Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Heliconius_20pachinus_20[genbank_20GCA_5F900068735.1_202017-04-26] 277,083 sequences; 279,264,790 total letters Query= NC_005839.2 Length=131680 Score E Sequences producing significant alignments: (Bits) Value seq10526 206 2e-48 seq41046 87.8 2e-12 >seq10526 Length=5062 Score = 206 bits (228), Expect = 2e-48 Identities = 782/1206 (65%), Gaps = 47/1206 (4%) Strand=Plus/Minus Query 30232 TACTTTGTAGAGTGGGGTGTTTACGACAGACAATATCCAGCAGA-CTTAGTTCCCGTCCC 30290 ||||| ||||| |||||||| || || ||| || | || | || | || | || Sbjct 4117 TACTTCGTAGAATGGGGTGTCTATCCTAGGAAATTCCCCGTGGATCGTA-TACCTATACC 4059 Query 30291 CAACCTTACGCATCTTTTGTATGGCTTTGTGCCTCTCTGCGGTGGAGATGGTATAAACGA 30350 || ||||| ||| | | || |||||| | || | ||||| || || || || || || Sbjct 4058 TAATCTTACTCATTTGCTCTACGGCTTTATTCCAATTTGCGGCGGTGACGGCATTAATGA 3999 Query 30351 TAGCTTAAAGCAAGTGCCGGGTTCGTTTGAGGCTTTACAAAAATCTTGCGCGGGTCGAGA 30410 ||| ||||| | | || || | || |||| ||| || || || || Sbjct 3998 TAGTTTAAAAGAGATCGAAGGCAGTTTCCAAGCACTACAGCGATCCTGTAGCGGCCGTGA 3939 Query 30411 GGATTTTAAAGTGACGATTCACGATATTTGGGGCGCTCTTCAAAAACCACAAAAAGGAGT 30470 ||| || ||||| | || |||||| |||| || | |||||||||||||||||| | Sbjct 3938 GGACTTCAAAGTCTCAATCCACGATCCATGGGCAGCATTACAAAAACCACAAAAAGGATT 3879 Query 30471 GGGCGCTTGGGACGATCCGTATAAAGGAAATTTTGGCCAACTGATGGCGATTAAAAGACA 30530 | | ||| |||| || || ||||| || ||||||||| | ||| | | ||||| Sbjct 3878 GTCTTCATGGAACGAGCCCTACAAAGGCAACTTTGGCCAATTAATGTC-ACTAAAA---- 3824 Query 30531 CAATCCCGACCTTAC-----GATTTTACCGTCTATTGGCGGGTGGACACTTAGCGACCCT 30585 ||| |||| ||| | |||| | || |||||||| |||||||| ||| ||| ||| Sbjct 3823 CAAGCCCGCCCTGAATTGAAGATTCTTCCCTCTATTGGTGGGTGGACGCTTGCCGATCCT 3764 Query 30586 TTCTTTAAATTGAGTTCTGCCGAA---AATCGCGC-CGTTTTCGTTGAGTCCGCACGAGA 30641 ||||| || |||| | | || || | | || ||| || |||| | | || Sbjct 3763 TTCTTCTTTTT-AGTT--GACAAATCTAAGAGAACACGATTT-GTGCAGTCAGTAAAGGA 3708 Query 30642 GTATTTGCGCACATGGAAATTTTTTGACGGACTAGACATCGACTGGGAGTTTCCGGGCGG 30701 || | | | ||||||||||| || || || | || ||||| |||||||| || || || Sbjct 3707 GTTTCTTCTAACATGGAAATTCTTCGATGGTGTTGATATCGATTGGGAGTTCCCTGGTGG 3648 Query 30702 TAAAGGTGCTAATCCCGAATTAGGAGATCCAGAAAAGGATGGAGTAACATATGTGCAGTT 30761 ||||||||||| || || | || |||||| ||||| | ||||| || Sbjct 3647 CAAAGGTGCTAACCCTGACCTCGGTAGCCCAGAA---GATGGTGATTGTTATGTAAGTTT 3591 Query 30762 ATTGAAAGAGCTCAGAGAAATGCTAAACGATCTTTCT--AAAGAAACAGGGAAAAAATAC 30819 ||||||| | | || ||||| | || || ||| ||||| || || |||||| Sbjct 3590 GATGAAAGAATTACGTGAGATGCTCGATGAGCTCTCTGCTAAGAA--TGGTAAGAAATAC 3533 Query 30820 CAGCTCACCTCGGCGATTAGCGCGGGGTACGATAAAATCTCTATAGTTAATTATGAAAAT 30879 | | || || || |||||||| || | ||||||||| | ||| | |||| || Sbjct 3532 GAATTAACTTCTGCTATTAGCGCTGGATGGGATAAAATCCAAGTTGTTGACTATGGTAAG 3473 Query 30880 GCGCAAGAGTATCTTGATCACATTTTTGTTATGACGTACGATTTTAAAGGCGCTTGGTCT 30939 || ||| | ||| | ||||| ||||| | |||| ||||| || || || || ||||| Sbjct 