Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Heliconius_20pachinus_20[genbank_20GCA_5F900068735.1_202017-04-26]
277,083 sequences; 279,264,790 total letters
Query= NC_004778.3
Length=129593
Score E
Sequences producing significant alignments: (Bits) Value
seq10526 165 7e-36
seq133356 98.7 8e-16
seq28654 96.9 3e-15
seq27511 96.9 3e-15
seq76306 89.7 4e-13
>seq10526
Length=5062
Score = 165 bits (182), Expect = 7e-36
Identities = 593/913 (65%), Gaps = 37/913 (4%)
Strand=Plus/Plus
Query 100328 TAATCGACAACGCCGTCTTCCCAAGTGCCGGTCACGGGCCCGGCAGCTGTGCCTGTGAA- 100386
|| || || || ||||||| |||||| || | || || || | ||| ||||||||||
Sbjct 3168 TAGTCAACCACTCCGTCTTGCCAAGTTCCTTTGACAGGTCCAGTAGCGTTGCCTGTGAAG 3227
Query 100387 --ATAGTTGTCACCGTCATAGCCCGCCACGCCTGTCCAACCGCGGCCGTACATGGCAACG 100444
| |||||| ||| || | ||||| ||||| || || || ||||| |||||
Sbjct 3228 GGAATGTTGTCTTCGTAAT---CATGAACGCCAGTCCAGCCACGACCATACATAGCAACA 3284
Query 100445 CCCACAATAATTTTGCGCGGGTCCACGCCCTGGTTCGTGAGCAA---TTTCACGGCGTGA 100501
|| || | ||| || || | ||| ||||| || ||||| ||| || |
Sbjct 3285 CCTACTACAATCTTCTTAGGATTCACTCCCTG---CGCCAGCAAGTATTTTACTCCAAAG 3341
Query 100502 TCCGTGTTGTACAGCTCGTTCGGGTTCCAACTCGGCGCGTAGAGAGTGGTTTGGTAGCCC 100561
|| | |||| || || || ||||| |||||||| | | ||||| | | ||
Sbjct 3342 TCAGATGTGTAAGTTTCCTTGGGATTCCACGCAGGCGCGTACAATGGCGTTTGAT-GTCC 3400
Query 100562 AA----ATCGGTGTTTGACCAGGCGCCTTTAAAATCGTAGCTCAT-AAGAAATATTTTAT 100616
|| ||| ||||||||||| || || || ||||| ||||| |||||| || | ||
Sbjct 3401 AAGAGTATCA---TTTGACCAGGCTCCCTTGAAGTCGTAACTCATCAAGAAA-ATATGAT 3456
Query 100617 CGAGAAGCTTTTGCGCAACGTCGTACTGTACCACAGCAATTTTGTCATAGCCGGAACTGA 100676
| | | ||||| || | || | || || ||||| || | || | || |
Sbjct 3457 CCATATAATTTTGAGCCTTACCATAGTCAACAACTTGGATTTTATCCCATCCAGCGCTAA 3516
Query 100677 TTGCGCTTGTCAACTCGTACGTTTTGCCCGTTT--GCAGTTGTAGCTGGTCCAGCATCGC 100734
| || || || ||||| | || || | | |||| |||| || |||||| |
Sbjct 3517 TAGCAGAAGTTAATTCGTATTTCTTACCATTCTTAGCAGAG--AGCTCATCGAGCATCTC 3574
Query 100735 GCGCAATTCCTTCAGTAAAATGTTGTACGTGTCGGCGTCGCGCTCCCCGTTGCCAAGAGT 100794
|| ||||| |||| ||| | || || | || || | | || || ||
Sbjct 3575 ACGTAATTCTTTCATCAAACTTACATAACAATCACCATCT---TCTGGGCTACCGAG-GT 3630
Query 100795 C-GGGTTGGCGCCTTTGCCGCCCGGAAACTCCCAGTCAATGTCCACGCCGTCAAAAAACT 100853
