Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Heliconius_20pachinus_20[genbank_20GCA_5F900068735.1_202017-04-26]
277,083 sequences; 279,264,790 total letters
Query= NC_006549.1
Length=140131
Score E
Sequences producing significant alignments: (Bits) Value
seq76306 149 6e-31
seq28654 140 3e-28
seq27511 134 1e-26
seq27512 120 3e-22
seq41046 84.2 2e-11
>seq76306
Length=316
Score = 149 bits (164), Expect = 6e-31
Identities = 177/240 (74%), Gaps = 0/240 (0%)
Strand=Plus/Minus
Query 94769 AAATTTTACACTCCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACG 94828
||| ||| || ||| || || | ||||| || |||||||||||||||||||| || |
Sbjct 295 AAAATTTGCATTCCACCCCTTAGACGCAAAACTAAGTGCAAAGTAGATTCCTTCTGGATA 236
Query 94829 TTATAATCGCTCATAGTGTTGGAATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGC 94888
||||| || || ||| ||| ||||| || |||||| | || || | ||||||
Sbjct 235 TTATAGTCTGACAATGTGCGCCCATCTTCCAGTTGCTTTCCGGCGAAAATCAGTCTTTGT 176
Query 94889 TGATCTGGAGGAATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCA 94948
|||||||||||||| ||||| ||||| | ||| |||||||| ||| ||| || |||
Sbjct 175 TGATCTGGAGGAATGCCTTCCTTGTCTTGAATCTTTGCCTTTACGTTTTCGATTGTATCA 116
Query 94949 GCGTGGTCGACGTCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCATG 95008
| || || || | ||||||||||| ||||| | |||||| || ||||| ||||||
Sbjct 115 GAAGCTTCCACTTCCAATGTGATGGTTTTCCCAGTTAAAGTTTTTACGAAGATTTGCATG 56
>seq28654
Length=3315
Score = 140 bits (154), Expect = 3e-28
Identities = 162/216 (75%), Gaps = 2/216 (1%)
Strand=Plus/Plus
Query 94793 CGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATC-GCTCATAGTGTTGGA 94851
||||| || || || | |||||||||||||| | |||||||| | | || || |
Sbjct 2172 CGCAATACTAAATGTAGGGTAGATTCCTTTTGAATATTATAATCAGATAAT-GTACGGCC 2230
Query 94852 ATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTT 94911
||| ||||| |||||||| |||| || | || || |||||||| |||||||| |||||
Sbjct 2231 ATCTTCCAGTTGTTTTCCAGCAAAAATAAGCCTCTGTTGATCTGGGGGAATACCCTCTTT 2290
Query 94912 GTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGAT 94971
||| | || |||||||| || ||| |||||| | | || || || | |||||
Sbjct 2291 GTCTTGGATCTTTGCCTTCACATTTTCGATAGTGTCGGACGGCTCTACCTCTAAAGTGAT 2350
Query 94972 GGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007
||||||||| |||||||| || ||||||||||||||
Sbjct 2351 GGTTTTTCCTGTAAGAGTCTTAACAAAGATCTGCAT 2386
Score = 125 bits (138), Expect = 6e-24
Identities = 153/209 (73%), Gaps = 0/209 (0%)
Strand=Plus/Plus
Query 94799 ACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGAATCCTCC 94858
|| || |||||||||||||| ||||| | |||||| || || |||| | ||||||
Sbjct 582 ACTAAATGCAAAGTAGATTCTTTTTGGATGTTATAGTCCGACAGAGTGCGGCCATCCTCT 641
Query 94859 AGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATAA 94918
| |||||| || ||||||| | | || || ||||| ||||| || || ||||| |
Sbjct 642 AACTGTTTACCAGCAAAGATGAGACGCTGTTGGTCTGGGGGAATGCCCTCCTTGTCTTGG 701
Query 94919 ATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTTTT 94978
|| || ||||| || ||| |||||| | | || || || | |||||||| ||
