Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Heliconius_20pachinus_20[genbank_20GCA_5F900068735.1_202017-04-26] 277,083 sequences; 279,264,790 total letters Query= NC_004680.1 Length=59471 Score E Sequences producing significant alignments: (Bits) Value seq157980 143 1e-29 seq125305 95.1 5e-15 seq189415 86.0 2e-12 >seq157980 Length=2738 Score = 143 bits (158), Expect = 1e-29 Identities = 125/153 (82%), Gaps = 2/153 (1%) Strand=Plus/Minus Query 54030 ATGACCATCTACTGCTACGACACAGAGTTCCTCGAAGACGGCAACACCATCGAGTTGATC 54089 |||||| ||||| ||||||||| |||||||||||||||||||| ||| |||| ||||| Sbjct 708 ATGACCGCCTACTTCTACGACACCGAGTTCCTCGAAGACGGCAAGACCGTCGACCTGATC 649 Query 54090 TCGATCGGCATCGTCTGCGAGGACGGCCGCGAGTACTACGCCGTCAACAGTGAC-ATGCC 54148 ||||||||||||||| ||| || |||||||||||||||||| ||||| ||| || | Sbjct 648 TCGATCGGCATCGTCGCCGAAGATGGCCGCGAGTACTACGCCATCAACTCCGACGCTGAC 589 Query 54149 GGAAGACCGAATCCACAAGGACTACTGGCTGAT 54181 | ||||| |||| || ||| ||||||| || Sbjct 588 TG-GGACCGCATCCGGAAAGACGACTGGCTCAT 557 Score = 86.0 bits (94), Expect = 2e-12 Identities = 82/105 (78%), Gaps = 0/105 (0%) Strand=Plus/Minus Query 54359 CCCGGAACTGTGGGCGTACTACGCCGCCTATGACCACGTTGCTCTGGCGCAATTGTGGGG 54418 ||| ||||||||||| |||||||||| || |||||||| || || || || ||| || Sbjct 401 CCCCGAACTGTGGGCCGACTACGCCGCGTACGACCACGTCGCCCTCGCCCAGCTGTTCGG 342 Query 54419 GAAGATGATCCACTTGCCGACCGGGATCCCGATGTGGACCCACGA 54463 ||||||||| | |||| ||||| ||||| |||| ||| |||| Sbjct 341 CAAGATGATCAAACTGCCCACCGGCATCCCCATGTACACCAACGA 297 >seq125305 Length=4407 Score = 95.1 bits (104), Expect = 5e-15 Identities = 79/97 (81%), Gaps = 0/97 (0%) Strand=Plus/Plus Query 54038 CTACTGCTACGACACAGAGTTCCTCGAAGACGGCAACACCATCGAGTTGATCTCGATCGG 54097 || || ||||||||| |||||| |||| ||||| |||||||| || |||||||||| Sbjct 1999 CTTCTTCTACGACACCGAGTTCATCGAGGACGGGCGGACCATCGATCTGGTCTCGATCGG 2058 Query 54098 CATCGTCTGCGAGGACGGCCGCGAGTACTACGCCGTC 54134 | ||||| ||||||||| || |||| |||||||||| Sbjct 2059 CGTCGTCGCCGAGGACGGTCGGGAGTTCTACGCCGTC 2095 >seq189415 Length=2896 Score = 86.0 bits (94), Expect = 2e-12 Identities = 133/189 (70%), Gaps = 6/189 (3%) Strand=Plus/Minus Query 42905 GTGGCGTGACCAAGCGTTGTGCTCCCAGGTCGATCCCGAGCTGTTCTTCCCCGAAAAGGG 42964 ||||| |||| ||| ||||| | ||| ||| |||||| |||||||||||| ||||| Sbjct 570 GTGGCAGGACCGGGCGCTGTGCGCGCAGACCGACCCCGAGGCGTTCTTCCCCGAGAAGGG 511 Query 42965 AGGAAACGCGAAACCC---GCAAAGCGGATCTGCGGTATTTGCGACGTCCGGGACGAATG 43021 || | ||| | | || ||||| |||||| ||||| || || || || Sbjct 510 CGG---CTCGACCCGCGAGGCCAAGCGCATCTGCCAGGGCTGCGAGGTGAAGGCGGAGTG 454 Query 43022 CCTTCAGTGGGCGCTGGACAACAACGAACAGTTCGGCATCTTCGGCGGCCTGTCCGAGCG 43081 ||| ||| |||||| |||| |||| | |||||| |||| ||||| || |||||||| Sbjct 453 CCTCGAGTACGCGCTGCACAAGGACGAGCGGTTCGGTATCTGGGGCGGTCTCTCCGAGCG 394 Query 43082 TGAACGCCG 43090 || || || Sbjct 393 GGAGCGTCG 385 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 189559820790318