Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Heliconius_20pachinus_20[genbank_20GCA_5F900068735.1_202017-04-26]
277,083 sequences; 279,264,790 total letters
Query= NC_004117.1
Length=158482
Score E
Sequences producing significant alignments: (Bits) Value
seq10526 237 2e-57
seq28654 123 3e-23
seq76306 113 5e-20
seq27512 107 2e-18
seq27511 98.7 1e-15
seq41046 96.9 4e-15
>seq10526
Length=5062
Score = 237 bits (262), Expect = 2e-57
Identities = 477/693 (69%), Gaps = 22/693 (3%)
Strand=Plus/Plus
Query 19402 CCGACGTTGGGGTTCGCGCCATTGCCGCCTGGAAACTCCCAATCGATATCGACGCCATCG 19461
|||| || ||||| || || ||||| || || ||||||||||||||||| || ||||||
Sbjct 3624 CCGAGGTCAGGGTTAGCACCTTTGCCACCAGGGAACTCCCAATCGATATCAACACCATCG 3683
Query 19462 AAGAATTTCCACGTTTCTAGATACTCTTGGACCGAATCGATAAA-CGTCTGCCGTACGCT 19520
||||||||||| ||| ||| |||| | || || | | ||| ||| | | | | |
Sbjct 3684 AAGAATTTCCATGTTAGAAGAAACTCCTTTACTGACTGCACAAATCGTGTTCTCTTAGAT 3743
Query 19521 CTTGTCGTGCATATGGTAAAATGGGTCCGAAAGTGTCCAGCCCCCGATCGAAGGTAGCAC 19580
||||| | | | | || || || | ||| ||||| || || || || || || |
Sbjct 3744 -TTGTCAACTAAAAAGAAGAAAGGATCGGCAAGCGTCCACCCACCAATAGAGGGAAGAAT 3802
Query 19581 TTTTAGATGAGGGTTCGCCAATTTGGCTGCCATAAGTTGGCCAAAGTTGCCTTTGTACGG 19640
|| | | |||| || ||| || ||| | ||||||||||||||||||||| ||
Sbjct 3803 CTTCAATTCAGGGCGGGCTTGTTTTAGTGACATTAATTGGCCAAAGTTGCCTTTGTAGGG 3862
Query 19641 TTCGTTCCATGCGCTGACA--CCTTTTTGGGGTTTCTGTATGGCCGCCCAAGGATCGTGA 19698
||||||||| | |||| |||||||| ||||| |||| || ||||| ||||||||
Sbjct 3863 CTCGTTCCAT--GAAGACAATCCTTTTTGTGGTTTTTGTAATGCTGCCCATGGATCGTGG 3920
Query 19699 ATGGCCACTTTGAAGTCGGCACGACCGGCACACGAACGTTGCAACGCTTCGAAACTGCCC 19758
|| | ||||||||||| |||| ||| ||| || || || | |||| |||||||||
Sbjct 3921 ATTGAGACTTTGAAGTCCTCACGGCCGCTACAGGATCGCTGTAGTGCTTGGAAACTGCCT 3980
Query 19759 GGGACAGTTTTGAGGGCATCATTGATGCCGTCGCCACCGCACATGGGCACGAAACCGTAC 19818
|| ||| | |||||| |||||||| || ||||| || || | || |||||
Sbjct 3981 TCGATCTCTTTTAAACTATCATTAATGCCGTCACCGCCGCAAATTGGAATAAAGCCGTAG 4040
Query 19819 AACAAATGCGACAAGTTCGGTGTGGGCACTTTATCGACGGGAAACTGTCGCGGATACACA 19878
| |||||| | | || ||| | || | ||| ||||| || | | ||||| |||
Sbjct 4041 AGCAAATGAGTAAGATTAGGTATAGGTATACGATCCACGGGGAATTTCCTAGGATAGACA 4100
Query 19879 CCCCATTCGACAAAGTATGCACCTATGATCTTGTCCGAGCGCTTT--TCGAACCGTTTAT 19936
|||||||| || ||||| ||||| | | ||| ||| || ||| | |||| | ||||
Sbjct 4101 CCCCATTCTACGAAGTAGGCACCCA-CAACTTTTCC-AGATGTTTGCTTGAACGGCTTAT 4158
Query 19937 TGTTTTCGAGATAATCGTAGA--CGAGCGGTTCGAGATGCGATCCGTCCGTGTCGGCTAC 19994
| ||||| ||| ||| | | || || | ||| ||| || || ||||| ||
Sbjct 4159 TTTTTTC-TCCCAAT-GTATATTCCAGAGGAGGTAAATGACTTCCATCGGTATCGGCCAC 4216
