Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Heliconius_20pachinus_20[genbank_20GCA_5F900068735.1_202017-04-26] 277,083 sequences; 279,264,790 total letters Query= NC_004690.1 Length=113220 Score E Sequences producing significant alignments: (Bits) Value seq28654 141 7e-29 seq41046 113 3e-20 seq27511 89.7 4e-13 >seq28654 Length=3315 Score = 141 bits (156), Expect = 7e-29 Identities = 163/218 (75%), Gaps = 1/218 (0%) Strand=Plus/Plus Query 15152 AAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCT 15211 || || || ||||| || || |||||||| || || || || ||| | | ||||| Sbjct 2403 AATACCAAGTGAAGAGTAGATTCTTTTTGAATATTATAGTCAGAAAGAGTGCGTCCGTCT 2462 Query 15212 TCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCA 15271 || ||||| || |||||| | |||||||||||||| || ||||| ||||| ||||| Sbjct 2463 TCCAATTGCTTTCCAGCGAAAATCAAACGTTGTTGATCTGGAGGAATGCCTTCCTTGTCT 2522 Query 15272 CAAATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTT 15331 ||||||| |||||| |||| || |||||| | ||| || || || ||||||||| Sbjct 2523 TGAATTTTGGCTTTTACATTTTCAATAGTATCGGAAGGTTCAACTTCCAAAGTAATGGTT 2582 Query 15332 TTACCTGTCAGAGTTTTTACAAAAATTTGCATATTTGA 15369 ||||| || || ||||| ||||| || ||||| ||||| Sbjct 2583 TTACCCGTAAGTGTTTTCACAAAGATCTGCAT-TTTGA 2619 Score = 118 bits (130), Expect = 8e-22 Identities = 165/229 (72%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 15137 CCACCTCTCAATCTTAAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTT 15196 |||||||| || | | ||||| || | || || |||||||| |||||||| || Sbjct 1932 CCACCTCTTAAACGAAGTACTAAGTGCAAAGTAGATTCTTTTTGGATGTTGTAGTCAGAC 1991 Query 15197 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGA 15256 || | | | ||||||||||| ||||| || | || | ||||||||| || ||| Sbjct 1992 AGTGTACGACCATCTTCTAATTGCTTGCCCGCAAAAATAAGACGTTGTTGATCCGGAGGA 2051 Query 15257 ATTCCTTCTTTGTCACAAATTTT-GCTCTTTACAATTTCTATGGTATCGCTATTTTCTAC 15315 || ||||||||||| ||||| ||| || ||| |||| || || || | ||| || Sbjct 2052 ATGCCTTCTTTGTCTTGGATTTTAGCT-TTCACATTTTCAATTGTGTCAGAAGCTTCAAC 2110 Query 15316 ATCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATA 15364 ||||| ||||| ||||| || || || ||||| ||||| ||||||||| Sbjct 2111 TTCTAAAGTAATTGTTTTTCCAGTGAGTGTTTTAACAAAGATTTGCATA 2159 Score = 100 bits (110), Expect = 2e-16 Identities = 159/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 15137 CCACCTCTCAATCTTAAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTT 15196 ||||||| || | | |||||||||||||| || |||||||| |||||||| || Sbjct 1476 CCACCTCGCAGACGCAGTACTAAATGAAGGGTAGACTCTTTTTGGATGTTGTAGTCAGAC 1535 Query 15197 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGA 15256 || | | | ||||||| || |||||||| | || | ||||||||| || ||| Sbjct 1536 AGGGTGCGACCATCTTCTAGCTGCTTGCCAGCAAAGATAAGACGTTGTTGATCTGGGGGA 1595 Query 15257 ATTCCTTCTTTGTCACAAATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACA 15316 || || ||||| || ||| || ||||||| |||| ||||| || || || Sbjct 1596 ATACCCTCTTTATCTTGAATCTTAGCCTTTACATTTTCAATGGTGTCAGATGGCTCCACC 1655 Query 15317 TCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATA 15364 || | || || || || ||||| || || || ||||| ||||||||| Sbjct 1656 TCCAGAGTTATAGTCTTGCCTGTTAGTGTCTTGACAAATATTTGCATA 1703 Score = 93.3 bits (102), Expect = 3e-14 Identities = 148/210 (70%), Gaps = 2/210 (1%) Strand=Plus/Plus Query 15155 ACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTCT 15214 || || |||||||| || ||||| || || ||||| || || | | | ||||| Sbjct 1038 ACCAAGTGAAGGGTCGACTCTTTCTGGATATTGTAGTCAGACAGGGTGCGGCCATCTTCC 1097 Query 15215 AATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAA 15274 | |||||| |||||| | || | ||||||||| || ||||||||||| || || | Sbjct 1098 AGTTGTTTACCAGCGAAGATAAGACGTTGTTGATCTGGAGGAATTCCTTCCTTATCTTGA 1157 Query 15275 AT-TTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTT 15333 || || ||| || ||| |||| ||||| || || || || || || || ||||| Sbjct 1158 ATCTTAGCT-TTAACATTTTCAATGGTGTCTGATGGCTCAACTTCCAAAGTTATTGTTTT 1216 Query 15334 ACCTGTCAGAGTTTTTACAAAAATTTGCAT 15363 || || || ||||| ||||| |||||||| Sbjct 1217 TCCAGTAAGTGTTTTGACAAATATTTGCAT 1246 >seq41046 Length=7774 Score = 113 bits (124), Expect = 3e-20 Identities = 147/200 (74%), Gaps = 5/200 (3%) Strand=Plus/Plus Query 15167 GTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCG--CGTCTTCTAATTGTTTGC 15224 ||||| || ||||| |||||||| || | ||| || | ||||||| |||||| | Sbjct 7185 GTGGATTCCTTTTGAATGTTGTAGTCAG--ACAATGTACGTCCATCTTCTAGTTGTTTAC 7242 Query 15225 CAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAAATTTT-GCTC 15283 |||| | ||||||||||| ||||| |||||| ||||| || || ||||| ||| Sbjct 7243 CAGCAAAGATCAAACGTTGCTGGTCTGGTGGAATACCTTCCTTATCTTGGATTTTAGCTT 7302 Query 15284 TTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTTACCTGTCAGA 15343 || ||| ||||||| ||||| || || || | ||||||||||||||| || || Sbjct 7303 TTAACATTTTCTATAGTATCAGAGGCCTCCACCTCGAGGGTAATGGTTTTACCCGTAAGG 7362 Query 15344 GTTTTTACAAAAATTTGCAT 15363 || || || ||||||||||| Sbjct 7363 GTCTTGACGAAAATTTGCAT 7382 >seq27511 Length=800 Score = 89.7 bits (98), Expect = 4e-13 Identities = 115/156 (74%), Gaps = 2/156 (1%) Strand=Plus/Minus Query 15209 TCTTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTG 15268 ||||| | ||||| || || | || | | |||||||| ||||| ||||||||| Sbjct 371 TCTTCCAGCTGTTTTCCTGCAAAAATAAGCCTCTGTTGGTCAGGAGGAATGCCTTCTTTG 312 Query 15269 TCACAAAT-TTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAAT 15327 || ||| ||||| ||| ||| ||||||| ||||| | ||| || || || || || Sbjct 311 TCTTGAATCTTTGC-CTTAACATTTTCTATTGTATCAGAAGCTTCCACTTCCAAAGTGAT 253 Query 15328 GGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCAT 15363 ||||| || ||||| || ||||||||||||||||| Sbjct 252 AGTTTTGCCAGTCAGTGTCTTTACAAAAATTTGCAT 217 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 360956139290103