| ||||| || |||||||| || || |||||||| || || || || || || || || |
Sbjct 3631 CAGGGTTAGCACCTTTGCCACCAGGGAACTCCCAATCGATATCAACACCATCGAAGAATT 3690
Query 100854 TCCACACCTGCAAAAATTCCTTGACCGAGTCCACAAACACGCGCCGTTTTTCCGCATCGT 100913
|||| | | ||| ||||| || || | |||||| || | | | | | ||
Sbjct 3691 TCCATGTTAGAAGAAACTCCTTTACTGACTGCACAAAT---CGTGTTCTCTTAGATTTGT 3747
Query 100914 GCATGAAATAGAAC---GGGTCGGACAACGTCCAGCCGCCGATGGACGGCAGAATTTTGA 100970
| ||| |||| || |||| | |||||| || || || || || ||||| || |
Sbjct 3748 CAACTAAAAAGAAGAAAGGATCGGCAAGCGTCCACCCACCAATAGAGGGAAGAATCTTCA 3807
Query 100971 GGTGCGGATTGGCCAGCTTGGCCGCCATTAGCTGACCGAAATTGCCCTTGTACGGCTCGT 101030
| || ||| | || | ||||| || || || ||||| ||||| |||||||
Sbjct 3808 ATTCAGGGCGGGCTTGTTTTAGTGACATTAATTGGCCAAAGTTGCCTTTGTAGGGCTCGT 3867
Query 101031 TCCATGCGGACACGCCCTTTTGCGGTTTTTGTATTGCGGCCCAGGGATCGTGAATGGCGA 101090
|||||| |||| || ||||| |||||||||| ||| ||||| |||||||| || | ||
Sbjct 3868 TCCATGAAGACAATCCTTTTTGTGGTTTTTGTAATGCTGCCCATGGATCGTGGATTGAGA 3927
Query 101091 CTTTGAAATCTGAACGACCCTTGCAGGAGCGCTGCAGCGCTTCAAAACTGCCGGGAATGG 101150
||||||| || ||| || | ||||| ||||| || |||| |||||||| ||
Sbjct 3928 CTTTGAAGTCCTCACGGCCGCTACAGGATCGCTGTAGTGCTTGGAAACTGCCTTCGATCT 3987
Query 101151 TTTTGAGGGCGTCGTTGAGGCCGTCGCCGCCGCAAATGGGTATGAACCCGTACAACAGAT 101210
||| | || || | |||||| ||||||||||| || || || ||||| | || ||
Sbjct 3988 CTTTTAAACTATCATTAATGCCGTCACCGCCGCAAATTGGAATAAAGCCGTAGAGCAAAT 4047
Query 101211 GCGAGAGATTGGG 101223
| | ||||| ||
Sbjct 4048 GAGTAAGATTAGG 4060
>seq133356
Length=434
Score = 98.7 bits (108), Expect = 8e-16
Identities = 102/134 (76%), Gaps = 0/134 (0%)
Strand=Plus/Plus
Query 25230 CGCAAAAACGGGCATTGCGGCGCCCATTTTTGATGATCGCGAGCCGGGTCGTCGCCCGCC 25289
|||| || ||||| || |||||||| || || || || || |||||||||||
Sbjct 91 CGCAGGAAAGGGCACTGAGGCGCCCAGCGCTGGTGGTCCTTGGCGGGATCGTCGCCCGCA 150
Query 25290 TCCCAGCGCATAATCTCCACTTTGCAAAACGCGCAGCGCACTTCGTCGCCGCGTCCCAAG 25349
|||| |||||| || ||||| |||||||||||||| ||||| |||||||| ||||
Sbjct 151 ACCCATTTCATAATTTCTACTTTACAAAACGCGCAGCGTACTTCATCGCCGCGGCCCAGA 210
Query 25350 TAGTAGAACCCATT 25363
|| ||||| |||||
Sbjct 211 TAATAGAAGCCATT 224
>seq28654
Length=3315
Score = 96.9 bits (106), Expect = 3e-15