Query 19995 GACAACTTTAACCGGTGCGCT-AGTCGAA---CAGCCGTCGACGTTGCACAGTTTCACAG 20050
||||| || ||||| | | | | ||| |||||||| | ||||| || | ||| |
Sbjct 4217 GACAATTT----CGGTGGGATCACTTGAACTGCAGCCGTCTTCATTGCAAAGCTCCACTG 4272
Query 20051 TCATATCGTACTTGCCGCCCTTAGTAACGGGAA 20083
|||| | ||| | || || || | ||||||||
Sbjct 4273 TCATTTGGTATCTTCCACCTTTCGAAACGGGAA 4305
>seq28654
Length=3315
Score = 123 bits (136), Expect = 3e-23
Identities = 164/228 (72%), Gaps = 0/228 (0%)
Strand=Plus/Plus
Query 142958 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 143017
|| ||||| | ||||| |||||||||| ||||| |||||||| |||||||| || |
Sbjct 1476 CCACCTCGCAGACGCAGTACTAAATGAAGGGTAGACTCTTTTTGGATGTTGTAGTCAGAC 1535
Query 143018 ATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 143077
| |||| ||||| || || || |||||| |||| |||||||| ||||| || ||
Sbjct 1536 AGGGTGCGACCATCTTCTAGCTGCTTGCCAGCAAAGATAAGACGTTGTTGATCTGGGGGA 1595
Query 143078 ATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACT 143137
|| || ||||| || ||| || |||| | ||| | ||||| | || || ||
Sbjct 1596 ATACCCTCTTTATCTTGAATCTTAGCCTTTACATTTTCAATGGTGTCAGATGGCTCCACC 1655
Query 143138 TCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCATA 143185
|| | ||| | |||||||| || | ||| || || ||||||||||||
Sbjct 1656 TCCAGAGTTATAGTCTTGCCTGTTAGTGTCTTGACAAATATTTGCATA 1703
Score = 123 bits (136), Expect = 3e-23
Identities = 164/228 (72%), Gaps = 0/228 (0%)
Strand=Plus/Plus
Query 142958 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 143017
|| |||| |||||| | ||||| || | |||||||||||||| |||||||| || |
Sbjct 1932 CCACCTCTTAAACGAAGTACTAAGTGCAAAGTAGATTCTTTTTGGATGTTGTAGTCAGAC 1991
Query 143018 ATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 143077
| ||| | ||||| | ||| || || ||| | || |||||||| ||||| |||||
Sbjct 1992 AGTGTACGACCATCTTCTAATTGCTTGCCCGCAAAAATAAGACGTTGTTGATCCGGAGGA 2051
Query 143078 ATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACT 143137
|||||||||||||| ||||| ||| | | ||| | ||||| | | ||| |||
Sbjct 2052 ATGCCTTCTTTGTCTTGGATTTTAGCTTTCACATTTTCAATTGTGTCAGAAGCTTCAACT 2111
Query 143138 TCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCATA 143185
|| | ||| | || || || || | |||||| || || |||||||||
Sbjct 2112 TCTAAAGTAATTGTTTTTCCAGTGAGTGTTTTAACAAAGATTTGCATA 2159
Score = 113 bits (124), Expect = 5e-20
Identities = 161/227 (71%), Gaps = 0/227 (0%)
Strand=Plus/Plus
Query 142958 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 143017
|||||||| | ||| | || || |||| || || ||||| || || ||||| || |
Sbjct 1020 CCTCCTCGGAGACGGAGTACCAAGTGAAGGGTCGACTCTTTCTGGATATTGTAGTCAGAC 1079
Query 143018 ATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 143077
| |||| ||||| |||||||||||||| |||| |||||||| ||||| |||||
