Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Heliconius_20pachinus_20[genbank_20GCA_5F900068735.1_202017-04-26] 277,083 sequences; 279,264,790 total letters Query= NC_004117.1 Length=158482 Score E Sequences producing significant alignments: (Bits) Value seq10526 237 2e-57 seq28654 123 3e-23 seq76306 113 5e-20 seq27512 107 2e-18 seq27511 98.7 1e-15 seq41046 96.9 4e-15 >seq10526 Length=5062 Score = 237 bits (262), Expect = 2e-57 Identities = 477/693 (69%), Gaps = 22/693 (3%) Strand=Plus/Plus Query 19402 CCGACGTTGGGGTTCGCGCCATTGCCGCCTGGAAACTCCCAATCGATATCGACGCCATCG 19461 |||| || ||||| || || ||||| || || ||||||||||||||||| || |||||| Sbjct 3624 CCGAGGTCAGGGTTAGCACCTTTGCCACCAGGGAACTCCCAATCGATATCAACACCATCG 3683 Query 19462 AAGAATTTCCACGTTTCTAGATACTCTTGGACCGAATCGATAAA-CGTCTGCCGTACGCT 19520 ||||||||||| ||| ||| |||| | || || | | ||| ||| | | | | | Sbjct 3684 AAGAATTTCCATGTTAGAAGAAACTCCTTTACTGACTGCACAAATCGTGTTCTCTTAGAT 3743 Query 19521 CTTGTCGTGCATATGGTAAAATGGGTCCGAAAGTGTCCAGCCCCCGATCGAAGGTAGCAC 19580 ||||| | | | | || || || | ||| ||||| || || || || || || | Sbjct 3744 -TTGTCAACTAAAAAGAAGAAAGGATCGGCAAGCGTCCACCCACCAATAGAGGGAAGAAT 3802 Query 19581 TTTTAGATGAGGGTTCGCCAATTTGGCTGCCATAAGTTGGCCAAAGTTGCCTTTGTACGG 19640 || | | |||| || ||| || ||| | ||||||||||||||||||||| || Sbjct 3803 CTTCAATTCAGGGCGGGCTTGTTTTAGTGACATTAATTGGCCAAAGTTGCCTTTGTAGGG 3862 Query 19641 TTCGTTCCATGCGCTGACA--CCTTTTTGGGGTTTCTGTATGGCCGCCCAAGGATCGTGA 19698 ||||||||| | |||| |||||||| ||||| |||| || ||||| |||||||| Sbjct 3863 CTCGTTCCAT--GAAGACAATCCTTTTTGTGGTTTTTGTAATGCTGCCCATGGATCGTGG 3920 Query 19699 ATGGCCACTTTGAAGTCGGCACGACCGGCACACGAACGTTGCAACGCTTCGAAACTGCCC 19758 || | ||||||||||| |||| ||| ||| || || || | |||| ||||||||| Sbjct 3921 ATTGAGACTTTGAAGTCCTCACGGCCGCTACAGGATCGCTGTAGTGCTTGGAAACTGCCT 3980 Query 19759 GGGACAGTTTTGAGGGCATCATTGATGCCGTCGCCACCGCACATGGGCACGAAACCGTAC 19818 || ||| | |||||| |||||||| || ||||| || || | || ||||| Sbjct 3981 TCGATCTCTTTTAAACTATCATTAATGCCGTCACCGCCGCAAATTGGAATAAAGCCGTAG 4040 Query 19819 AACAAATGCGACAAGTTCGGTGTGGGCACTTTATCGACGGGAAACTGTCGCGGATACACA 19878 | |||||| | | || ||| | || | ||| ||||| || | | ||||| ||| Sbjct 4041 AGCAAATGAGTAAGATTAGGTATAGGTATACGATCCACGGGGAATTTCCTAGGATAGACA 4100 Query 19879 CCCCATTCGACAAAGTATGCACCTATGATCTTGTCCGAGCGCTTT--TCGAACCGTTTAT 19936 |||||||| || ||||| ||||| | | ||| ||| || ||| | |||| | |||| Sbjct 4101 CCCCATTCTACGAAGTAGGCACCCA-CAACTTTTCC-AGATGTTTGCTTGAACGGCTTAT 4158 Query 19937 TGTTTTCGAGATAATCGTAGA--CGAGCGGTTCGAGATGCGATCCGTCCGTGTCGGCTAC 19994 | ||||| ||| ||| | | || || | ||| ||| || || ||||| || Sbjct 4159 TTTTTTC-TCCCAAT-GTATATTCCAGAGGAGGTAAATGACTTCCATCGGTATCGGCCAC 4216 Query 19995 GACAACTTTAACCGGTGCGCT-AGTCGAA---CAGCCGTCGACGTTGCACAGTTTCACAG 20050 ||||| || ||||| | | | | ||| |||||||| | ||||| || | ||| | Sbjct 4217 GACAATTT----CGGTGGGATCACTTGAACTGCAGCCGTCTTCATTGCAAAGCTCCACTG 4272 Query 20051 TCATATCGTACTTGCCGCCCTTAGTAACGGGAA 20083 |||| | ||| | || || || | |||||||| Sbjct 4273 TCATTTGGTATCTTCCACCTTTCGAAACGGGAA 4305 >seq28654 Length=3315 Score = 123 bits (136), Expect = 3e-23 Identities = 164/228 (72%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 142958 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 143017 || ||||| | ||||| |||||||||| ||||| |||||||| |||||||| || | Sbjct 1476 CCACCTCGCAGACGCAGTACTAAATGAAGGGTAGACTCTTTTTGGATGTTGTAGTCAGAC 