Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Heliconius_20pachinus_20[genbank_20GCA_5F900068735.1_202017-04-26] 277,083 sequences; 279,264,790 total letters Query= NC_006966.1 Length=166259 Score E Sequences producing significant alignments: (Bits) Value seq7533 111 2e-19 seq141872 95.1 1e-14 seq56708 86.0 7e-12 >seq7533 Length=2710 Score = 111 bits (122), Expect = 2e-19 Identities = 160/219 (73%), Gaps = 5/219 (2%) Strand=Plus/Minus Query 21477 ATGCAAAATCACAATGCAAACCTTCATCCCTACTTATTAATTCATTAGAAAATGTTAAAC 21536 || |||||| || | || |||| |||||||| || | ||||||| || || || | Sbjct 1879 ATACAAAATTACGAAACATACCT-CATCCCTAGAAATAAGTTCATTACTGAAAGTCAATC 1821 Query 21537 CGGGCATTAATCCTCTCTTTTTTAACCAAAATATTGACGCAAATGCT-CCTGAAAAGAAA 21595 ||||||| | |||| ||||| |||||||||||||| ||||| ||| ||||| || || Sbjct 1820 CGGGCATCAGACCTCGTTTTTTCAACCAAAATATTGAAGCAAA-GCTGCCTGAGAAAAAT 1762 Query 21596 ATGCCCTCAACGGCAGCAAATGCAACTAATCGTTCACCGTATGTAGAT-TCTTTATCCAA 21654 || |||||||| || ||||| |||| || ||||| || |||||| | |||| | | Sbjct 1761 ATTCCCTCAACTGCTGCAAAAGCAATTATACGTTCTCCAAATGTAGCTGTCTTGCTGC-C 1703 Query 21655 TATCCATTTTTCTGCCCATTTTGCCTTTTCTTTAATACA 21693 ||||| | | ||||| | |||||| | |||| ||| Sbjct 1702 GATCCACTGTAACGCCCAGTCTGCCTTCTTCTTAACACA 1664 >seq141872 Length=750 Score = 95.1 bits (104), Expect = 1e-14 Identities = 107/141 (76%), Gaps = 2/141 (1%) Strand=Plus/Minus Query 21125 ATTTAAAAATCAGCATCTAATGAGAAAACATTATCTTCtttttttGACATAATTCCCATT 21184 |||||||| ||||||||||| | ||||||||| || || | ||| | |||| Sbjct 749 ATTTAAAATTCAGCATCTAAAGTGAAAACATTGTCCATAGGTTGCGCCATCACTCCCCAC 690 Query 21185 TTTTGATAATCACTAACTCTTTTTTCGAAAAAATTTGTCTTTCCTTCCAATGATAT-AGA 21243 || || || || | |||| | || || || |||||||| || ||||||||||| || ||| Sbjct 689 TTCTGGTATTCTCCAACTTTCTTCTCAAAGAAATTTGTTTTGCCTTCCAATGAGATGAGA 630 Query 21244 TTCCATAAAATCAAATGGATT 21264 || ||||||||| |||||||| Sbjct 629 TT-CATAAAATCGAATGGATT 610 >seq56708 Length=5257 Score = 86.0 bits (94), Expect = 7e-12 Identities = 216/323 (67%), Gaps = 8/323 (2%) Strand=Plus/Plus Query 131860 TCCTATGACTCCTGTTAAACCTATGTTGGCTGATGTATGCGAATCTCTAGAAAAAGCAAT 131919 || ||||||||| || ||| ||||| || || | ||| | || | |||| || || Sbjct 2028 TCTTATGACTCCAGTATTACCGATGTTAGCAGAAGCTTGCAAGTCAGTTGAAATGGCTAT 2087 Query 131920 AGATAAATATAAAGATGGAATGTATTCAGAGGTAAAATATGATGGGGAGCGTGTACAAAT 131979 | |||| | | |||| |||| ||| ||| ||||||||||||| || || || ||| | Sbjct 2088 GAAAAAATGTCCAAATGGCATGTTTTCTGAGATAAAATATGATGGAGAACGGGTTCAAGT 2147 Query 131980 TCATAAAAAAGATAATGTATACAATTATTTTAGTAGAAATTTAAAACCTGTTCTTACTCA 132039 |||||||| | |||| | ||| |||||| | |||||||| || | |||| Sbjct 2148 CCATAAAAAGGGAAATGAGTTCAAATATTTTTCCCGTGCCTTAAAACCAGTAATGGCTCA 2207 Query 132040 TAAAATTGATGGATTTGATAAACTGTTGA-CTGATGCATTTCCCACAGCAAAAAACTTCA 132098 ||| || | |||| | | | | || | | | |||||||| | || | | | || | Sbjct 2208 CAAAGTT-AGTCATTTTAAAGATTATTTACCCAAAGCATTTCCTAAAGGAGATGATTTGA 2266 Query 132099 TTTTAGATGCGGAATTAATAATGATAGAT-ACAAAA--TCAAATTCATTTTTACCATTTG 132155 | || ||||| ||| || | ||| | ||| ||| | ||| || || || || | Sbjct 2267 TCTTGGATGCTGAAGTACTTATGGTTGATGTCAATACTGGAAAACCA---TTGCCTTTCG 2323 Query 132156 GTTCATTAGGTATACATaaaaaa 132178 || |||||||||| || ||| || Sbjct 2324 GTACATTAGGTATTCACAAACAA 2346 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 530058541632920