Sbjct 702 ATCTTAGCCTTAACATTTTCGATAGTGTCGGATGGCTCCACCTCCAAAGTGATGGTCTTC 761
Query 94979 CCAGTAAGAGTTTTCACAAAGATCTGCAT 95007
||||||||||| || ||||||||||||||
Sbjct 762 CCAGTAAGAGTCTTAACAAAGATCTGCAT 790
Score = 118 bits (130), Expect = 9e-22
Identities = 155/215 (72%), Gaps = 0/215 (0%)
Strand=Plus/Plus
Query 94793 CGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGAA 94852
||||| |||||||| | ||||||||| ||||| | ||||| || | ||||
Sbjct 2400 CGCAATACCAAGTGAAGAGTAGATTCTTTTTGAATATTATAGTCAGAAAGAGTGCGTCCG 2459
Query 94853 TCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTG 94912
|| |||| || ||||| | || || || | ||| |||||||||||||| ||||| |||
Sbjct 2460 TCTTCCAATTGCTTTCCAGCGAAAATCAAACGTTGTTGATCTGGAGGAATGCCTTCCTTG 2519
Query 94913 TCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATG 94972
|| | |||||| || || || | | ||| || | | || || || | || |||
Sbjct 2520 TCTTGAATTTTGGCTTTTACATTTTCAATAGTATCGGAAGGTTCAACTTCCAAAGTAATG 2579
Query 94973 GTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007
||||| || ||||| ||||||||||||||||||||
Sbjct 2580 GTTTTACCCGTAAGTGTTTTCACAAAGATCTGCAT 2614
Score = 113 bits (124), Expect = 4e-20
Identities = 161/227 (71%), Gaps = 0/227 (0%)
Strand=Plus/Plus
Query 94781 CCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTC 94840
||||||| || || || |||||||||||||| || || || || | ||||| ||
Sbjct 792 CCTCCTCGTAAACGTAATACCAAGTGCAAAGTGGACTCTTTCTGAATATTATAGTCAGAG 851
Query 94841 ATAGTGTTGGAATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGA 94900
| ||| | |||||||||||| || || | || || | | ||| |||||||| |||
Sbjct 852 AGAGTACGGCCATCCTCCAGCTGCTTGCCAGCGAAAATGAGACGTTGTTGATCTGGGGGA 911
Query 94901 ATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACG 94960
||||| |||||||| | || || || || || | | |||||| | | | || ||
Sbjct 912 ATACCCTCTTTGTCTTGGATCTTAGCTTTAACATTTTCAATAGTGTCTGAGGGTTCAACT 971
Query 94961 TCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007
|| | ||||| ||||| || || || || || ||||||||||||||
Sbjct 972 TCTAATGTGATAGTTTTCCCTGTCAGTGTCTTTACAAAGATCTGCAT 1018
Score = 107 bits (118), Expect = 2e-18
Identities = 170/242 (70%), Gaps = 4/242 (2%)
Strand=Plus/Plus
Query 94768 AAAATTTTACACTCCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCAC 94827
|||| | | || || ||||| || || | || ||||||||||||||||| ||||| |
Sbjct 1919 AAAAATCTGCATACCACCTCTTAAACGAAGTACTAAGTGCAAAGTAGATTCTTTTTGGAT 1978
Query 94828 GTTATAATCGCTCATAGTGTTGGA--ATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTT 94885
||| || || || |||| || ||| || | || || || |||| || | | |
Sbjct 1979 GTTGTAGTCAGACA--GTGTACGACCATCTTCTAATTGCTTGCCCGCAAAAATAAGACGT 2036
Query 94886 TGCTGATCTGGAGGAATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTG 94945
|| ||||| |||||||| ||||||||||| | ||||| || || || | | |||
Sbjct 2037 TGTTGATCCGGAGGAATGCCTTCTTTGTCTTGGATTTTAGCTTTCACATTTTCAATTGTG 2096
Query 94946 TCAGCGTGGTCGACGTCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGC 95005
|||| || || || | || || ||||||||||| || ||||| |||||||| |||
Sbjct 2097 TCAGAAGCTTCAACTTCTAAAGTAATTGTTTTTCCAGTGAGTGTTTTAACAAAGATTTGC 2156
Query 95006 AT 95007
||
