Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Heliconius_20pachinus_20[genbank_20GCA_5F900068735.1_202017-04-26] 277,083 sequences; 279,264,790 total letters Query= NC_004813.1 Length=57930 Score E Sequences producing significant alignments: (Bits) Value seq67190 125 3e-24 >seq67190 Length=2338 Score = 125 bits (138), Expect = 3e-24 Identities = 472/720 (66%), Gaps = 48/720 (7%) Strand=Plus/Minus Query 52561 TGAAAGAGCTGGAGCGTGAAAATCGTGAACTGCGCCGCAGT--AACGATATCCTTCGCCA 52618 |||| | |||||| || || || |||||||| |||| ||||| ||||| ||| | Sbjct 2009 TGAAGGCGCTGGAACGCGAGGTCCGCGAACTGCG--GCAGGCCAACGAAATCCTGCGCAA 1952 Query 52619 GGCTTCCGCTTATTTTGCGAAGGCGGAGTTCGACCGCC---TCTGGAAAAAATGATGCCA 52675 ||| || || ||||| ||| |||||||| ||||||||| || || | |||| | Sbjct 1951 GGCATCGGCATATTTCGCGCAGGCGGAGCTCGACCGCCCGTTCCGGCGA---TGATCGCT 1895 Query 52676 CTGCTGGATAAGCTGCGTGAGCAGTACGGGGTCGGACCGCTATGCAGCGAACTGCATATT 52735 | | || | | || || || ||||||| ||| | ||| | | |||| || Sbjct 1894 TTCATTGACGATCACCGCGATGCCTATGGGGTCGAGCCGATCTGCCGTGTCCTGCCGATC 1835 Query 52736 GCCCCGTCAACGTATTAC---CACTGTCAGCAACAGCGACATCATCCGGATAAACGCAGT 52792 ||||| || || || ||| ||| ||| || |||||||| |||| || | || Sbjct 1834 GCCCCATCCACCTACTACGAGCAC-GTC-GCG-CAGCGACAGGATCC--ATCGCGTCTGT 1780 Query 52793 --GCCCGTGCGCAGCGCGATGA-CTGG--CTGAAGAAAGAGATACAGCGCGTATACGATG 52847 || || |||| | || || ||| || |||| ||||| ||||||| || | Sbjct 1779 CGGCACGGGCGC---GTGAGGATCTGATCCTCAAGACCGAGATCGCTCGCGTATTCGCGG 1723 Query 52848 AAAATCACAAGGTATACGGTGTGCGTAAAGTCTGGCGTCAGTTGTTACGGGAAGGTATCA 52907 | || | ||| ||||| ||||| || |||||||| ||| || | ||||| || | Sbjct 1722 AGAACTTCGCGGTCTACGGCGTGCGCAAGGTCTGGCGGCAGATGATGCGGGAGGGCTTTG 1663 Query 52908 GAGTGGCCAGATGCACTGTGGCACGTCTCATGGCGGTTATGGGACTTGCCGGTGTTCTCC 52967 || || | || || |||| ||| || ||| | ||||| | || || || ||| Sbjct 1662 CGGTCGCGCGCTGTACCGTGGAACGGCTGATGCGCGAGATGGGCTTGGCGGGGGTAATCC 1603 Query 52968 GGGGTAAAAAGGTCCGTACGACCATCAGCCGGAAA-----GCCGTTGCCGCAGGCGACCG 53022 | || || ||| || |||||||||||| ||| ||||| |||| |||| | Sbjct 1602 GCGGCAAGCCGGTGCGCACGACCATCAGCGATAAAGCGGCGCCGTGCCCGC--GCGATCA 1545 Query 53023 CGTAAACCGTCAGTTCGTGGCAGAACGACCTGACCAGCTGTGGGTGGCTGATTTTACTTA 53082 ||| ||||| |||||| || | || || |||||||||| | || ||||| || Sbjct 1544 CGTCAACCGGCAGTTCTACGCCCCAGCGCCGAACATGCTGTGGGTGTCGGACTTTACCTA 1485 Query 53083 CGTCAGCACATGGCAGGGCTTCGTCTATGTGGCGTTCATCATTGATGTGTTTGCCGGATA 53142 |||| || ||| ||| |||||||| || || ||| |||| || | ||| | Sbjct 1484 CGTCGCAACTTGGGCGGGGTTCGTCTACGTCGCCTTCGTCATCGACACCTACGCCCGCCG 1425 Query 53143 CATTGTGGGGTGGCGGGTC-TCATCGTCCATGGAGACGACA--TTCGTGCTGGATGCACT 53199 || || || ||||| | | || | || | | | | || ||||| ||||||||||| Sbjct 1424 AATCGTCGGATGGCGTGCCAGCA--GGACA-GCACATGCCAGCTTCGTCCTGGATGCACT 1368 Query 53200 GGAGCAGGCG--TTATG------GGCCCGTCGACCGT-CCGGCACGGTCCATCACAGTGA 53250 ||||||||| | ||| |||| ||| ||||| |||| ||| || ||||| || Sbjct 1367 CGAGCAGGCGCTTCATGACCGCAGGCCAGTCCACCGTGGCGGCTTGGTTCACCACAGCGA 1308 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 184644846216632