Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Heliconius_20pachinus_20[genbank_20GCA_5F900068735.1_202017-04-26] 277,083 sequences; 279,264,790 total letters Query= NC_004105.1 Length=209771 Score E Sequences producing significant alignments: (Bits) Value seq13366 540 1e-148 seq7533 109 7e-19 >seq13366 Length=6323 Score = 540 bits (598), Expect = 1e-148 Identities = 1098/1615 (68%), Gaps = 27/1615 (2%) Strand=Plus/Plus Query 70781 TTATTTTTTCCTTGTCCAATGTAAACTGAATGGGAGAGGATGCGGCTTTCGTACGTAGAT 70840 ||||||| | ||||| | ||||||||||| | | | ||| | ||| || |||| | Sbjct 494 TTATTTTACCTTTGTCTACAGTAAACTGAATAGCATTTGCTGCTGGTTTTGTGCGTAAGT 553 Query 70841 AGTACATGCCTGTTTTTAGACCGAGACTCCATCCGTAAAAATGCATACTCGTTAGTTTGG 70900 ||||||| |||||||||| || | |||| ||| ||||| || ||| ||||| Sbjct 554 AGTACATTCCTGTTTTTAATCCCATTTTCCAAGCGTGGAAATGAATCGACGTAAGTTTTC 613 Query 70901 AATAGCTAGGATCGGCTATGTGAATATTCATCGACTGACTTTGATCGATGAAGGCTCCCC 70960 |||| |||| | || | || || || | || |||||||| || || || ||||| | Sbjct 614 CATAGTTAGGTTTAGCAACATGTATGTTAAAAGATTGACTTTGGTCTATAAAAGCTCCTC 673 Query 70961 TGTCTGCAGCCATTTTTATGATCGTCTTTTGTGGAATTTCCCAAATAGTTTTATA-AACT 71019 | || || ||||| | |||| || || ||| ||| ||||| | ||||| || || | Sbjct 674 TATCAGCTGCCATCTGTATGGATGTTTTCAGTGAAATCTCCCATACGGTTTTGTACAAAT 733 Query 71020 CGCTTAATATCTTCTGGAAGGTTTGTA--TTCT-GAATGGATCCACCATCTGCA-ATAAT 71075 | |||| | |||| |||| ||| | |||| | || |||||| | || | ||||| Sbjct 734 CTCTTATT-TCTTTAGGAATTTTTTCAATTTCTTGTATAGATCCATTGT-TGTATATAAT 791 Query 71076 CCTATTTTTGATCTCTTCATTCCATAATTTTCTCTCGGTTAAAACTCTAAGGAGATGAGG 71135 |||||| || ||||||| ||| || | | || ||| | | || |||||| | Sbjct 792 AAGATTTTTCATATCTTCATCCCACAAATCAGCCCGAGTCAAATCAGTCAGAAGATGATG 851 Query 71136 ATTAACTACTTGAAATTCTCCAGACAATACTCTACGAGTGTAAATATTACTGGTATACGG 71195 || ||||| ||||||||||||| || ||||| | ||||||||| ||| | || Sbjct 852 GTTCACTACAGGAAATTCTCCAGATAAGACTCTTCTTTGGTAAATATTTGATGTAAAGGG 911 Query 71196 TTCCACTGACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCAC 71255 ||| | || ||| | || || | |||||| ||||| || |||||||||||||| || | Sbjct 912 TTCAAAAGATTCAGTGTTGCCAAGAATTTGTGCAGTAGAGGCAGTCGGCATAGGAGCTAT 971 Query 71256 CAATAGACTATTTCTAAGACCATGTGATCGGATTTTATCTTTTAGAGATTCCCAATTCCA 71315 ||||||| ||| | | ||||||| | || || ||||| || |||| | ||| Sbjct 972 CAATAGAGAATTGCGCAAACCATGTTTTGCTATCTTTTCTTTAAGGACAGCCCAGTCCCA 1031 Query 71316 AAGATCCGATGGTACAACNNNNNNNNNNNNNNNNNNNNNNATGCCGTTACTAGCGTATGA 71375 ||| || | || || || | || || Sbjct 1032 AAGGTCTGTAGGAGTTTTGTCCCACATATCATACTGGAGGATACCTTGGCTTGCTGGACT 1091 Query 71376 TCCTGCATATGTATCGTATGGTCCTTCTTTTTCGGCTAGTTCACAACTCGCCTCTAATGC 71435 ||| |||||| ||||| ||||||||||| |||| ||||||||| || |||||||| Sbjct 