Sbjct 2157 AT 2158
Score = 86.0 bits (94), Expect = 6e-12
Identities = 155/227 (68%), Gaps = 0/227 (0%)
Strand=Plus/Plus
Query 94781 CCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTC 94840
||||||| | || | |||||||| | || || || || || | || || || |
Sbjct 1020 CCTCCTCGGAGACGGAGTACCAAGTGAAGGGTCGACTCTTTCTGGATATTGTAGTCAGAC 1079
Query 94841 ATAGTGTTGGAATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGA 94900
| ||| | ||| ||||| ||||| || | ||||| | | ||| ||||||||||||
Sbjct 1080 AGGGTGCGGCCATCTTCCAGTTGTTTACCAGCGAAGATAAGACGTTGTTGATCTGGAGGA 1139
Query 94901 ATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACG 94960
|| ||||| || || | ||| || || || || | | ||||| | | || ||
Sbjct 1140 ATTCCTTCCTTATCTTGAATCTTAGCTTTAACATTTTCAATGGTGTCTGATGGCTCAACT 1199
Query 94961 TCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007
|| | || || |||||||||||||| ||||| ||||| || |||||
Sbjct 1200 TCCAAAGTTATTGTTTTTCCAGTAAGTGTTTTGACAAATATTTGCAT 1246
>seq27511
Length=800
Score = 134 bits (148), Expect = 1e-26
Identities = 176/242 (73%), Gaps = 4/242 (2%)
Strand=Plus/Minus
Query 94768 AAAATTTTACACTCCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCAC 94827
|||| ||| || ||| || || | |||| |||||||||||||||||||||||| || |
Sbjct 456 AAAAATTTGCATTCCACCCCTAAGGCGCAGCACCAAGTGCAAAGTAGATTCCTTCTGAAT 397
Query 94828 GTTATAATCGCTCATAGTGTTGGA--ATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTT 94885
|||||||| | | | ||| | ||| |||||||||||||| |||| || | ||
Sbjct 396 ATTATAATC--TGACAATGTACGTCCATCTTCCAGCTGTTTTCCTGCAAAAATAAGCCTC 339
Query 94886 TGCTGATCTGGAGGAATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTG 94945
|| || || |||||||| ||||||||||| | ||| |||||||| || | | ||
Sbjct 338 TGTTGGTCAGGAGGAATGCCTTCTTTGTCTTGAATCTTTGCCTTAACATTTTCTATTGTA 279
Query 94946 TCAGCGTGGTCGACGTCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGC 95005
|||| || || || | ||||| ||||| ||||| || || || ||||| || |||
Sbjct 278 TCAGAAGCTTCCACTTCCAAAGTGATAGTTTTGCCAGTCAGTGTCTTTACAAAAATTTGC 219
Query 95006 AT 95007
||
Sbjct 218 AT 217
Score = 122 bits (134), Expect = 8e-23
Identities = 178/247 (72%), Gaps = 6/247 (2%)
Strand=Plus/Minus
Query 94765 TTTA-AAAT-TTTACACTCCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTT 94822
|||| |||| ||| || ||| ||||||| |||| |||| ||||||||| ||||||||
Sbjct 689 TTTACAAATATTTGCATTCCACCTCTCAGCCGCAGTACCAGGTGCAAAGTTGATTCCTTC 630
Query 94823 TGCACGTTATAATCGCTCATAGTGTTGGA--ATCCTCCAGCTGTTTTCCGCCAAAGATTA 94880
|| | || || || ||||||| | ||| || ||||| ||||| |||| || |
Sbjct 629 TGAATATTGTAGTCAG--ATAGTGTGCGTCCATCTTCAAGCTGCTTTCCAGCAAAAATAA 572
Query 94881 ATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGA 94940
||||||||||||||| |||||||| ||||| || | |||||| ||||| || | |
Sbjct 571 GTCTTTGCTGATCTGGGGGAATACCCTCTTTATCCTGAATTTTCGCCTTAACATTTTCAA 512
Query 94941 CAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGA 95000
|| |||| || || || | ||||| || || ||||| || || || ||||| |
Sbjct 511 TTGTATCAGAAGCTTCCACTTCCAAAGTGATAGTCTTGCCAGTCAGTGTCTTTACAAAAA 452
Query 95001 TCTGCAT 95007
| |||||
Sbjct 451 TTTGCAT 445