Identities = 140/198 (71%), Gaps = 0/198 (0%)
Strand=Plus/Plus
Query 18845 GTAGACTCCTTTTGAATATTGTAATCCGCCATTGTTTTGGCGTCCTCCAGCTGTTTACCC 18904
||||| |||||||||||||| ||||| | | ||| | | || ||||| ||||| ||
Sbjct 2190 GTAGATTCCTTTTGAATATTATAATCAGATAATGTACGGCCATCTTCCAGTTGTTTTCCA 2249
Query 18905 GCATAAATAAGTCTCTGCTGATCCACGGGCACGCCCTCTTTGTCGGCAATTTTCTGTTTT 18964
||| ||||||| ||||| ||||| ||| | ||||||||||| || || ||
Sbjct 2250 GCAAAAATAAGCCTCTGTTGATCTGGGGGAATACCCTCTTTGTCTTGGATCTTTGCCTTC 2309
Query 18965 ACCTGGCCGACAGTATCGCCAGGCTCCGTTTCGACGGTAATGGTTTTACCTGTTAAAGTT 19024
|| | ||| ||| ||| ||||| || | || |||||||| ||||| | |||
Sbjct 2310 ACATTTTCGATAGTGTCGGACGGCTCTACCTCTAAAGTGATGGTTTTTCCTGTAAGAGTC 2369
Query 19025 TTGACAAAAATTTGCATT 19042
|| ||||| || ||||||
Sbjct 2370 TTAACAAAGATCTGCATT 2387
Score = 95.1 bits (104), Expect = 1e-14
Identities = 139/197 (71%), Gaps = 0/197 (0%)
Strand=Plus/Plus
Query 18845 GTAGACTCCTTTTGAATATTGTAATCCGCCATTGTTTTGGCGTCCTCCAGCTGTTTACCC 18904
|||||||||||||| || ||||| || | | || | || |||| || |||||
Sbjct 1734 GTAGACTCCTTTTGGATGTTGTAGTCAGAGAGGGTGCGACCATCTTCCAATTGCTTACCA 1793
Query 18905 GCATAAATAAGTCTCTGCTGATCCACGGGCACGCCCTCTTTGTCGGCAATTTTCTGTTTT 18964
||| | ||||| | ||||||||| || | |||||||||||| ||||| ||||
Sbjct 1794 GCAAAGATAAGACGCTGCTGATCAGGTGGGATGCCCTCTTTGTCTTGGATTTTAGCTTTT 1853
Query 18965 ACCTGGCCGACAGTATCGCCAGGCTCCGTTTCGACGGTAATGGTTTTACCTGTTAAAGTT 19024
|| | | | |||||| || ||| ||| | ||||||||| || || |||| |||
Sbjct 1854 ACATTTTCAATAGTATCAGAGGGTTCCACTTCCAGGGTAATGGTCTTTCCAGTTAGGGTT 1913
Query 19025 TTGACAAAAATTTGCAT 19041
|| |||||||| |||||
Sbjct 1914 TTAACAAAAATCTGCAT 1930
>seq27511
Length=800
Score = 96.9 bits (106), Expect = 3e-15
Identities = 148/211 (70%), Gaps = 0/211 (0%)
Strand=Plus/Minus
Query 18832 CACCATGTGCAACGTAGACTCCTTTTGAATATTGTAATCCGCCATTGTTTTGGCGTCCTC 18891
||||| |||||| ||||| ||||| |||||||| ||||| | || ||| | || ||
Sbjct 426 CACCAAGTGCAAAGTAGATTCCTTCTGAATATTATAATCTGACAATGTACGTCCATCTTC 367
Query 18892 CAGCTGTTTACCCGCATAAATAAGTCTCTGCTGATCCACGGGCACGCCCTCTTTGTCGGC 18951
||||||||| || ||| ||||||| ||||| || || || | ||| ||||||||
Sbjct 366 CAGCTGTTTTCCTGCAAAAATAAGCCTCTGTTGGTCAGGAGGAATGCCTTCTTTGTCTTG 307
Query 18952 AATTTTCTGTTTTACCTGGCCGACAGTATCGCCAGGCTCCGTTTCGACGGTAATGGTTTT 19011