Sbjct 1080 AGGGTGCGGCCATCTTCCAGTTGTTTACCAGCGAAGATAAGACGTTGTTGATCTGGAGGA 1139
Query 143078 ATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACT 143137
|| ||||| || || ||| || ||| | | ||| | ||||| | || || |||
Sbjct 1140 ATTCCTTCCTTATCTTGAATCTTAGCTTTAACATTTTCAATGGTGTCTGATGGCTCAACT 1199
Query 143138 TCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCAT 143184
|| | ||| | || || || || | |||||| || |||||||||||
Sbjct 1200 TCCAAAGTTATTGTTTTTCCAGTAAGTGTTTTGACAAATATTTGCAT 1246
Score = 113 bits (124), Expect = 5e-20
Identities = 161/227 (71%), Gaps = 0/227 (0%)
Strand=Plus/Plus
Query 142958 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 143017
|| || || | |||||| || || |||| |||||||||||||| || || || ||
Sbjct 2388 CCACCACGAAGACGCAATACCAAGTGAAGAGTAGATTCTTTTTGAATATTATAGTCAGAA 2447
Query 143018 ATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 143077
| |||| |||||| | ||| || ||||| | |||| |||||| ||||| |||||
Sbjct 2448 AGAGTGCGTCCGTCTTCCAATTGCTTTCCAGCGAAAATCAAACGTTGTTGATCTGGAGGA 2507
Query 143078 ATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACT 143137
|||||||| ||||| |||||| ||||| | ||| | || || | ||||| |||
Sbjct 2508 ATGCCTTCCTTGTCTTGAATTTTGGCTTTTACATTTTCAATAGTATCGGAAGGTTCAACT 2567
Query 143138 TCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCAT 143184
|| | ||| | || || || || | |||||| || || || |||||
Sbjct 2568 TCCAAAGTAATGGTTTTACCCGTAAGTGTTTTCACAAAGATCTGCAT 2614
Score = 96.9 bits (106), Expect = 4e-15
Identities = 158/228 (69%), Gaps = 0/228 (0%)
Strand=Plus/Plus
Query 142958 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 143017
|| || || | ||| | ||||| || | || || ||||| || || |||||||| |
Sbjct 1248 CCACCACGGAGACGAAGCACTAAGTGCAGGGTTGACTCTTTCTGAATATTGTAATCAGAC 1307
Query 143018 ATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 143077
| |||| ||||| | ||| || |||||| | || ||||| || || || || ||
Sbjct 1308 AAAGTGCGACCATCTTCCAATTGCTTTCCAGCAAAAATGAGACGCTGTTGGTCTGGGGGG 1367
Query 143078 ATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACT 143137
||||| || || || ||||| ||| | | || | ||||| | |||||||||
Sbjct 1368 ATGCCCTCCTTATCCTGTATTTTAGCTTTGACATTCTCGATTGTGTCAGATGGTTCTACT 1427
Query 143138 TCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCATA 143185
|| | || | ||||| || ||||||||||| || ||||||||||||
Sbjct 1428 TCCAGGGTAATGGTCTTTCCAGTCAATGTTTTGACAAATATTTGCATA 1475
Score = 84.2 bits (92), Expect = 2e-11
Identities = 157/231 (68%), Gaps = 0/231 (0%)
Strand=Plus/Plus
Query 142958 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 143017
|||||||||||||| || || || || | || || ||||| || || || || ||
Sbjct 792 CCTCCTCGTAAACGTAATACCAAGTGCAAAGTGGACTCTTTCTGAATATTATAGTCAGAG 851
Query 143018 ATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 143077