Score = 113 bits (124), Expect = 4e-20
Identities = 164/230 (71%), Gaps = 4/230 (2%)
Strand=Plus/Minus
Query 94768 AAAATTTTACACTCCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCAC 94827
|||| ||| || ||| ||||||| || | || | ||||||||||||||| || || |
Sbjct 228 AAAAATTTGCATTCCACCTCTCAGCCGTAGTACTAGGTGCAAAGTAGATTCTTTCTGAAT 169
Query 94828 GTTATAATCGCTCATAGTGTTGGA--ATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTT 94885
||| ||||| ||||||| | ||| || ||||| ||||| |||| || | ||||
Sbjct 168 GTTGTAATCAG--ATAGTGTGCGTCCATCTTCAAGCTGCTTTCCAGCAAAAATAAGTCTT 111
Query 94886 TGCTGATCTGGAGGAATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTG 94945
||||||||||| ||||| || ||||| || | ||||||||| || || | | ||
Sbjct 110 TGCTGATCTGGGGGAATTCCCTCTTTATCCTGAATTTTTGCTTTAACATTTTCAATTGTA 51
Query 94946 TCAGCGTGGTCGACGTCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCAC 94995
|||| | || || || | ||||| || || ||||| || || || ||
Sbjct 50 TCAGAAGGCTCAACTTCCAAAGTGATAGTCTTGCCAGTCAGTGTCTTTAC 1
>seq27512
Length=242
Score = 120 bits (132), Expect = 3e-22
Identities = 165/229 (72%), Gaps = 4/229 (2%)
Strand=Plus/Plus
Query 94781 CCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTC 94840
|| ||||||| || | || || || ||||||||||| || || | || || || |
Sbjct 1 CCACCTCTCAGACGAAGTACTAAATGTAAAGTAGATTCTTTCTGAATATTGTAGTC--TG 58
Query 94841 ATAGTGTTGGA--ATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAG 94898
||||||| | |||||| ||||| ||||| |||| || | ||||| || |||||||
Sbjct 59 ATAGTGTACGTCCATCCTCAAGCTGCTTTCCAGCAAAAATAAGCCTTTGTTGGTCTGGAG 118
Query 94899 GAATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGA 94958
|||| ||||| || || | |||||||||||| || ||| ||||||| | | || |
Sbjct 119 GAATGCCTTCCTTATCTTGAATTTTTGCCTTAACATTTTCGATTGTGTCAGAGGGCTCAA 178
Query 94959 CGTCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007
| || | ||||| || || ||||| || || || ||||| || |||||
Sbjct 179 CTTCCAGTGTGATAGTCTTGCCAGTCAGTGTCTTTACAAATATTTGCAT 227
>seq41046
Length=7774
Score = 84.2 bits (92), Expect = 2e-11
Identities = 156/228 (68%), Gaps = 1/228 (0%)
Strand=Plus/Plus
Query 94781 CCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTC 94840
||||| | | ||| | ||| | ||||| || ||||||||||| | ||| || || |
Sbjct 7155 CCTCCGCGAAGTCGAAGCACAAGATGCAATGTGGATTCCTTTTGAATGTTGTAGTCAGAC 7214
Query 94841 ATAGTGTTGGAATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGA 94900
| || ||| || || ||||| || ||||||| || | |||||| ||||| |||
Sbjct 7215 AATGTACGTCCATCTTCTAGTTGTTTACCAGCAAAGATCAAACGTTGCTGGTCTGGTGGA 7274
Query 94901 ATACCTTCTTTGTCATAAATTTTTGC-CTTGACGGCGCCGACAGTGTCAGCGTGGTCGAC 94959
|||||||| || || | ||||| || || || | | ||| |||| | || ||
Sbjct 7275 ATACCTTCCTTATCTTGGATTTTAGCTTTTAACATTTTCTATAGTATCAGAGGCCTCCAC 7334
Query 94960 GTCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007
|| | || |||||||| || ||||| || || || || || |||||
Sbjct 7335 CTCGAGGGTAATGGTTTTACCCGTAAGGGTCTTGACGAAAATTTGCAT 7382
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 446738526617880
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