Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Heliconius_20pachinus_20[genbank_20GCA_5F900068735.1_202017-04-26] 277,083 sequences; 279,264,790 total letters Query= NC_005068.1 Length=110907 Score E Sequences producing significant alignments: (Bits) Value seq41046 104 2e-17 seq28654 102 6e-17 seq27511 87.8 1e-12 >seq41046 Length=7774 Score = 104 bits (114), Expect = 2e-17 Identities = 139/192 (72%), Gaps = 1/192 (1%) Strand=Plus/Plus Query 43931 TCTTTTTGAATATTATAATCGTTTAATTGACGCTCATCGTCCAATTGTTTTCCTGCAAAT 43990 || |||||||| || || || ||| ||| |||| || | |||||| || ||||| Sbjct 7191 TCCTTTTGAATGTTGTAGTCAGACAATGTACGTCCATCTTCTAGTTGTTTACCAGCAAAG 7250 Query 43991 ATCAACCGTTGCTGGTCCTGAGGTACACCTTCTTTATCTGAAATTTTTTGTTTGACCA-T 44049 ||||| ||||||||||| | || | |||||| |||||| ||||| ||| | || | Sbjct 7251 ATCAAACGTTGCTGGTCTGGTGGAATACCTTCCTTATCTTGGATTTTAGCTTTTAACATT 7310 Query 44050 AGCAACAGTATCTGCCGGCTCCACATCGACCGTAATTGTTTTACCGGTTAAAGTCTTCAC 44109 | | |||||| | | |||||| |||| ||||| |||||||| || | ||||| || Sbjct 7311 TTCTATAGTATCAGAGGCCTCCACCTCGAGGGTAATGGTTTTACCCGTAAGGGTCTTGAC 7370 Query 44110 AAATATTTGCAT 44121 || |||||||| Sbjct 7371 GAAAATTTGCAT 7382 >seq28654 Length=3315 Score = 102 bits (112), Expect = 6e-17 Identities = 163/230 (71%), Gaps = 3/230 (1%) Strand=Plus/Plus Query 43910 AACACCAAATGTAGCGTGCTCTCTTTTTGAATATTATAATC-GTTTAATTGACGCTCATC 43968 || ||||| || || || ||||||||||||||||| || | | || || | || Sbjct 2403 AATACCAAGTGAAGAGTAGATTCTTTTTGAATATTATAGTCAGAAAGAGTG-CGTCCGTC 2461 Query 43969 GTCCAATTGTTTTCCTGCAAATATCAACCGTTGCTGGTCCTGAGGTACACCTTCTTTATC 44028 |||||||| ||||| || || ||||| ||||| || || |||| | ||||| || || Sbjct 2462 TTCCAATTGCTTTCCAGCGAAAATCAAACGTTGTTGATCTGGAGGAATGCCTTCCTTGTC 2521 Query 44029 TGAAATTTTTTGTTTGACCATAGCAACAGTATCTGCCGGCTCCACATCGACCGTAATTGT 44088 | |||||| ||| || | ||| |||||| | || || || || | ||||| || Sbjct 2522 TTGAATTTTGGCTTTTACATTTTCAATAGTATCGGAAGGTTCAACTTCCAAAGTAATGGT 2581 Query 44089 TTTACCGGTTAAAGTCTTCACAAATATTTGCATGTCGAGTCTTTGTAACA 44138 |||||| || | || |||||||| || ||||| | || | | ||||||| Sbjct 2582 TTTACCCGTAAGTGTTTTCACAAAGATCTGCATTTTGA-TATCTGTAACA 2630 Score = 98.7 bits (108), Expect = 7e-16 Identities = 149/212 (70%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 43910 AACACCAAATGTAGCGTGCTCTCTTTTTGAATATTATAATCGTTTAATTGACGCTCATCG 43969 || || |||||||| || || ||||||||||||||||| |||| ||| |||| Sbjct 2175 AATACTAAATGTAGGGTAGATTCCTTTTGAATATTATAATCAGATAATGTACGGCCATCT 2234 Query 43970 TCCAATTGTTTTCCTGCAAATATCAACCGTTGCTGGTCCTGAGGTACACCTTCTTTATCT 44029 |||| ||||||||| ||||| || | || || || || | || | ||| ||||| ||| Sbjct 2235 TCCAGTTGTTTTCCAGCAAAAATAAGCCTCTGTTGATCTGGGGGAATACCCTCTTTGTCT 2294 Query 44030 GAAATTTTTTGTTTGACCATAGCAACAGTATCTGCCGGCTCCACATCGACCGTAATTGTT 44089 || ||| || || | | | ||| || | |||||| || || | || || ||| Sbjct 2295 TGGATCTTTGCCTTCACATTTTCGATAGTGTCGGACGGCTCTACCTCTAAAGTGATGGTT 2354 Query 44090 TTACCGGTTAAAGTCTTCACAAATATTTGCAT 44121 || || || | |||||| ||||| || ||||| Sbjct 2355 TTTCCTGTAAGAGTCTTAACAAAGATCTGCAT 2386 >seq27511 Length=800 Score = 87.8 bits (96), Expect = 1e-12 Identities = 134/191 (70%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 43931 TCTTTTTGAATATTATAATCGTTTAATTGACGCTCATCGTCCAATTGTTTTCCTGCAAAT 43990 || || |||||||||||||| ||| ||| |||| |||| |||||||||||||| Sbjct 407 TCCTTCTGAATATTATAATCTGACAATGTACGTCCATCTTCCAGCTGTTTTCCTGCAAAA 348 Query 43991 ATCAACCGTTGCTGGTCCTGAGGTACACCTTCTTTATCTGAAATTTTTTGTTTGACCATA 44050 || | || || ||||| |||| | |||||||| ||| ||| ||| || || | Sbjct 347 ATAAGCCTCTGTTGGTCAGGAGGAATGCCTTCTTTGTCTTGAATCTTTGCCTTAACATTT 288 Query 44051 GCAACAGTATCTGCCGGCTCCACATCGACCGTAATTGTTTTACCGGTTAAAGTCTTCACA 44110 | | ||||| | | ||||| || | || || ||||| || || | ||||| ||| Sbjct 287 TCTATTGTATCAGAAGCTTCCACTTCCAAAGTGATAGTTTTGCCAGTCAGTGTCTTTACA 228 Query 44111 AATATTTGCAT 44121 || |||||||| Sbjct 227 AAAATTTGCAT 217 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 353579534116284