1092 CCCTTGATATGTGCTGTATGCACCTTCTTTTTCAGCTAATTCACAACTAGCTTCTAATGC 1151 Query 71436 TCCATAATAAATGGTTTCGAAAATCTTCTTATTGAGATCTTGTGCTTCCGGGCTATCAAA 71495 ||||||||||| ||||| || || | | ||||||| | ||||| | || || | Sbjct 1152 ACCATAATAAATTGTTTCAAATATTTGTTGATTGAGAAGTATTGCTTTCTCACTTTCGTA 1211 Query 71496 TGGATAATTTAAGAGA-ATAAACGCGTCTGCTAATCCTTGAACGCCAATACCGATAGGTC 71554 | ||| | | | | | |||||| ||||| | || ||||| |||||||| ||||||| Sbjct 1212 AG-ATATTCTCATCAACACAAACGCATCTGCCATGCCCTGAACACCAATACCAATAGGTC 1270 Query 71555 TGTGTCTCTTATTAGAAATTTCAGCTTCTGGAATAGGATAATAATTAATATCTATAATTT 71614 | |||||| |||| ||| ||| || || || | ||||||| |||||| ||| |||| || Sbjct 1271 TATGTCTCATATTTGAAGTTTTTGCCTCAGGGACAGGATAAAAATTAACATCAATAACTT 1330 Query 71615 TATTGAGATTTCTGACTATTA--CTTTGACCACATCCTTTAGTTTGAGAAAATCAAATCT 71672 | || | |||| ||| | | ||||| | || |||| ||| ||||| |||||| Sbjct 1331 TGTTTAAATTT-TGAGTTACAATCTTTGTG-ATTTCTTTTAATTTTTTAAAATTAAATCT 1388 Query 71673 CCCATCTATTACAAACACGTTCAAGGCAACAGATGCCAGATTACAAACGGCTACCTCATT 71732 || | ||||||| ||| | || | || || || || || || || || |||| Sbjct 1389 GTTATTTTCAACAAACATGTTAAGTGCTATGGAAGCAAGGTTGCACACTGCCACTTCAT- 1447 Query 71733 AGCATCGGCA---TATTGTATAATTTCAGTGCAAAGATTACTACACTTGATGGTTCCTAA 71789 | || | | ||||| | || |||||||||||||| ||||| || || || || | Sbjct 1448 --CTTCTGAAGTGTATTGCACAACCTCAGTGCAAAGATTGCTACATTTAATAGTGCCAAG 1505 Query 71790 ATTTTGTTGATTACTCTTTTTGTTACACGCATCCTTATAAAGAATAAACGGAGTACCAGT 71849 ||||| ||||||||||||| ||||||| ||||||||||| | || | || |||||||| Sbjct 1506 ATTTTTTTGATTACTCTTTCTGTTACAAGCATCCTTATACAACATGTATGGTGTACCAGT 1565 Query 71850 TTCAATCTGAGATTCTATAATCGCTTTCCAGACGACTCGAGCCTTTATTATATTCTTGTA 71909 || | || | ||||||||| | ||||| | || |||| | | | || | | Sbjct 1566 CTCCACTTGGGCTTCTATAATTGACTTCCATAACTCTTGAGCTCTGACTTGTTTTATAAA 1625 Query 71910 TCTCTTTTCTCTTTCGTATTGTGTATATAATCGTTCGAACTCGTCTCCCCAAGCATTGT- 71968 || |||||| ||| |||| | ||||| | ||| || || ||||| ||||| | Sbjct 1626 TCGTTTTTCTTCTTCATATTTGGCATATAGTTCTTCAAATTCCTCTCCA-AAGCAGTCAG 1684 Query 71969 CTAATCCAGGACATTCATTCGGACACATCAATGACCACTCTCCATCATCATTTACTCGTT 72028 | | |||||||| |||| |||||||| | ||| || |||| | | ||||| || Sbjct 1685 CGAGGCCAGGACAATCATGAGGACACATGAGACTCCAAACTTCATCCTTTTCTACTCTTT 1744 Query 72029 TCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATGCTCCTCGT 72088 ||||||| ||||| || ||||| | ||| ||| || ||||| | ||| || || | Sbjct 1745 TCATAAACAGATCTGGTATCCATAAAGCATAAAACAGTTCTCTAGCTCTCATTTCTTCCT 1804 Query 72089 TTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGT 72148 | ||||| ||||| || | ||| | ||| | | ||||| | |||||| || || || | Sbjct 1805 TACCTGTGTTCTTCTTTAAATCCAAGAATTCAAATATATCCGCATGCCAAGGCTCTAAAT 