Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Heliconius_20pachinus_20[genbank_20GCA_5F900068735.1_202017-04-26] 277,083 sequences; 279,264,790 total letters Query= NC_004683.1 Length=57050 Score E Sequences producing significant alignments: (Bits) Value seq219746 215 2e-51 >seq219746 Length=1062 Score = 215 bits (238), Expect = 2e-51 Identities = 429/642 (67%), Gaps = 31/642 (5%) Strand=Plus/Plus Query 45990 CCCGGAGTGCACGAATCACTCGGTGGCCAAGGGCCGCAAACGCGTCGACTCGCAGCCCGA 46049 |||| |||||| |||||||||| ||| ||||| ||| |||| |||| || ||||| Sbjct 18 CCCGTCGTGCACCCATCACTCGGTCGCCCAGGGCATCAAGCGCGCCGACAAGCGCCCCGA 77 Query 46050 TCTGTTCGGCGAGGTGCTGCCCGACGCGGCGGCCGAGCGGTCCCGCGCCACGATGTGGGA 46109 | ||| |||||| ||||||||| || ||||| || || || || ||||||||||| Sbjct 78 CCCCAACGGGGAGGTGTTGCCCGACGACGCCGCCGAACGCTCGCGGGCGACGATGTGGGA 137 Query 46110 CGTGCCCCGGTTCGCCGAGGCGCACCGCTACCAGGCCGTCATCGTCGAGAACGTCGTGGA 46169 ||| ||||||||||||| |||| |||| | || ||||||| ||||| || || Sbjct 138 CGTCGTCCGGTTCGCCGAGTACCACCAGTACCGATCAATCGTCGTCGAAAACGTTGTCGA 197 Query 46170 CGCGTGGCACTGGCAGCCGTTCCAGGCGTGGCTGATGGCCATGGACTCGCTGGACTACGA 46229 || || ||||| | |||| | ||||||| || | |||| | |||| |||| | Sbjct 198 CGTGTATTTCTGGCCGTTGTTCGCGCCGTGGCTCGCCGCGACGGACGCCCTGGGCTACAA 257 Query 46230 GCACCACATCGTGTTCCTGAACTCGATGCACGCGCAGGCGTTCGGTCCGGGGGCGCCGCA 46289 ||| | ||||||| || |||||||||||||||||| |||||||| | ||| || || Sbjct 258 CCACGAGATCGTGTGGCTCAACTCGATGCACGCGCAGCTGTTCGGTCAGCCGGCCCCTCA 317 Query 46290 GTCACGGGACCGCATGTACGTGGTGTTCTGGCGCAGGGGCAACCAGCGTCCCGATGTTGA 46349 ||| ||||| | || || || || Sbjct 318 ATCAAGGGACAGGATCTATGTCGT--------NNNNNNNNNNNNNNNNNNNNNNNNNNNN 369 Query 46350 CCGGCTGACGCGGCCCGAGGCGGTGTGCCCGACGTGCGGGCAGGTCCGCGTGATGCAGTC 46409 || || ||| ||||||||| |||| || | |||| | || || | Sbjct 370 NCG--TG-----------GGCTGTGTGCCCGTCGTGTGGCCCTGTCCAGTCGGTGAAGAC 416 Query 46410 GTGGAAGCTGCCGGAGCGGGCCCCGTGGGGCCGCTACCGCGCCCAGTACGTGTACCGGTG 46469 ||||||| |||||||| | ||||||||||||||||||||||||| || | || Sbjct 417 CTGGAAGCGCCCGGAGCG---TCAGTGGGGCCGCTACCGCGCCCAGTACACGTTCTCCTG 473 Query 46470 CCCG-TCGAC-CACGTGCCGCAACCAGGTCTTGGAGCCGCTGTTCCGTCCGGCCGCCGAG 46527 |||| || | || | || || | ||| |||| || | || || ||||| || Sbjct 474 CCCGAACGGCTCATGCGCGGCCA-CAG----TGGAACCCGACTGGCGACCCGCCGCAGAC 528 Query 46528 ATCATCGACTGGTCGCTGTTGGGGCAGCGGATCGGAGACCGGGACAAGCCACTGGCGGAG 46587 |||||||||||||||||| || || ||||| ||||| | || ||||| ||| Sbjct 529 ATCATCGACTGGTCGCTGCCCGGCACCCGCATCGGTGACCGCAAACGCCCGCTGGCCGAG 588 Query 46588 AAGACGATGGCGCGGATCCGGGCCGGCATCGAGCGGTACTGG 46629 ||||| ||| | || |||| |||||| ||||| || |||||| Sbjct 589 AAGACCATGACCCGTATCCAGGCCGGGATCGACCGCTACTGG 630 Score = 122 bits (134), Expect = 3e-23 Identities = 208/296 (70%), Gaps = 33/296 (11%) Strand=Plus/Plus Query 46645 CCGGTCGAGGGCCGCGACGGCAAGGCCGCCGCGCCCGTCGATCAGC--CGACCCGCACCA 46702 || |||||||| ||||| ||||| || ||| ||| || || || || ||||||| Sbjct 733 CCCGTCGAGGGGCGCGAGGGCAAAGCGGCCCTGCCAATC--TCGGCACCGGTACGCACCA 790 Query 46703 TGACGACCCGTAACGAGACTG----GGC--TGCTGGTCCCGACGGGCGGTACGTGGCGCA 46756 |||| ||||| || ||||| | ||| ||||||| || || ||||| |||||||||| Sbjct 791 TGACCACCCGCAATGAGACCGCCCTGGCGATGCTGGTGCCCACCGGCGGCACGTGGCGCA 850 Query 46757 CCGACGCGA---CGAGCACTGACGATCCGATTCCGACGCGCACCACACGCGAGAACGATG 46813 ||||||| | || || |||| || | || || |||||||| || |||||||| Sbjct 851 CCGACGCAACCCCGGCCAGTGAC---CCCTTCCCCACCCGCACCACTCGGGAGAACGA-- 905 Query 46814 GCCTCGCGTTGGCCCCATTCATCGCGGAGTTGCGCGGCGGCGGGTCCAAGCACCGCCCGG 46873 |||| | | | ||| |||| ||| |||||||| ||| ||| |||||| Sbjct 906 ----CGCGAT---CGCGTTCGTCGCCGAGCTGCGCGGC----GGTAGCAGCGACGCCCGC 954 Query 46874 TTGATCA----TCCGCTGGCCACGGTCACCGCGTCGGGCACACACCACGGCCTGGT 46925 |||| ||||||||||||||| ||| ||||||| ||||||| ||||| Sbjct 955 GGAATCAGTTCGCCGCTGGCCACGGTCTGCGCTTCGGGCAACCACCACGCGCTGGT 1010 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 181838111872152