Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Heliconius_20pachinus_20[genbank_20GCA_5F900068735.1_202017-04-26] 277,083 sequences; 279,264,790 total letters Query= NC_006658.1 Length=30655 Score E Sequences producing significant alignments: (Bits) Value seq1231 114 3e-21 >seq1231 Length=2775 Score = 114 bits (126), Expect = 3e-21 Identities = 348/527 (66%), Gaps = 28/527 (5%) Strand=Plus/Minus Query 4474 AAAAATAATTATGTTATTCACTATAAAAA---TTTGAAACAATGTTTAGATTTA-GGTTT 4529 ||||| || |||||||| || |||| ||| |||| |||||| ||| || ||||| Sbjct 1030 AAAAAAAAATATGTTATACATTATAGAAACCTTTTG---CAATGTG-AGAAATATGGTTT 975 Query 4530 ---AGTTCTTAAGAAAATACACCTAGTCTTGAAATTTGAGCAATCAGACTGGCTCAAATC 4586 ||| | | ||| | || ||| || ||||| ||||| | ||| | ||| Sbjct 974 GCGAGTAC---AAAAAGTTCATAGAGTATTAAAATTCAAGCAAAAACCTTGGTTAAAAAA 918 Query 4587 ATATATCGATAAAAATACCGCATGCCGAAAACTAGCTAAGAATGAGTTCGaaaaaaaCTT 4646 |||||| || ||| || || |||| |||| | || || |||||| | || Sbjct 917 ATATATTGAATTAAACACTCAATTACGAACTTTAGCAACATCCGACTTTGAAAAAGATTT 858 Query 4647 TTATAAATTAATGAATAATGCGGTTTTTGGAAAGACGATGGAGAATGTACGAAAATATAA 4706 |||||| | ||||||||| | || ||||||||||| ||||| ||| | |||||| | | Sbjct 857 TTATAAGCTGATGAATAATTCTGTATTTGGAAAGACAATGGAAAATAT-CGAAAAAAGAG 799 Query 4707 -AGATATATATTTAAGAACAAAGTGGCAAAGTCA-------ATACAATGTATCG-GATTT 4757 | | | | ||| |||| | ||| ||| ||| || || || | | || | Sbjct 798 TAAACGTGAAATTATTAACACATTGGGAAAATCATGGAAAAATCAAAGGTGTTGAGAGTC 739 Query 4758 AGTATG-TAGACCAAACTTCCACAGCCTTACAATTTTTGATGAGGATATGGTTATAGTTG 4816 || | | || | |||||||| ||| | |||||| ||| || |||| ||| Sbjct 738 TCATTGCTCGCCCCGAATTCCACAGTCTTTCCATTTTTTCTGAAAATTTGGTCGCAGTCC 679 Query 4817 AACTTAAAAAAGCTAGAGTTTGCTTCAACAAGCCGATCTATGTAGGGTTTAGTATATTAG 4876 ||||| ||| ||| | | | | || ||||| || ||| |||| ||||| ||||||| Sbjct 678 AACTTCGCAAAACTAAATTGTTTTATAATAAGCCCATATATTTAGGTTTTAGCATATTAG 619 Query 4877 ATTTATCTAAAATTTATATTTATGACTTTCATTACAATTATGTTATGCAAAATTATGTAA 4936 | |||| || | || || ||||||||||| || | || ||| ||||| | | | Sbjct 618 AGATATCCAAGACTTTAATGTATGACTTTCACTATCAGTA---CATGAAAAATAAATTTA 562 Query 4937 ATACCTCAAAATTATTGTACACTGACACAGATAGTCTAATTTACCAA 4983 | | |||||| || || ||||| || |||||||| || |||||| Sbjct 561 CCAACATAAAATTGTTATATACTGATACTGATAGTCTGATATACCAA 515 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 97652028891982