||||| || |||||| Sbjct 1091 TC-CCTTGATATGTGCTGTATGCACCTTCTTTTTCAGCTAATTCACAACTAGCTTCTAAT 1149 Query 65472 GCACCGTAATAAATGGTTTCGAAGATCTTCTTATTTAGATCTTGTGCTTCCAGGCTATCA 65531 ||||| |||||||| ||||| || || | | ||| ||| | ||||| | || || Sbjct 1150 GCACCATAATAAATTGTTTCAAATATTTGTTGATTGAGAAGTATTGCTTTCTCACTTTCG 1209 Query 65532 AATGGATAATTTAAGAGA-ATAAACGCGTCTGCTAATCCTTGAACACCAATACCGATAGG 65590 | | ||| | | | | | |||||| ||||| | || |||||||||||||| ||||| Sbjct 1210 TAAG-ATATTCTCATCAACACAAACGCATCTGCCATGCCCTGAACACCAATACCAATAGG 1268 Query 65591 TCTATGTCTCTTATTAGAGATTTCAGCTTCTGGAATAGGATAATAATTAATATCTATAAT 65650 |||||||||| |||| || ||| || || || | ||||||| |||||| ||| |||| Sbjct 1269 TCTATGTCTCATATTTGAAGTTTTTGCCTCAGGGACAGGATAAAAATTAACATCAATAAC 1328 Query 65651 TTTATTGAGATTTC---TGACAATTACTTTGACCACATCCTTCAGTTTGAGAAAATCAAA 65707 ||| || | |||| | ||||| ||||| | || || | ||| ||||| ||| Sbjct 1329 TTTGTTTAAATTTTGAGTTACAAT--CTTTGTG-ATTTCTTTTAATTTTTTAAAATTAAA 1385 Query 65708 TCGCTCATCTATTACAAACATGTTCAATGCAACAGATGCCAGATTACAAACGGCTACCTC 65767 || | || | ||||||||||| | ||| | || || || || || || || || || Sbjct 1386 TCTGTTATTTTCAACAAACATGTTAAGTGCTATGGAAGCAAGGTTGCACACTGCCACTTC 1445 Query 65768 ATTAGCATCCGCA---TATTGTATTATCTCAGTGCAAAGATTACTACACTTGATGGTTCC 65824 || | || | | ||||| | | ||||||||||||||| ||||| || || || || Sbjct 1446 AT---CTTCTGAAGTGTATTGCACAACCTCAGTGCAAAGATTGCTACATTTAATAGTGCC 1502 Query 65825 TAAATTTTGTTGATTACTCTTTTTGTTACACGCATCCTTATAAAGAATGAATGGAGTACC 65884 | ||||| ||||||||||||| ||||||| ||||||||||| | ||| |||| ||||| Sbjct 1503 AAGATTTTTTTGATTACTCTTTCTGTTACAAGCATCCTTATACAACATGTATGGTGTACC 1562 Query 65885 AGTTTCAATCTGAGATTCTATAATCGCTTTCCAGACGACTCGAGCCTTTATTATAGATTT 65944 ||| || | || | ||||||||| | ||||| | || |||| | | | | ||| Sbjct 1563 AGTCTCCACTTGGGCTTCTATAATTGACTTCCATAACTCTTGAGCTCTGACTT--GTTTT 1620 Query 65945 GTATCTCTTTTCTCTT--TCGTATAGTGTATACAATCGTTCGAACTCGTCTCCCCAAACA 66002 || || ||| |||| || ||| | ||| | | ||| || || ||||| || || Sbjct 1621 ATAAATCGTTTTTCTTCTTCATATTTGGCATATAGTTCTTCAAATTCCTCTCCA-AAGCA 1679 Query 66003 TTGTCCAAT-CCAGGACATTCATCCGGACACATCAACGACCACTCTCCGTCATCCTTC-- 66059 | | | |||||||| |||| |||||||| | ||| || |||||||| Sbjct 1680 GTCAGCGAGGCCAGGACAATCATGAGGACACATGAGACTCCAAACT---TCATCCTTTTC 1736 Query 66060 -ACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAAATCTCTGGTTCTATG 66118 |||| ||||||||| ||||| || ||||| | ||| ||| | ||||| | ||| Sbjct 1737 TACTCTTTTCATAAACAGATCTGGTATCCATAAAGCATAAAACAGTTCTCTAGCTCTCAT 1796 Query 66119 TTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCATAATGCCACGG 66178 ||| || || ||||| ||||| || | ||| | ||| | | ||||| |||||| || Sbjct 1797 TTCTTCCTTACCTGTGTTCTTCTTTAAATCCAAGAATTCAAATATATCCGCATGCCAAGG 