||| || || || | | | ||||| || ||| ||| | || || |||||
Sbjct 306 AATCTTTGCCTTAACATTTTCTATTGTATCAGAAGCTTCCACTTCCAAAGTGATAGTTTT 247
Query 19012 ACCTGTTAAAGTTTTGACAAAAATTTGCATT 19042
|| || | || || |||||||||||||||
Sbjct 246 GCCAGTCAGTGTCTTTACAAAAATTTGCATT 216
Score = 96.9 bits (106), Expect = 3e-15
Identities = 162/234 (69%), Gaps = 8/234 (3%)
Strand=Plus/Minus
Query 18813 TTCCTCCTCGCAACCTTAACACCATGTGCAACGTAGACTCCTTTTGAATATTGTAATCCG 18872
|||| |||| || || | |||| |||||| || || ||||| ||||||||||| || |
Sbjct 673 TTCCACCTCTCAGCCGCAGTACCAGGTGCAAAGTTGATTCCTTCTGAATATTGTAGTCAG 614
Query 18873 CCATTGTTTTGGCGTCC----TCCAGCTGTTTACCCGCATAAATAAGTCTCTGCTGATCC 18928
| ||| |||||| || ||||| || || ||| |||||||||| ||||||||
Sbjct 613 ATAGTGT----GCGTCCATCTTCAAGCTGCTTTCCAGCAAAAATAAGTCTTTGCTGATCT 558
Query 18929 ACGGGCACGCCCTCTTTGTCGGCAATTTTCTGTTTTACCTGGCCGACAGTATCGCCAGGC 18988
||| | |||||||| || ||||||| || || | | | ||||| ||
Sbjct 557 GGGGGAATACCCTCTTTATCCTGAATTTTCGCCTTAACATTTTCAATTGTATCAGAAGCT 498
Query 18989 TCCGTTTCGACGGTAATGGTTTTACCTGTTAAAGTTTTGACAAAAATTTGCATT 19042
||| ||| | || || || || || || | || || |||||||||||||||
Sbjct 497 TCCACTTCCAAAGTGATAGTCTTGCCAGTCAGTGTCTTTACAAAAATTTGCATT 444
>seq76306
Length=316
Score = 89.7 bits (98), Expect = 4e-13
Identities = 157/229 (69%), Gaps = 0/229 (0%)
Strand=Plus/Minus
Query 18830 AACACCATGTGCAACGTAGACTCCTTTTGAATATTGTAATCCGCCATTGTTTTGGCGTCC 18889
|| || | |||||| ||||| ||||| || ||||| || || | || ||| | ||
Sbjct 268 AAAACTAAGTGCAAAGTAGATTCCTTCTGGATATTATAGTCTGACAATGTGCGCCCATCT 209
Query 18890 TCCAGCTGTTTACCCGCATAAATAAGTCTCTGCTGATCCACGGGCACGCCCTCTTTGTCG 18949
||||| || || || || |||| ||||| || ||||| || | ||| || |||||
Sbjct 208 TCCAGTTGCTTTCCGGCGAAAATCAGTCTTTGTTGATCTGGAGGAATGCCTTCCTTGTCT 149
Query 18950 GCAATTTTCTGTTTTACCTGGCCGACAGTATCGCCAGGCTCCGTTTCGACGGTAATGGTT 19009
||| || ||||| | ||| ||||| || ||| ||| | || ||||||
Sbjct 148 TGAATCTTTGCCTTTACGTTTTCGATTGTATCAGAAGCTTCCACTTCCAATGTGATGGTT 89
Query 19010 TTACCTGTTAAAGTTTTGACAAAAATTTGCATTTTAAATCTCTTATAAA 19058
|| || ||||||||||| || || |||||||| | ||||| | | |||
Sbjct 88 TTCCCAGTTAAAGTTTTTACGAAGATTTGCATGATGAATCTGTAAAAAA 40
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 413172808771702
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |