Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Heliconius_20pachinus_20[genbank_20GCA_5F900068735.1_202017-04-26] 277,083 sequences; 279,264,790 total letters Query= NC_004778.3 Length=129593 Score E Sequences producing significant alignments: (Bits) Value seq10526 165 7e-36 seq133356 98.7 8e-16 seq28654 96.9 3e-15 seq27511 96.9 3e-15 seq76306 89.7 4e-13 >seq10526 Length=5062 Score = 165 bits (182), Expect = 7e-36 Identities = 593/913 (65%), Gaps = 37/913 (4%) Strand=Plus/Plus Query 100328 TAATCGACAACGCCGTCTTCCCAAGTGCCGGTCACGGGCCCGGCAGCTGTGCCTGTGAA- 100386 || || || || ||||||| |||||| || | || || || | ||| |||||||||| Sbjct 3168 TAGTCAACCACTCCGTCTTGCCAAGTTCCTTTGACAGGTCCAGTAGCGTTGCCTGTGAAG 3227 Query 100387 --ATAGTTGTCACCGTCATAGCCCGCCACGCCTGTCCAACCGCGGCCGTACATGGCAACG 100444 | |||||| ||| || | ||||| ||||| || || || ||||| ||||| Sbjct 3228 GGAATGTTGTCTTCGTAAT---CATGAACGCCAGTCCAGCCACGACCATACATAGCAACA 3284 Query 100445 CCCACAATAATTTTGCGCGGGTCCACGCCCTGGTTCGTGAGCAA---TTTCACGGCGTGA 100501 || || | ||| || || | ||| ||||| || ||||| ||| || | Sbjct 3285 CCTACTACAATCTTCTTAGGATTCACTCCCTG---CGCCAGCAAGTATTTTACTCCAAAG 3341 Query 100502 TCCGTGTTGTACAGCTCGTTCGGGTTCCAACTCGGCGCGTAGAGAGTGGTTTGGTAGCCC 100561 || | |||| || || || ||||| |||||||| | | ||||| | | || Sbjct 3342 TCAGATGTGTAAGTTTCCTTGGGATTCCACGCAGGCGCGTACAATGGCGTTTGAT-GTCC 3400 Query 100562 AA----ATCGGTGTTTGACCAGGCGCCTTTAAAATCGTAGCTCAT-AAGAAATATTTTAT 100616 || ||| ||||||||||| || || || ||||| ||||| |||||| || | || Sbjct 3401 AAGAGTATCA---TTTGACCAGGCTCCCTTGAAGTCGTAACTCATCAAGAAA-ATATGAT 3456 Query 100617 CGAGAAGCTTTTGCGCAACGTCGTACTGTACCACAGCAATTTTGTCATAGCCGGAACTGA 100676 | | | ||||| || | || | || || ||||| || | || | || | Sbjct 3457 CCATATAATTTTGAGCCTTACCATAGTCAACAACTTGGATTTTATCCCATCCAGCGCTAA 3516 Query 100677 TTGCGCTTGTCAACTCGTACGTTTTGCCCGTTT--GCAGTTGTAGCTGGTCCAGCATCGC 100734 | || || || ||||| | || || | | |||| |||| || |||||| | Sbjct 3517 TAGCAGAAGTTAATTCGTATTTCTTACCATTCTTAGCAGAG--AGCTCATCGAGCATCTC 3574 Query 100735 GCGCAATTCCTTCAGTAAAATGTTGTACGTGTCGGCGTCGCGCTCCCCGTTGCCAAGAGT 100794 || ||||| |||| ||| | || || | || || | | || || || Sbjct 3575 ACGTAATTCTTTCATCAAACTTACATAACAATCACCATCT---TCTGGGCTACCGAG-GT 3630 Query 100795 C-GGGTTGGCGCCTTTGCCGCCCGGAAACTCCCAGTCAATGTCCACGCCGTCAAAAAACT 100853 | ||||| || |||||||| || || |||||||| || || || || || || || || | Sbjct 3631 CAGGGTTAGCACCTTTGCCACCAGGGAACTCCCAATCGATATCAACACCATCGAAGAATT 3690 Query 100854 TCCACACCTGCAAAAATTCCTTGACCGAGTCCACAAACACGCGCCGTTTTTCCGCATCGT 100913 |||| | | ||| ||||| || || | |||||| || | | | | | || Sbjct 3691 TCCATGTTAGAAGAAACTCCTTTACTGACTGCACAAAT---CGTGTTCTCTTAGATTTGT 3747 Query 100914 GCATGAAATAGAAC---GGGTCGGACAACGTCCAGCCGCCGATGGACGGCAGAATTTTGA 100970 | ||| |||| || |||| | |||||| || || || || || ||||| || | Sbjct 3748 CAACTAAAAAGAAGAAAGGATCGGCAAGCGTCCACCCACCAATAGAGGGAAGAATCTTCA 3807 Query 100971 GGTGCGGATTGGCCAGCTTGGCCGCCATTAGCTGACCGAAATTGCCCTTGTACGGCTCGT 101030 | || ||| | || | ||||| || || || ||||| ||||| ||||||| Sbjct 3808 ATTCAGGGCGGGCTTGTTTTAGTGACATTAATTGGCCAAAGTTGCCTTTGTAGGGCTCGT 3867 Query 101031 TCCATGCGGACACGCCCTTTTGCGGTTTTTGTATTGCGGCCCAGGGATCGTGAATGGCGA 101090 |||||| |||| || ||||| |||||||||| ||| ||||| |||||||| || | || Sbjct 3868 TCCATGAAGACAATCCTTTTTGTGGTTTTTGTAATGCTGCCCATGGATCGTGGATTGAGA 3927 Query 101091 CTTTGAAATCTGAACGACCCTTGCAGGAGCGCTGCAGCGCTTCAAAACTGCCGGGAATGG 101150 ||||||| || ||| || | ||||| ||||| || |||| |||||||| || Sbjct 3928 CTTTGAAGTCCTCACGGCCGCTACAGGATCGCTGTAGTGCTTGGAAACTGCCTTCGATCT 3987 Query 101151 TTTTGAGGGCGTCGTTGAGGCCGTCGCCGCCGCAAATGGGTATGAACCCGTACAACAGAT 101210 ||| | || || | |||||| ||||||||||| || || || ||||| | || || Sbjct 3988 CTTTTAAACTATCATTAATGCCGTCACCGCCGCAAATTGGAATAAAGCCGTAGAGCAAAT 4047 Query 101211 GCGAGAGATTGGG 101223 | | ||||| || Sbjct 4048 GAGTAAGATTAGG 4060 >seq133356 Length=434 Score = 98.7 bits (108), Expect = 8e-16 Identities = 102/134 (76%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 25230 CGCAAAAACGGGCATTGCGGCGCCCATTTTTGATGATCGCGAGCCGGGTCGTCGCCCGCC 25289 |||| || ||||| || |||||||| || || || || || ||||||||||| Sbjct 91 CGCAGGAAAGGGCACTGAGGCGCCCAGCGCTGGTGGTCCTTGGCGGGATCGTCGCCCGCA 150 Query 25290 TCCCAGCGCATAATCTCCACTTTGCAAAACGCGCAGCGCACTTCGTCGCCGCGTCCCAAG 25349 |||| |||||| || ||||| |||||||||||||| ||||| |||||||| |||| Sbjct 151 ACCCATTTCATAATTTCTACTTTACAAAACGCGCAGCGTACTTCATCGCCGCGGCCCAGA 210 Query 25350 TAGTAGAACCCATT 25363 || ||||| ||||| Sbjct 211 TAATAGAAGCCATT 224 >seq28654 Length=3315 Score = 96.9 bits (106), Expect = 3e-15 Identities = 140/198 (71%), Gaps = 0/198 (0%) Strand=Plus/Plus Query 18845 GTAGACTCCTTTTGAATATTGTAATCCGCCATTGTTTTGGCGTCCTCCAGCTGTTTACCC 18904 ||||| |||||||||||||| ||||| | | ||| | | || ||||| ||||| || Sbjct 2190 GTAGATTCCTTTTGAATATTATAATCAGATAATGTACGGCCATCTTCCAGTTGTTTTCCA 2249 Query 18905 GCATAAATAAGTCTCTGCTGATCCACGGGCACGCCCTCTTTGTCGGCAATTTTCTGTTTT 18964 ||| ||||||| ||||| ||||| ||| | ||||||||||| || || || Sbjct 2250 GCAAAAATAAGCCTCTGTTGATCTGGGGGAATACCCTCTTTGTCTTGGATCTTTGCCTTC 2309 Query 18965 ACCTGGCCGACAGTATCGCCAGGCTCCGTTTCGACGGTAATGGTTTTACCTGTTAAAGTT 19024 || | ||| ||| ||| ||||| || | || |||||||| ||||| | ||| Sbjct 2310 ACATTTTCGATAGTGTCGGACGGCTCTACCTCTAAAGTGATGGTTTTTCCTGTAAGAGTC 2369 Query 19025 TTGACAAAAATTTGCATT 19042 || ||||| || |||||| Sbjct 2370 TTAACAAAGATCTGCATT 2387 Score = 95.1 bits (104), Expect = 1e-14 Identities = 139/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 18845 GTAGACTCCTTTTGAATATTGTAATCCGCCATTGTTTTGGCGTCCTCCAGCTGTTTACCC 18904 |||||||||||||| || ||||| || | | || | || |||| || ||||| Sbjct 1734 GTAGACTCCTTTTGGATGTTGTAGTCAGAGAGGGTGCGACCATCTTCCAATTGCTTACCA 1793 Query 18905 GCATAAATAAGTCTCTGCTGATCCACGGGCACGCCCTCTTTGTCGGCAATTTTCTGTTTT 18964 ||| | ||||| | ||||||||| || | |||||||||||| ||||| |||| Sbjct 1794 GCAAAGATAAGACGCTGCTGATCAGGTGGGATGCCCTCTTTGTCTTGGATTTTAGCTTTT 1853 Query 18965 ACCTGGCCGACAGTATCGCCAGGCTCCGTTTCGACGGTAATGGTTTTACCTGTTAAAGTT 19024 || | | | |||||| || ||| ||| | ||||||||| || || |||| ||| Sbjct 1854 ACATTTTCAATAGTATCAGAGGGTTCCACTTCCAGGGTAATGGTCTTTCCAGTTAGGGTT 1913 Query 19025 TTGACAAAAATTTGCAT 19041 || |||||||| ||||| Sbjct 1914 TTAACAAAAATCTGCAT 1930 >seq27511 Length=800 Score = 96.9 bits (106), Expect = 3e-15 Identities = 148/211 (70%), Gaps = 0/211 (0%) Strand=Plus/Minus Query 18832 CACCATGTGCAACGTAGACTCCTTTTGAATATTGTAATCCGCCATTGTTTTGGCGTCCTC 18891 ||||| |||||| ||||| ||||| |||||||| ||||| | || ||| | || || Sbjct 426 CACCAAGTGCAAAGTAGATTCCTTCTGAATATTATAATCTGACAATGTACGTCCATCTTC 367 Query 18892 CAGCTGTTTACCCGCATAAATAAGTCTCTGCTGATCCACGGGCACGCCCTCTTTGTCGGC 18951 ||||||||| || ||| ||||||| ||||| || || || | ||| |||||||| Sbjct 366 CAGCTGTTTTCCTGCAAAAATAAGCCTCTGTTGGTCAGGAGGAATGCCTTCTTTGTCTTG 307 Query 18952 AATTTTCTGTTTTACCTGGCCGACAGTATCGCCAGGCTCCGTTTCGACGGTAATGGTTTT 19011 ||| || || || | | | ||||| || ||| ||| | || || ||||| Sbjct 306 AATCTTTGCCTTAACATTTTCTATTGTATCAGAAGCTTCCACTTCCAAAGTGATAGTTTT 247 Query 19012 ACCTGTTAAAGTTTTGACAAAAATTTGCATT 19042 || || | || || ||||||||||||||| Sbjct 246 GCCAGTCAGTGTCTTTACAAAAATTTGCATT 216 Score = 96.9 bits (106), Expect = 3e-15 Identities = 162/234 (69%), Gaps = 8/234 (3%) Strand=Plus/Minus Query 18813 TTCCTCCTCGCAACCTTAACACCATGTGCAACGTAGACTCCTTTTGAATATTGTAATCCG 18872 |||| |||| || || | |||| |||||| || || ||||| ||||||||||| || | Sbjct 673 TTCCACCTCTCAGCCGCAGTACCAGGTGCAAAGTTGATTCCTTCTGAATATTGTAGTCAG 614 Query 18873 CCATTGTTTTGGCGTCC----TCCAGCTGTTTACCCGCATAAATAAGTCTCTGCTGATCC 18928 | ||| |||||| || ||||| || || ||| |||||||||| |||||||| Sbjct 613 ATAGTGT----GCGTCCATCTTCAAGCTGCTTTCCAGCAAAAATAAGTCTTTGCTGATCT 558 Query 18929 ACGGGCACGCCCTCTTTGTCGGCAATTTTCTGTTTTACCTGGCCGACAGTATCGCCAGGC 18988 ||| | |||||||| || ||||||| || || | | | ||||| || Sbjct 557 GGGGGAATACCCTCTTTATCCTGAATTTTCGCCTTAACATTTTCAATTGTATCAGAAGCT 498 Query 18989 TCCGTTTCGACGGTAATGGTTTTACCTGTTAAAGTTTTGACAAAAATTTGCATT 19042 ||| ||| | || || || || || || | || || ||||||||||||||| Sbjct 497 TCCACTTCCAAAGTGATAGTCTTGCCAGTCAGTGTCTTTACAAAAATTTGCATT 444 >seq76306 Length=316 Score = 89.7 bits (98), Expect = 4e-13 Identities = 157/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 18830 AACACCATGTGCAACGTAGACTCCTTTTGAATATTGTAATCCGCCATTGTTTTGGCGTCC 18889 || || | |||||| ||||| ||||| || ||||| || || | || ||| | || Sbjct 268 AAAACTAAGTGCAAAGTAGATTCCTTCTGGATATTATAGTCTGACAATGTGCGCCCATCT 209 Query 18890 TCCAGCTGTTTACCCGCATAAATAAGTCTCTGCTGATCCACGGGCACGCCCTCTTTGTCG 18949 ||||| || || || || |||| ||||| || ||||| || | ||| || ||||| Sbjct 208 TCCAGTTGCTTTCCGGCGAAAATCAGTCTTTGTTGATCTGGAGGAATGCCTTCCTTGTCT 149 Query 18950 GCAATTTTCTGTTTTACCTGGCCGACAGTATCGCCAGGCTCCGTTTCGACGGTAATGGTT 19009 ||| || ||||| | ||| ||||| || ||| ||| | || |||||| Sbjct 148 TGAATCTTTGCCTTTACGTTTTCGATTGTATCAGAAGCTTCCACTTCCAATGTGATGGTT 89 Query 19010 TTACCTGTTAAAGTTTTGACAAAAATTTGCATTTTAAATCTCTTATAAA 19058 || || ||||||||||| || || |||||||| | ||||| | | ||| Sbjct 88 TTCCCAGTTAAAGTTTTTACGAAGATTTGCATGATGAATCTGTAAAAAA 40 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 413172808771702