1864 Query 72149 ATATGGCCATAACTCCCGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTAT 72208 | || || | | || || ||||||||||| || ||||||| ||||| || || || | Sbjct 1865 AAATTGCAAATGCGCCGGGACGTTTGTTTCCACCTTGATCTACATATCTGGCAGTATTGT 1924 Query 72209 TATAAACTCTCAACATTGGAATAATACCATTGGATGCACCATTGGTCCCGGAGATATAGC 72268 |||| |||||||||||||| | | |||||| || | ||||| || || | || || Sbjct 1925 TATACACTCTCAACATTGGCACTAGACCATTTGAGACCCCATTAGTGCCAGCTATGTAAG 1984 Query 72269 TTCCACTG-GCACGAAT--ATTGCTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGA 72325 || ||| || | || | || || || |||||| || || || |||||| | Sbjct 1985 AACC-CTGAGCTCTGATGCAATGTGTAT--GTAAACCTATGCCACCAGCAGATTTAGAAA 2041 Query 72326 TTAATGCGCATCGTTTTAACGTATCATAGATGCCCTCTATACTATCATCCATCAT 72380 ||||||| ||| ||||||| |||||| | || || || || ||||| || |||| Sbjct 2042 TTAATGCACATTGTTTTAAAGTATCAAAAATACCTTCAATGCTATCGTCTTTCAT 2096 Score = 100 bits (110), Expect = 4e-16 Identities = 106/140 (76%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 72772 TTTTTTGTTTCCTTGTGTAGATTTGATACGGCTATTCTGGCGGCTAGAATGGCATAATCT 72831 || || || || || |||| ||| |||| ||||||||||| || | |||||||||||| Sbjct 3380 TTCTTGGTGTCTTTATGTAAATTGGATATTGCTATTCTGGCAGCCAAAATGGCATAATCC 3439 Query 72832 GGATGTTGTGTAGTACAAGTGGCTGCTATTTCTGCTGCCAGAGTGTCCAATTCTACCGTT 72891 ||||| | ||| || ||| |||||||||||||| || ||| | || | || | ||| Sbjct 3440 GGATGATCTGTGGTCTTAGTAGCTGCTATTTCTGCAGCTAGATTATCAAGCTCAGCAGTT 3499 Query 72892 GTTACTCCATTATATATTCC 72911 ||||| ||| |||||| || Sbjct 3500 GTTACACCAGAATATATGCC 3519 Score = 93.3 bits (102), Expect = 6e-14 Identities = 87/111 (78%), Gaps = 0/111 (0%) Strand=Plus/Plus Query 72561 CTTGTTATTTATTTTCAACAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTA 72620 ||| || ||||| |||||||| || ||| ||||||||||||| ||||||||||||||||| Sbjct 2609 CTTATTGTTTATCTTCAACAAATATGATCTTTCCAAAGTTTTGAAACCAAAATAGTTGTA 2668 Query 72621 TGAAAAGTCTCGTTCGTAAATAATAACCGAATTGAGTTTATCCTTATATTT 72671 | ||| |||| || |||| ||| | || | | ||| ||||| | ||| Sbjct 2669 TTTAAAATCTCTATCATAAACAATGGCAGAGTCTAATTTGTCCTTGTTTTT 2719 >seq7533 Length=2710 Score = 109 bits (120), Expect = 7e-19 Identities = 89/108 (82%), Gaps = 0/108 (0%) Strand=Plus/Minus Query 42551 TTAGATATATCTACTTCTTCTACCGTCCAAAATGATGCTTCTGCCTTTTTATACATATTC 42610 ||||||| |||||||||||| | |||||||| |||||||| || ||||||||||| | | Sbjct 680 TTAGATAAGTCTACTTCTTCTGCAGTCCAAAACGATGCTTCAGCTTTTTTATACATCTGC 621 Query 42611 CAGATATCATGATATTGAATTGGGAAAATAACAAATCTATTTGGATTT 42658 || ||||| ||||||| |||||||| |||||||| | | |||||| Sbjct 620 CATATATCTGGATATTGGATTGGGAATATAACAAAACGTCTAGGATTT 573 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 668814684213080