3472 GCTCAAAATTATATGGATCATATTTTCTTGATGAGTTACGACTTCAAGGGAGCCTGGTC- 3414 Query 30940 AACACGGACT-TGGGATATCACACTACACTTTATTCACCCTCTTGGAACGCTGAAGAAAA 30998 || ||| | ||| |||| || || | || | || | ||||| | | |||| Sbjct 3413 AAATGATACTCTTGGACATCAAACGCCATTGTACGCGCCTGCGTGGAATCCCAAGGAAAC 3354 Query 30999 ATATACTGCCGAGTACGCGACAAAGGAGTTGTTAAAACAAAACGTCAATAGTAAGAAAAT 31058 || || | || | | ||| | ||| | || || ||| |||||| || Sbjct 3353 TTACACATCTGACTTTGGAGTAAAATACTTGCTGGCGCAGGGAGTGAATCCTAAGAAGAT 3294 Query 31059 AGTGCTAGCTGTTGCAATGTACGGAAGAGGGTGGACGGGTGTGCATGACATAAAAAACAA 31118 || ||| |||||| ||||| || | || ||||| || || ||||| || |||| Sbjct 3293 TGTAGTAGGTGTTGCTATGTATGGTCGTGGCTGGACTGGCGTTCATGATTACGAAGACAA 3234 Query 31119 CAATCCCTTTACGGGTGTAGCTCAGGGGCCGATTAAAGGAACTTGGGAAAGTGGAGTTGT 31178 || |||||| || || ||| || || | |||||||||||| || ||||| || Sbjct 3233 CATTCCCTTCACAGGCAACGCTACTGGACCTGTCAAAGGAACTTGGCAAGACGGAGTGGT 3174 Query 31179 AGATTACA--AAGATT-----TGATA----CAAAGGTACACCGACACTT--ATTATGACT 31225 || |||| ||||| ||| | |||| | | | | || |||| ||| Sbjct 3173 TGACTACAGGGAGATTGCGAATGAAATTGCTCAAGGCA-AGTGGGAGTTCCATTACGACA 3115 Query 31226 CTGTAGCGCAAGCGGCATATGCGTTCGCAGAGAAT--GTTGGTGATCTACTTACTTACGA 31283 ||| || ||||| | ||| ||| |||| || ||| ||||| | || || || Sbjct 3114 ATGTCGCCCAAGCCCCCTAT--GTTTTCAGACCATCAACTGGAGATCTTGTAACCTATGA 3057 Query 31284 TAACCCAACGAGTGTGCAAGCTAAGGGAAAGTTTGTAATAGACAACAATTTGGGTGGTTT 31343 ||| | | ||| | ||||| || | ||||| | | ||||| | |||||| | Sbjct 3056 TAATGCTAGATCTGTTATTGAAAAGGGTAAATATGTAAGAAATAACAAGCTAGGTGGTCT 2997 Query 31344 GTTTGCGTGGGAACTGGACGCCGACAATGGCGACATTCTTAACAGCATGAACGAGGGTTT 31403 ||||| |||||| ||||||| || ||||| ||| | || || ||||||| |||| | Sbjct 2996 CTTTGCTTGGGAAGTGGACGCTGATAATGGTGACCTACTGAATGCCATGAACATGGGTCT 2937 Query 31404 AGGTAA 31409 ||||| Sbjct 2936 CGGTAA 2931 >seq41046 Length=7774 Score = 87.8 bits (96), Expect = 2e-12 Identities = 161/234 (69%), Gaps = 3/234 (1%) Strand=Plus/Plus Query 48499 ACCTCCGCGCAACCTTAACACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGC 48558 ||||||||| | | | ||| | ||| | |||| ||||||||||||||||| |||| Sbjct 7154 ACCTCCGCGAAGTCGAAGCACAAGATGCAATGTGGATTCCTTTTGAATGTTGTAGTCAGA 7213 Query 48559 CAATTGTCGCTCGTCCTCCAGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCGG 48618 |||| || | || || || || ||||| | | || ||||| ||||| || || Sbjct 7214 CAATGTACGTCCATCTTCTAGTTGTTTACCAGCAAAGATCAAACGTTGCTGGTCTGGTGG 7273 Query 48619 CACACTTTCCTTGTCCATAATTTT--CTGCTTGATAGACGCTATGGTATCGGTAGACTCC 48676 | || |||||| || ||||| || || | | |||| ||||| | | |||| Sbjct 7274 AATACCTTCCTTATCTTGGATTTTAGCT-TTTAACATTTTCTATAGTATCAGAGGCCTCC 7332 Query 48677 GTCTCGACTGTTATGGTTTTACCGGTGAGAGTTTTCACAAAAATCTGCATCGTG 48730 ||||| || ||||||||||| || || || || || ||||| ||||| ||| Sbjct 7333 ACCTCGAGGGTAATGGTTTTACCCGTAAGGGTCTTGACGAAAATTTGCATTGTG 7386 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 419828656155083