Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Heliconius_20pachinus_20[genbank_20GCA_5F900068735.1_202017-04-26] 277,083 sequences; 279,264,790 total letters Query= NC_004688.1 Length=110865 Score E Sequences producing significant alignments: (Bits) Value seq68307 203 2e-47 seq24208 192 4e-44 seq101977 174 1e-38 seq50100 89.7 4e-13 seq4597 82.4 5e-11 >seq68307 Length=2902 Score = 203 bits (224), Expect = 2e-47 Identities = 260/358 (73%), Gaps = 3/358 (1%) Strand=Plus/Plus Query 99207 GACCGCGGCCTCGATCTCCCCATCGGAGACGAACGCGCCCTGTATCCGGATGGCGCTGCG 99266 |||| ||||| ||||||| | |||| || |||||||||||| |||||||||| || | Sbjct 1678 GACCACGGCCGAGATCTCCTCGTCGGTGATGAACGCGCCCTGCATCCGGATGGGGCGGTT 1737 Query 99267 CGCCCCCACTGGCAGAAATAACCCGTCACCCATTCCCATGAGTTGCTCGGCTCCGCCCTC 99326 ||| |||| || | || | ||||| ||||| || ||||| | ||| || || || Sbjct 1738 CGCGCCCATCGGGATGAAGAGTCCGTCGCCCATGCCGATGAGCTTCTCCGCGCCCGGCTG 1797 Query 99327 GTCCAGGATCACCCGGCTATCGGTGAGGGACGCTGTGGCGAACGACAGCCGCGAGGGCAC 99386 || ||||| || || ||||| || |||| || ||||||| |||||||| || || Sbjct 1798 ATCGAGGATGACGCGCGAGTCGGTCAGCGACGACGTCGCGAACGCGAGCCGCGACGGGAC 1857 Query 99387 GTTGCTCTTGATGAGGCCCGTCACCACATCCACGGAGGGCCGCTGCGTCGCCAGGACGAG 99446 |||| ||||||| ||||| || || || || || || || ||||| ||||| || || || Sbjct 1858 GTTGGTCTTGATCAGGCCGGTGACGACGTCGACCGACGGTCGCTGGGTCGCGAGCACCAG 1917 Query 99447 ATGAATGCCGGCCGCACGCGCCTTCTGCGCGATGCGGACAATGTTGGCCTCAACCTCTTT 99506 || || || ||||| || |||||||| | ||||||||| || | |||| || || Sbjct 1918 GTGGATACCCGCCGCGCGGGCCTTCTGGGTGATGCGGACGATCGCGTCCTCGACGTC--- 1974 Query 99507 CTTGTAGCCACCCATCATGAGATCAGCGAGTTCATCCACCACTACCACGATGTAGGGG 99564 |||| | ||||||||| || ||||| || || || | ||| |||||||||| Sbjct 1975 CTTGGGCGCGGTCATCATGAGGTCGGCGAGCTCGTCGACGATGGCCAGGATGTAGGGG 2032 Score = 163 bits (180), Expect = 2e-35 Identities = 343/500 (69%), Gaps = 20/500 (4%) Strand=Plus/Plus Query 99691 AGGTGGGGGATACCGTTGTACGGGGTGAGCTCGACACAT-TTGGGGTCGATCATGATGAG 99749 || || ||||| || | |||||| || || ||||| ||| || |||||||| | ||| | Sbjct 2219 AGATGCGGGATGCCCTCGTACGGCGTCAGTTCGAC-CATCTTCGGGTCGATGAGGATCAT 2277 Query 99750 TTTGACCCGATCAGGGGTCGCCCGGTAGAGCAGCGAAACCAGCATTGAGTTGATGAAGCT 99809 ||| || |||||||||||| ||||| || |||| ||| ||||| | |||||| Sbjct 2278 CCGGACGTCGTCCGGGGTCGCCCGGGTCAGCAGTGACACCAACATCGAGTTCACGAAGCT 2337 Query 99810 GGACTTGCCCGATCCGGTCGCGCCAGCCACCAGCAGATGCGGCATCTTAGCCAGGTTCAG 99869 |||||||||||| ||||| | ||| || || ||||| || |||||||| || ||||| Sbjct 2338 GGACTTGCCCGAACCGGTGGAGCCGGCGACGAGCAGGTGGGGCATCTTGGCGAGGTTGGC 2397 Query 99870 