| || | || || || || || ||||| | || |||||||| ||||| || ||
Sbjct 852 AGAGTACGGCCATCCTCCAGCTGCTTGCCAGCGAAAATGAGACGTTGTTGATCTGGGGGA 911
Query 143078 ATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACT 143137
|| || |||||||| || || ||| | | ||| | ||||| | |||||| |||
Sbjct 912 ATACCCTCTTTGTCTTGGATCTTAGCTTTAACATTTTCAATAGTGTCTGAGGGTTCAACT 971
Query 143138 TCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCATAGCT 143188
|| | || | || || || |||| ||| ||||| || || |||||| ||
Sbjct 972 TCTAATGTGATAGTTTTCCCTGTCAGTGTCTTTACAAAGATCTGCATACCT 1022
>seq76306
Length=316
Score = 113 bits (124), Expect = 5e-20
Identities = 161/227 (71%), Gaps = 0/227 (0%)
Strand=Plus/Minus
Query 142958 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 143017
|| || | || |||||||||||| || | |||||||| || || || || || || |
Sbjct 283 CCACCCCTTAGACGCAAAACTAAGTGCAAAGTAGATTCCTTCTGGATATTATAGTCTGAC 224
Query 143018 ATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 143077
| ||||| | ||||| ||||| || || || | ||||| | ||| ||||| |||||
Sbjct 223 AATGTGCGCCCATCTTCCAGTTGCTTTCCGGCGAAAATCAGTCTTTGTTGATCTGGAGGA 164
Query 143078 ATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACT 143137
|||||||| ||||| ||| ||| |||| | ||| | || || | | ||| |||
Sbjct 163 ATGCCTTCCTTGTCTTGAATCTTTGCCTTTACGTTTTCGATTGTATCAGAAGCTTCCACT 104
Query 143138 TCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCAT 143184
|| | || | || || || || || ||||||||||| ||||||||
Sbjct 103 TCCAATGTGATGGTTTTCCCAGTTAAAGTTTTTACGAAGATTTGCAT 57
>seq27512
Length=242
Score = 107 bits (118), Expect = 2e-18
Identities = 162/228 (71%), Gaps = 2/228 (1%)
Strand=Plus/Plus
Query 142958 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 143017
|| |||| | ||| | |||||||| | ||||||||||| || || ||||| ||
Sbjct 1 CCACCTCTCAGACGAAGTACTAAATGTAAAGTAGATTCTTTCTGAATATTGTAGTCTGAT 60
Query 143018 ATTGTGC-TCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGG 143076
| ||| | || | || || || || || |||||| | || || | ||| || || |||||
Sbjct 61 AGTGTACGTCCA-TCCTCAAGCTGCTTTCCAGCAAAAATAAGCCTTTGTTGGTCTGGAGG 119
Query 143077 TATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTAC 143136
|||||||| || || ||||||| || | | ||| | ||||| | ||| || ||
Sbjct 120 AATGCCTTCCTTATCTTGAATTTTTGCCTTAACATTTTCGATTGTGTCAGAGGGCTCAAC 179
Query 143137 TTCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCAT 143184
||| | || | |||||||| |||| ||| ||||| |||||||||||
Sbjct 180 TTCCAGTGTGATAGTCTTGCCAGTCAGTGTCTTTACAAATATTTGCAT 227
>seq27511
Length=800
Score = 98.7 bits (108), Expect = 1e-15
Identities = 135/186 (73%), Gaps = 2/186 (1%)
Strand=Plus/Minus
Query 142988 GTAGATTCTTTTTGTATGTTGTAATCGCTCATTGTGC-TCGAGTCTTCGAGTTGTTTACC 143046