1535 Query 143018 ATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 143077 | |||| ||||| || || || |||||| |||| |||||||| ||||| || || Sbjct 1536 AGGGTGCGACCATCTTCTAGCTGCTTGCCAGCAAAGATAAGACGTTGTTGATCTGGGGGA 1595 Query 143078 ATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACT 143137 || || ||||| || ||| || |||| | ||| | ||||| | || || || Sbjct 1596 ATACCCTCTTTATCTTGAATCTTAGCCTTTACATTTTCAATGGTGTCAGATGGCTCCACC 1655 Query 143138 TCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCATA 143185 || | ||| | |||||||| || | ||| || || |||||||||||| Sbjct 1656 TCCAGAGTTATAGTCTTGCCTGTTAGTGTCTTGACAAATATTTGCATA 1703 Score = 123 bits (136), Expect = 3e-23 Identities = 164/228 (72%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 142958 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 143017 || |||| |||||| | ||||| || | |||||||||||||| |||||||| || | Sbjct 1932 CCACCTCTTAAACGAAGTACTAAGTGCAAAGTAGATTCTTTTTGGATGTTGTAGTCAGAC 1991 Query 143018 ATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 143077 | ||| | ||||| | ||| || || ||| | || |||||||| ||||| ||||| Sbjct 1992 AGTGTACGACCATCTTCTAATTGCTTGCCCGCAAAAATAAGACGTTGTTGATCCGGAGGA 2051 Query 143078 ATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACT 143137 |||||||||||||| ||||| ||| | | ||| | ||||| | | ||| ||| Sbjct 2052 ATGCCTTCTTTGTCTTGGATTTTAGCTTTCACATTTTCAATTGTGTCAGAAGCTTCAACT 2111 Query 143138 TCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCATA 143185 || | ||| | || || || || | |||||| || || ||||||||| Sbjct 2112 TCTAAAGTAATTGTTTTTCCAGTGAGTGTTTTAACAAAGATTTGCATA 2159 Score = 113 bits (124), Expect = 5e-20 Identities = 161/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 142958 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 143017 |||||||| | ||| | || || |||| || || ||||| || || ||||| || | Sbjct 1020 CCTCCTCGGAGACGGAGTACCAAGTGAAGGGTCGACTCTTTCTGGATATTGTAGTCAGAC 1079 Query 143018 ATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 143077 | |||| ||||| |||||||||||||| |||| |||||||| ||||| ||||| Sbjct 1080 AGGGTGCGGCCATCTTCCAGTTGTTTACCAGCGAAGATAAGACGTTGTTGATCTGGAGGA 1139 Query 143078 ATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACT 143137 || ||||| || || ||| || ||| | | ||| | ||||| | || || ||| Sbjct 1140 ATTCCTTCCTTATCTTGAATCTTAGCTTTAACATTTTCAATGGTGTCTGATGGCTCAACT 1199 Query 143138 TCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCAT 143184 || | ||| | || || || || | |||||| || ||||||||||| Sbjct 1200 TCCAAAGTTATTGTTTTTCCAGTAAGTGTTTTGACAAATATTTGCAT 1246 Score = 113 bits (124), Expect = 5e-20 Identities = 161/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 142958 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 143017 || || || | |||||| || || |||| |||||||||||||| || || || || Sbjct 2388 CCACCACGAAGACGCAATACCAAGTGAAGAGTAGATTCTTTTTGAATATTATAGTCAGAA 2447 Query 143018 ATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 143077 | |||| |||||| | ||| || ||||| | |||| |||||| ||||| ||||| Sbjct 2448 AGAGTGCGTCCGTCTTCCAATTGCTTTCCAGCGAAAATCAAACGTTGTTGATCTGGAGGA 2507 Query 143078 ATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACT 143137 |||||||| ||||| |||||| ||||| | ||| | || || | ||||| ||| Sbjct 2508 ATGCCTTCCTTGTCTTGAATTTTGGCTTTTACATTTTCAATAGTATCGGAAGGTTCAACT 2567 Query 143138 TCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCAT 143184 || | ||| | || || || || | |||||| || || || ||||| Sbjct 2568 TCCAAAGTAATGGTTTTACCCGTAAGTGTTTTCACAAAGATCTGCAT 2614 Score = 96.9 bits (106), Expect = 4e-15 Identities = 158/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 142958 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 143017 || || || | ||| | ||||| || | || || ||||| || || |||||||| | Sbjct 1248 CCACCACGGAGACGAAGCACTAAGTGCAGGGTTGACTCTTTCTGAATATTGTAATCAGAC 1307 Query 143018 ATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 143077 | |||| ||||| | ||| || |||||| | || ||||| || || || || || Sbjct 1308 AAAGTGCGACCATCTTCCAATTGCTTTCCAGCAAAAATGAGACGCTGTTGGTCTGGGGGG 1367 Query 143078 ATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACT 143137 ||||| || || || ||||| ||| | | || | ||||| | ||||||||| Sbjct 1368 ATGCCCTCCTTATCCTGTATTTTAGCTTTGACATTCTCGATTGTGTCAGATGGTTCTACT 1427 Query 143138 TCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCATA 143185 || | || | ||||| || ||||||||||| || |||||||||||| Sbjct 1428 TCCAGGGTAATGGTCTTTCCAGTCAATGTTTTGACAAATATTTGCATA 1475 Score = 84.2 bits (92), Expect = 2e-11 Identities = 157/231 (68%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 142958 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 143017 |||||||||||||| || || || || | || || ||||| || || || || || Sbjct 792 CCTCCTCGTAAACGTAATACCAAGTGCAAAGTGGACTCTTTCTGAATATTATAGTCAGAG 851 Query 143018 ATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 143077 | || | || || || || || ||||| | || |||||||| ||||| || || Sbjct 852 AGAGTACGGCCATCCTCCAGCTGCTTGCCAGCGAAAATGAGACGTTGTTGATCTGGGGGA 911 Query 143078 ATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACT 143137 || || |||||||| || || ||| | | ||| | ||||| | |||||| ||| Sbjct 912 ATACCCTCTTTGTCTTGGATCTTAGCTTTAACATTTTCAATAGTGTCTGAGGGTTCAACT 971 Query 143138 TCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCATAGCT 143188 || | || | || || || |||| ||| ||||| || || |||||| || Sbjct 972 TCTAATGTGATAGTTTTCCCTGTCAGTGTCTTTACAAAGATCTGCATACCT 1022 >seq76306 Length=316 Score = 113 bits (124), Expect = 5e-20 Identities = 161/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 142958 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 143017 || || | || |||||||||||| || | |||||||| || || || || || || | Sbjct 283 CCACCCCTTAGACGCAAAACTAAGTGCAAAGTAGATTCCTTCTGGATATTATAGTCTGAC 224 Query 143018 ATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 143077 | ||||| | ||||| ||||| || || || | ||||| | ||| ||||| ||||| Sbjct 223 AATGTGCGCCCATCTTCCAGTTGCTTTCCGGCGAAAATCAGTCTTTGTTGATCTGGAGGA 164 Query 143078 ATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACT 143137 |||||||| ||||| ||| ||| |||| | ||| | || || | | ||| ||| Sbjct 163 ATGCCTTCCTTGTCTTGAATCTTTGCCTTTACGTTTTCGATTGTATCAGAAGCTTCCACT 104 Query 143138 TCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCAT 143184 || | || | || || || || || ||||||||||| |||||||| Sbjct 103 TCCAATGTGATGGTTTTCCCAGTTAAAGTTTTTACGAAGATTTGCAT 57 >seq27512 Length=242 Score = 107 bits (118), Expect = 2e-18 Identities = 162/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 142958 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 143017 || |||| | ||| | |||||||| | ||||||||||| || || ||||| || Sbjct 1 CCACCTCTCAGACGAAGTACTAAATGTAAAGTAGATTCTTTCTGAATATTGTAGTCTGAT 60 Query 143018 ATTGTGC-TCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGG 143076 | ||| | || | || || || || || |||||| | || || | ||| || || ||||| Sbjct 61 AGTGTACGTCCA-TCCTCAAGCTGCTTTCCAGCAAAAATAAGCCTTTGTTGGTCTGGAGG 119 Query 143077 TATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTAC 143136 |||||||| || || ||||||| || | | ||| | ||||| | ||| || || Sbjct 120 AATGCCTTCCTTATCTTGAATTTTTGCCTTAACATTTTCGATTGTGTCAGAGGGCTCAAC 179 Query 143137 TTCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCAT 143184 ||| | || | |||||||| |||| ||| ||||| ||||||||||| Sbjct 180 TTCCAGTGTGATAGTCTTGCCAGTCAGTGTCTTTACAAATATTTGCAT 227 >seq27511 Length=800 Score = 98.7 bits (108), Expect = 1e-15 Identities = 135/186 (73%), Gaps = 2/186 (1%) Strand=Plus/Minus Query 142988 GTAGATTCTTTTTGTATGTTGTAATCGCTCATTGTGC-TCGAGTCTTCGAGTTGTTTACC 143046 ||||||||||| || ||||||||||| | ||||| || | ||||| || || || || Sbjct 185 GTAGATTCTTTCTGAATGTTGTAATCAGATAGTGTGCGTCCA-TCTTCAAGCTGCTTTCC 127 Query 143047 AGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTAATTTTTTGTTT 143106 |||| | || || | ||||||||| || || || || ||||| || ||||||| ||| Sbjct 126 AGCAAAAATAAGTCTTTGCTGATCTGGGGGAATTCCCTCTTTATCCTGAATTTTTGCTTT 67 Query 143107 TAGCTGTTCCACCGTGTCCGTGGGTTCTACTTCAACAGTCACCGTCTTGCCGGTCAATGT 143166 | | ||| | || || | || || ||||| | ||| | |||||||| |||| ||| Sbjct 66 AACATTTTCAATTGTATCAGAAGGCTCAACTTCCAAAGTGATAGTCTTGCCAGTCAGTGT 7 Query 143167 TTTTAC 143172 ||||| Sbjct 6 CTTTAC 1 Score = 89.7 bits (98), Expect = 5e-13 Identities = 151/216 (70%), Gaps = 2/216 (1%) Strand=Plus/Minus Query 142970 CGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTCATTGTGC-TCGA 143028 |||| || || || | |||||||| || || || || ||||| || ||| | || | Sbjct 431 CGCAGCACCAAGTGCAAAGTAGATTCCTTCTGAATATTATAATCTGACAATGTACGTCCA 372 Query 143029 GTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTT 143088 ||||| || ||||| || ||| | || || | || || || ||||| ||||||||||| Sbjct 371 -TCTTCCAGCTGTTTTCCTGCAAAAATAAGCCTCTGTTGGTCAGGAGGAATGCCTTCTTT 313 Query 143089 GTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACTTCAACAGTCAC 143148 ||| ||| ||| || | | ||| | || || | | ||| ||||| | ||| | Sbjct 312 GTCTTGAATCTTTGCCTTAACATTTTCTATTGTATCAGAAGCTTCCACTTCCAAAGTGAT 253 Query 143149 CGTCTTGCCGGTCAATGTTTTTACGAATATTTGCAT 143184 || ||||| |||| ||| ||||| || |||||||| Sbjct 252 AGTTTTGCCAGTCAGTGTCTTTACAAAAATTTGCAT 217 >seq41046 Length=7774 Score = 96.9 bits (106), Expect = 4e-15 Identities = 161/229 (70%), Gaps = 3/229 (1%) Strand=Plus/Plus Query 142958 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 143017 ||||| || | || | || | ||| | ||| ||||| ||||| |||||||| || | Sbjct 7155 CCTCCGCGAAGTCGAAGCACAAGATGCAATGTGGATTCCTTTTGAATGTTGTAGTCAGAC 7214 Query 143018 ATTGTGC-TCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGG 143076 | ||| | || | ||||| ||||||||||||||| |||||| ||||||||| || || || Sbjct 7215 AATGTACGTCCA-TCTTCTAGTTGTTTACCAGCAAAGATCAAACGTTGCTGGTCTGGTGG 7273 Query 143077 TATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGC-TGTTCCACCGTGTCCGTGGGTTCTA 143135 || ||||| || || ||||| ||||| | | ||| | || || | || || | Sbjct 7274 AATACCTTCCTTATCTTGGATTTTAGCTTTTAACATTTTCTATAGTATCAGAGGCCTCCA 7333 Query 143136 CTTCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCAT 143184 | || | || | || || || || | || || ||||| |||||||| Sbjct 7334 CCTCGAGGGTAATGGTTTTACCCGTAAGGGTCTTGACGAAAATTTGCAT 7382 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 505258336612560