GGAGATGTCCTTGCCCTCGACGTCCTTGCCCACTGCCACGGTCAACGGATGGTCGTC--T 99927 | || | | ||||||| ||||||||||| | | | ||||||| || | ||| | Sbjct 2398 GCTGACGAAATCACCCTCGATGTCCTTGCCCAGCCCGATGATCAACGGGTGCTGGTCCTT 2457 Query 99928 TCGGGAACGATGTG-CT---GCA-ACCGCACAGTCTGCCGTTC---CGGCCG-----GGG 99974 |||| | ||| || ||| || ||||| | | || ||| || ||| Sbjct 2458 ACGGGTGCTCGGTGACTTGAGCACGTCGGCCAGTCGGACCATCTCGCGGTCGCTGTTGGG 2517 Query 99975 GAGCTCGATTCCTACGGCTGTTTTCCCGGGGATGGGGGCAACCACCCGGACGCTCTCTGT 100034 | |||||| || ||||| | || || |||||||| || | || || ||| | || || Sbjct 2518 CACCTCGATACCCACGGCGGACTTGCCCGGGATGGGCGCGAGCAGACGAACGTTGTCGGT 2577 Query 100035 TGCGAGCGCGTAGGCCA-ACTGGGACTGTAGTTGTGCGACTTTCTGGATGCGCACACCCG 100093 || |||||||| | || || | || | || |||| || |||||||| Sbjct 2578 CGCCGCGGCGTAGGCGATGTTGCGAGCG-AGGGCGGTGATCTTCTCGACCTTCACACCCG 2636 Query 100094 GCCCCAGTGTGATCTCGTAGCGTGTGACGCTCGGTCCATCGGTGCGGCCGGTGACCTTGG 100153 | || || || ||||||||| || || ||||||| |||| |||||||||| || Sbjct 2637 GGCCGAGCTCGACCTCGTAGCGGGTCACCGTCGGTCCGCGGGTGAAGCCGGTGACCGCGG 2696 Query 100154 CCTCGATGTCGAACT-CTCG 100172 | ||||| | ||||| |||| Sbjct 2697 CGTCGATCTTGAACTGCTCG 2716 >seq24208 Length=1566 Score = 192 bits (212), Expect = 4e-44 Identities = 260/360 (72%), Gaps = 3/360 (1%) Strand=Plus/Plus Query 99205 TTGACCGCGGCCTCGATCTCCCCATCGGAGACGAACGCGCCCTGTATCCGGATGGCGCTG 99264 ||||| ||| | |||||||| | |||| || ||| |||||| | || | | || Sbjct 369 TTGACGACGGTCGCGATCTCCGCCTCGGTCACCCACGAGCCCTGCACGCGCGTCGGCTTG 428 Query 99265 CGCGCCCCCACTGGCAGAAATAACCCGTCACCCATTCCCATGAGTTGCTCGGCTCCGCCC 99324 | |||||||| || || || | |||||| ||| || | || | |||||| || | Sbjct 429 CTCGCCCCCATCGGGAGGAACAGCCCGTCGCCCTGGCCGACCAGCTTCTCGGCGCCCGGC 488 Query 99325 TCGTCCAGGATCACCCGGCTATCGGTGAGGGACGCTGTGGCGAACGACAGCCGCGAGGGC 99384 | ||| ||||| |||||||| ||| |||| || |||||||| | || ||||| ||| Sbjct 489 TGGTCGAGGATGACCCGGCTGTCGCCGAGGCTCGACGTGGCGAAGGCGAGTCGCGACGGC 548 Query 99385 ACGTTGCTCTTGATGAGGCCCGTCACCACATCCACGGAGGGCCGCTGCGTCGCCAGGACG 99444 |||||| |||||| || ||||||||||||||||| || |||||||||||||| || ||| Sbjct 549 ACGTTGGCCTTGATCAGACCCGTCACCACATCCACCGACGGCCGCTGCGTCGCGAGCACG 608 Query 99445 AGATGAATGCCGGCCGCACGCGCCTTCTGCGCGATGCGGACAATGTTGGCCTCAACCTCT 99504 || || |||||||| || ||||| ||| | |||||| || || |||| || || Sbjct 609 AGGTGGATGCCGGCGGCGCGCGCGAGCTGGGTGATGCGCACGATCGACTCCTCGACGTC- 667 Query 99505 TTCTTGTAGCCACCCATCATGAGATCAGCGAGTTCATCCACCACTACCACGATGTAGGGG 99564 | | || | ||||||| || || || || || || ||||| |||| || ||||||| Sbjct 668 -GCGCGGCGCGA-CCATCATCAGGTCGGCCAGCTCGTCGACCACGACCAGGAGGTAGGGG 725 Score = 104 