1856 Query 66179 TTCCAAGTATATGGCCATAACTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGC 66238 || || || || || | | || || ||||||||||| || ||||||| ||||| || Sbjct 1857 CTCTAAATAAATTGCAAATGCGCCGGGACGTTTGTTTCCACCTTGATCTACATATCTGGC 1916 Query 66239 GGTGTTATTATAAACTCTCAACATTGGAATAATACCATTGGATGTACCATTGGTCCCGGA 66298 || || ||||| |||||||||||||| | | |||||| || ||||| || || | Sbjct 1917 AGTATTGTTATACACTCTCAACATTGGCACTAGACCATTTGAGACCCCATTAGTGCCAGC 1976 Query 66299 GATATAGCTTCCACTTGCACGAAT---ATTACTAATTGATAGACCTATTCCCCCTGCCAT 66355 || || || || | || || || || || |||||| || || || Sbjct 1977 TATGTAAGAACCCTGAGCTCTGATGCAATGTGTA--TG-TAAACCTATGCCACCAGCAGA 2033 Query 66356 TTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGATGCCCTCTATACTATCATCCAT 66415 |||||| |||||||| ||| ||||||| |||||| | || || || || ||||| || | Sbjct 2034 TTTAGAAATTAATGCACATTGTTTTAAAGTATCAAAAATACCTTCAATGCTATCGTCTTT 2093 Query 66416 CAT 66418 ||| Sbjct 2094 CAT 2096 Score = 102 bits (112), Expect = 1e-16 Identities = 89/111 (80%), Gaps = 0/111 (0%) Strand=Plus/Plus Query 66599 CTTGTTGTTTATTTTCAACAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTA 66658 ||| |||||||| |||||||| || ||| ||||||||||||| ||||||||||||||||| Sbjct 2609 CTTATTGTTTATCTTCAACAAATATGATCTTTCCAAAGTTTTGAAACCAAAATAGTTGTA 2668 Query 66659 TGAAAAGTCTCGTTCGTAAATAATAACCGAGTTGAGTTTATCCTTATATTT 66709 | ||| |||| || |||| ||| | |||| | ||| ||||| | ||| Sbjct 2669 TTTAAAATCTCTATCATAAACAATGGCAGAGTCTAATTTGTCCTTGTTTTT 2719 Score = 100 bits (110), Expect = 4e-16 Identities = 106/140 (76%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 66810 TTTTTTGTTTCTTTGTGTAGATTTGATACGGCTATTCTAGCGGCTATAATGGCATAATCC 66869 || || || ||||| |||| ||| |||| |||||||| || || | ||||||||||||| Sbjct 3380 TTCTTGGTGTCTTTATGTAAATTGGATATTGCTATTCTGGCAGCCAAAATGGCATAATCC 3439 Query 66870 GGATGTTGTGTAGTACAAGTGGCTGCTATTTCGGCTGCCAGAGTGTCCAATTCTACCGTT 66929 ||||| | ||| || ||| ||||||||||| || || ||| | || | || | ||| Sbjct 3440 GGATGATCTGTGGTCTTAGTAGCTGCTATTTCTGCAGCTAGATTATCAAGCTCAGCAGTT 3499 Query 66930 GTTACTCCATTATATATTCC 66949 ||||| ||| |||||| || Sbjct 3500 GTTACACCAGAATATATGCC 3519 >seq7533 Length=2710 Score = 86.0 bits (94), Expect = 8e-12 Identities = 76/95 (80%), Gaps = 0/95 (0%) Strand=Plus/Minus Query 36644 TTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATACATATTC 36703 ||||||| || |||||||| | |||||||| ||||| || || ||||||||||| | | Sbjct 680 TTAGATAAGTCTACTTCTTCTGCAGTCCAAAACGATGCTTCAGCTTTTTTATACATCTGC 621 Query 36704 CAGATGTCATGATATTGAATTGGAAAAATAACAAA 36738 || || || ||||||| ||||| || |||||||| Sbjct 620 CATATATCTGGATATTGGATTGGGAATATAACAAA 586 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 655893193825720