Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Heliconius_20pachinus_20[genbank_20GCA_5F900068735.1_202017-04-26] 277,083 sequences; 279,264,790 total letters Query= NC_004682.1 Length=50913 Score E Sequences producing significant alignments: (Bits) Value seq4597 114 4e-21 seq47396 80.6 9e-11 >seq4597 Length=157418 Score = 114 bits (126), Expect = 4e-21 Identities = 596/937 (64%), Gaps = 71/937 (8%) Strand=Plus/Plus Query 35027 GAACTCGTCATCGACCTCCAGCGAGATGTTGGTCGTCCAGTGGCTG--CCAGT--GTCCT 35082 |||| ||| || ||||| | |||||||| || |||||||| || ||||| | | | Sbjct 124412 GAACCGGTCGTCTACCTCGACGGAGATGTTCGTGGTCCAGTGAGTGGACCAGTCGGCCTT 124471 Query 35083 GC--TTGATCCGCAGGAACTCGTAGACCTGCGGGTCCTTCCAGTGCATCATCGACATCCG 35140 || ||||| ||| ||| |||| | |||||| | |||| |||||| | ||| || Sbjct 124472 GCAGTTGAT------GAAGTCGAAGACTTCCGGGTCGTCCCAGACCATCATTGCCATACG 124525 Query 35141 CGCTGACCGGCGCACACCGCCGGCCACCACGCACTGCGCGATGGCGTGGTCGATCTCCAT 35200 ||| ||||| || |||| || || || ||| | ||||||| |||||||||||| ||| Sbjct 124526 CGCGGACCGACGTGCACCACCTGCGACGACGGATGCCGCGATGTCGTGGTCGATCTGCAT 124585 Query 35201 CGCCGCGATACCGGTGAGCTGTCCACCCTCCGTAGCGATCTCGCTCAGGATCTC---GCA 35257 ||| |||| ||||| || || || | || || || | | ||| | || | Sbjct 124586 GGCCTCGATGCCGGTCAGGTG---ACGGCCGGTTGC---CTTGTTGAGGGTGTCTGTGAT 124639 Query 35258 CACGTCGATCAACATCCGAGCCAACGGCAGCGGCCCCGAGGCCGTGCCGCCGAACGTCTT 35317 | | ||| | || ||||| || || || || || || || ||||| ||||| Sbjct 124640 GCTGACAATCGATGTC---GCCAAAGGTGCTGGGCCAGAAGCGGTTCCACCGAATGTCTT 124696 Query 35318 CA--GCTTCGCCCCGAACTGACGGACCCGAGACACGTCGTAGACACGCTGGAAGTGGCTG 35375 || | | |||| | || | ||| |||| |||| |||| | ||| || Sbjct 124697 CAACGGTACGCCGTGTCCT--CTGACATCGGACAGGTCGAAGAC---GAGTCCGTGCATG 124751 Query 35376 ACCTCATCCCGGTAGTGGGTGTCGATCAGATCCACCAGGGCAGCCGCCCAGCCCTCGCGG 35435 |||| | |||| | ||||| ||||| |||| | || || ||||||||| |||| Sbjct 124752 CCCTCTT--CGGTCG-ACGTGTCAATCAGGTCCAGCCATGCTGCGACCCAGCCCTGGCGG 124808 Query 35436 GAGTCCTCGATGACGAAGGCACCGGC-CCAGTCGGGGTCGTACTCCGTCGACAGGACGCC 35494 | |||||| | ||| | | |||| | || || | | ||| | ||||| ||| Sbjct 124809 GTGTCCTCCACGAC-ATGAGTGCGGCAGCTTTCCGGCGCCTTGTCCATGAACAGGCTGCC 124867 Query 35495 TGC---CTCCTTCATCGCCTCGTAGTCCGGGTGGTCCGGGTCGCAGACGATGTGGACGTA 35551 ||| |||||| | || ||||||||||||| | | || | || | ||| | Sbjct 124868 TGCCTGCTCCTTGGTTGCTGCGTAGTCCGGGTGAGACTCGGCGATGGTGACGCCCACGAA 124927 Query 35552 CA-GCTCCTGCTGGACCGGGCCGTAGT--CGATGAACCGGTTGCT----GTAGTTGGCCC 35604 || ||| | | ||| ||| | ||| | ||| | || |||| ||||||||| | Sbjct 124928 CAGGCTGC-CCAGGATCGG--CTGAGTGGCCTTGATCAGG-TGCTGTGAGTAGTTGGCGC 124983 Query 35605 CGACACCGCCGCCCTCCATGAGCCGCATGAACG---TGAACTCGAAGTGGTCCGAGGGCT 35661 |||||||||||||||| | || || | ||| ||||| ||||||||| || || Sbjct 124984 CGACACCGCCGCCCTCGAACAGACG---GGACGCGAGGAACTTGAAGTGGTCACTGGTCT 125040 Query 35662 TCTCGGTCCAGCCCGAGACCCAGCAATT------GAACAGGTGCTGGGCGTTCTTCACGC 35715 | | | ||| || ||||| | || || |||| ||| | | |||| || Sbjct 125041 TTGCCGACCATCCGGAGACGAAACAGTTGCGAGAGAACGGGTTCACG--GTTC----CG- 125093 Query 35716 CTGATGCCCACAGGTGGCGTCCACCGGGGAGGATCTTGAACTCCTCCATCAGCCGGATCA 35775 ||| |||||||||||||||| | ||||| |||||||| | | ||||| || || Sbjct 125094 GTGA--CCCACAGGTGGCGTCCGGCCGGGAGCATCTTGAAGTTGTAGATCAGGTCGAACA 125151 Query 35776 GATCGGCGCGCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCGCCAGGTTCCCGTCGA 35835 ||| | ||| ||||||| ||||||| Sbjct 125152 AATCCTCACGCTCGTTCGGGAGCCAGGTTGAGGACGGGACGTAGCCCAGGTTGCCGTCGA 125211 Query 35836 CCACGCGCCGCACCGTTTCCGGCCAGGTCTCCTTAGACCCATCGGGCTTGGTCCGGGAGT 35895 |||| || || || || ||| |||||||| | || || |||||| | || || Sbjct 125212 CCACACGTGAGACGGTCTCGAACCATGTCTCCTTCGTACCGTCAGGCTTGATGCGACTGT 125271 Query 35896 AGGTCCGGTTGTAGACCAGCTCCCCTGTCGGTCCCCA 35932 ||||||||| ||| ||| || || |||||||||| Sbjct 125272 AGGTCCGGTCGTATACCTCCTTGCCGATCGGTCCCCA 125308 >seq47396 Length=7053 Score = 80.6 bits (88), Expect = 9e-11 Identities = 61/71 (86%), Gaps = 1/71 (1%) Strand=Plus/Plus Query 4045 CATAGGCACGTAGCTCAATTGGTCAGAGCAGCGGTCTCCAAAGCCGCCGGCTGCAGGTTC 4104 || ||| |||||||||| ||| ||||||||||||||||||| |||| || ||||||||| Sbjct 4050 CAGAGGGGCGTAGCTCAACTGG-CAGAGCAGCGGTCTCCAAAACCGCAGGTTGCAGGTTC 4108 Query 4105 GAGTCCTGCCG 4115 ||||||| || Sbjct 4109 AAGTCCTGTCG 4119 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 162264329290250