bits (114), Expect = 2e-17 Identities = 96/122 (79%), Gaps = 0/122 (0%) Strand=Plus/Plus Query 99778 AGCAGCGAAACCAGCATTGAGTTGATGAAGCTGGACTTGCCCGATCCGGTCGCGCCAGCC 99837 |||||||| | ||| |||||||||||||| |||||||| |||||||| | ||| || Sbjct 999 AGCAGCGAGGTGATCATCGAGTTGATGAAGCTCGACTTGCCGGATCCGGTGGAGCCGGCG 1058 Query 99838 ACCAGCAGATGCGGCATCTTAGCCAGGTTCAGGGAGATGTCCTTGCCCTCGACGTCCTTG 99897 || ||||| ||||||||||| || |||||| | || | |||||||||||||||| Sbjct 1059 ACGAGCAGGTGCGGCATCTTCGCGAGGTTCGCGACGACGAAGCCGCCCTCGACGTCCTTG 1118 Query 99898 CC 99899 || Sbjct 1119 CC 1120 >seq101977 Length=1174 Score = 174 bits (192), Expect = 1e-38 Identities = 341/500 (68%), Gaps = 23/500 (5%) Strand=Plus/Plus Query 99688 AGAAGGTGGGGGATACCGTTGTACGGGGTGAGCTCGACACAT-TTGGGGTCGATCATGAT 99746 || ||||| ||||| || | |||||| ||||||||||| ||| ||||||||||||| | Sbjct 436 AGCAGGTGCGGGATGCCCTCGTACGGCGTGAGCTCGAC-CATCTTGGGGTCGATCAGCAC 494 Query 99747 GAGTTTGACCCGATCAGGGGTCGCCCGGTAGAGCAGCGAAACCAGCATTGAGTTGATGAA 99806 | |||| | || | ||||| | |||||||| |||||||| ||||| | ||| Sbjct 495 CATCCGGACCTCGGCCGGCGAGGCCCGCTGCAGCAGCGAGACCAGCATCGAGTTCACGAA 554 Query 99807 GCTGGACTTGCCCGATCCGGTCGCGCCAGCCACCAGCAGATGCGGCATCTTAGCCAGGTT 99866 |||||||||||| || ||||| ||||| ||||||||||| ||||| |||| |||||||| Sbjct 555 GCTGGACTTGCCGGAACCGGTGGCGCCGGCCACCAGCAGGTGCGGGGTCTTGGCCAGGTT 614 Query 99867 CAGGGAGATGTCCTTGCCCTCGACGTCCTTGCCCACTGCCACGGTCAACGGATGGTCGTC 99926 || | || | |||||||||||||||||| | | | |||||| || |||| Sbjct 615 CATCGTGACGAAACCGCCCTCGACGTCCTTGCCGAGGCCGATCACCAACGGGTGCGCGTC 674 Query 99927 --TTCGGGAA--CG-----------ATGTGCTGCAACCGCACAGTCTGCCGTTCCGGCCG 99971 | |||| | || | || || || || ||| || || | Sbjct 675 CTTGCGGGCATCCGGAGCCGCCAGCACGTCACCCAGGCGGACCATCTCACGATCGGAGTT 734 Query 99972 GGGGAGCTCGATTCCTACGGCTGTTTTCCCGGGGATGGGGGCAACCACCCGGACGCTCTC 100031 ||| | |||||| || || || | || |||||||| || || | || |||||| | || Sbjct 735 GGGCACCTCGATGCCCACCGCCGACTTGCCGGGGATCGGCGCCAGCAGTCGGACGTTGTC 794 Query 100032 TGTTGCGAGCGCGTAGGCCAACT---GGGACTGTAGTTGTGCGACTTTCTGGATGCGCAC 100088 || |||| |||||||| | | ||| | || | || |||| || ||| Sbjct 795 CGTCGCGACGGCGTAGGCGATGTTGCGGGTC---AGCGCGGTGATCTTCTCGACCTTCAC 851 Query 100089 ACCCGGCCCCAGTGTGATCTCGTAGCGTGTGACGCTCGGTCCATCGGTGCGGCCGGTGAC 100148 ||||| || ||| || |||||| || |||||| |||| || |||| ||||||||| Sbjct 852 GCCCGGGCCGAGTTCGACCTCGTACCGGGTGACGGTCGGGCCCCGGGTGAAGCCGGTGAC 911 Query 100149 CTTGGCCTCGATGTCGAACT 100168 ||| |||| || ||||| Sbjct 912 GGCGGCGTCGACGTTGAACT 931 Score = 138 bits (152), Expect = 8e-28 Identities = 186/254 (73%), Gaps = 5/254 (2%) Strand=Plus/Plus Query 99312 CTCGGCTCCGCCCTCGTCCAGGATCACCCGGCTATCGGTGAGGGACGCTG-TGGCGAACG 99370 |||||| || || ||| ||||| || || || ||||| || || |||| ||||||| | Sbjct 3 CTCGGCGCCCGGCTGGTCGAGGATGACGCGACTGTCGGTCAGCGA-GCTGGTGGCGAAGG 61 Query 99371 ACAGCCGCGAGGGCACGTTGCTCTTGATGAGGCCCGTCACCACATCCACGGAGGGCCGCT 99430 |||| || |||||||||||| ||||||| || || || || || || ||||||||||| | Sbjct 62 ACAGTCGGGAGGGCACGTTGGTCTTGATCAGACCGGTGACGACGTCGACGGAGGGCCGTT 121 Query 99431 GCGTCGCCAGGACGAGATGAATGCCGGCCGCACGCGCCTTCTGCGCGATGCGGACAATGT 99490 | || || ||||| || || || ||||| || || |||||||| | ||| ||||| || Sbjct 122 GGGTGGCGAGGACCAGGTGGATCCCGGCGGCCCGGGCCTTCTGGGTGATCCGGACGATCG 181 Query 99491 TGGCCTCAACCTCTTTCTTGTAGCCACCCATCATGAGATCAGCGAGTTCATCCACCACTA 99550 | |||| || || | | |||| |||||| || || ||||| || || | | Sbjct 182 CGTCCTCGACGTC--CCGCGGAGCC-GTCATCATCAGGTCGGCGAGCTCGTCGATGATCC 238 Query 99551 CCACGATGTAGGGG 99564 ||| |||||| ||| Sbjct 239 CCAGGATGTACGGG 252 >seq50100 Length=1361 Score = 89.7 bits (98), Expect = 4e-13 Identities = 73/89 (82%), Gaps = 0/89 (0%) Strand=Plus/Minus Query 54368 TCACCCCGCACGACCTCCGGCACACCTGCGCCTCGCTGGCCATCTCCTCCGGCGCCAACG 54427 |||| ||||||||||| ||||||||| |||||||| || ||||| | ||||| |||| Sbjct 266 TCACTCCGCACGACCTGCGGCACACCGCTGCCTCGCTCGCTATCTCGGCGGGCGCGAACG 207 Query 54428 TCAAGGCGGTCCAGAACCTTCTGGGACAC 54456 ||||||| ||||||| | | || |||||| Sbjct 206 TCAAGGCCGTCCAGACCATGCTCGGACAC 178 >seq4597 Length=157418 Score = 82.4 bits (90), Expect = 5e-11 Identities = 174/256 (68%), Gaps = 3/256 (1%) Strand=Plus/Plus Query 14918 CGGGCTTACCCTTCGGGCCGCACCGTACGCAATCCTTGCCGTGTACCGCGTTGGCGTATT 14977 ||| ||| ||||| | ||| || || ||||| | |||| || ||| ||| | Sbjct 78067 CGGACTT-CCCTTGGTGCCACAACGCACGCATGCGACCGCGTGCACGGCGCCCTCGTGCT 78125 Query 14978 GCTCCTTCGCTGCATAGTAGACGTCGGCGTAATGCCCTTGGGCCTTGAGGCAGGCCCCGG 15037 || ||||| || ||||||| ||||| | | || |||| ||||| ||| | | | Sbjct 78126 TCTTCTTCGTCGCGTAGTAGATGTCGGTGGCTGGACCCTGGGACTTGATGCACGACGAAG 78185 Query 15038 TAATGTTCCACAGGCGCATCCGCGCCACGTCGTTCCAGTTGCCCTGGACACCTTTCATGT 15097 || ||| |||||| ||||| ||| |||||| ||| |||| | ||| Sbjct 78186 CGATCAGCCAGGTGCGCATGCGCGCGTTTTCGGACCAGTTCGACTGCTTACCTCGC-TGT 78244 Query 15098 -GCCGCGGCGCGGCGCCGTTGACCACGTGATAACCGCAGTAGGCCCACAGCTCGGAGACG 15156 | || | || | ||||| || |||||| | || ||||||||||||||||| || ||| Sbjct 78245 CGACGTGCTGCCGAGCCGTCGATGACGTGAAAGCCACAGTAGGCCCACAGCTCCGACACG 78304 Query 15157 GTGCGCGGCCGATCGT 15172 |||||||| ||||||| Sbjct 78305 GTGCGCGGACGATCGT 78320 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 353445587978238