||||||||||| || ||||||||||| | ||||| || | ||||| || || || ||
Sbjct 185 GTAGATTCTTTCTGAATGTTGTAATCAGATAGTGTGCGTCCA-TCTTCAAGCTGCTTTCC 127
Query 143047 AGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTAATTTTTTGTTT 143106
|||| | || || | ||||||||| || || || || ||||| || ||||||| |||
Sbjct 126 AGCAAAAATAAGTCTTTGCTGATCTGGGGGAATTCCCTCTTTATCCTGAATTTTTGCTTT 67
Query 143107 TAGCTGTTCCACCGTGTCCGTGGGTTCTACTTCAACAGTCACCGTCTTGCCGGTCAATGT 143166
| | ||| | || || | || || ||||| | ||| | |||||||| |||| |||
Sbjct 66 AACATTTTCAATTGTATCAGAAGGCTCAACTTCCAAAGTGATAGTCTTGCCAGTCAGTGT 7
Query 143167 TTTTAC 143172
|||||
Sbjct 6 CTTTAC 1
Score = 89.7 bits (98), Expect = 5e-13
Identities = 151/216 (70%), Gaps = 2/216 (1%)
Strand=Plus/Minus
Query 142970 CGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTCATTGTGC-TCGA 143028
|||| || || || | |||||||| || || || || ||||| || ||| | || |
Sbjct 431 CGCAGCACCAAGTGCAAAGTAGATTCCTTCTGAATATTATAATCTGACAATGTACGTCCA 372
Query 143029 GTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTT 143088
||||| || ||||| || ||| | || || | || || || ||||| |||||||||||
Sbjct 371 -TCTTCCAGCTGTTTTCCTGCAAAAATAAGCCTCTGTTGGTCAGGAGGAATGCCTTCTTT 313
Query 143089 GTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACTTCAACAGTCAC 143148
||| ||| ||| || | | ||| | || || | | ||| ||||| | ||| |
Sbjct 312 GTCTTGAATCTTTGCCTTAACATTTTCTATTGTATCAGAAGCTTCCACTTCCAAAGTGAT 253
Query 143149 CGTCTTGCCGGTCAATGTTTTTACGAATATTTGCAT 143184
|| ||||| |||| ||| ||||| || ||||||||
Sbjct 252 AGTTTTGCCAGTCAGTGTCTTTACAAAAATTTGCAT 217
>seq41046
Length=7774
Score = 96.9 bits (106), Expect = 4e-15
Identities = 161/229 (70%), Gaps = 3/229 (1%)
Strand=Plus/Plus
Query 142958 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 143017
||||| || | || | || | ||| | ||| ||||| ||||| |||||||| || |
Sbjct 7155 CCTCCGCGAAGTCGAAGCACAAGATGCAATGTGGATTCCTTTTGAATGTTGTAGTCAGAC 7214
Query 143018 ATTGTGC-TCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGG 143076
| ||| | || | ||||| ||||||||||||||| |||||| ||||||||| || || ||
Sbjct 7215 AATGTACGTCCA-TCTTCTAGTTGTTTACCAGCAAAGATCAAACGTTGCTGGTCTGGTGG 7273
Query 143077 TATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGC-TGTTCCACCGTGTCCGTGGGTTCTA 143135
|| ||||| || || ||||| ||||| | | ||| | || || | || || |
Sbjct 7274 AATACCTTCCTTATCTTGGATTTTAGCTTTTAACATTTTCTATAGTATCAGAGGCCTCCA 7333
Query 143136 CTTCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCAT 143184
| || | || | || || || || | || || ||||| ||||||||
Sbjct 7334 CCTCGAGGGTAATGGTTTTACCCGTAAGGGTCTTGACGAAAATTTGCAT 7382
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 505258336612560
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |