Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Heliconius_20pachinus_20[genbank_20GCA_5F900068735.1_202017-04-26] 277,083 sequences; 279,264,790 total letters Query= NC_006998.1 Length=194711 Score E Sequences producing significant alignments: (Bits) Value seq13366 531 6e-146 seq7533 96.9 4e-15 >seq13366 Length=6323 Score = 531 bits (588), Expect = 6e-146 Identities = 1106/1624 (68%), Gaps = 45/1624 (3%) Strand=Plus/Plus Query 61975 TTATTTTATCCTTGTCCAATGTGAATTGAATGGGAGCGGATGCGGGTTTCGTACGTAGAT 62034 |||||||| | ||||| | || || ||||| | | | ||| ||||| || |||| | Sbjct 494 TTATTTTACCTTTGTCTACAGTAAACTGAATAGCATTTGCTGCTGGTTTTGTGCGTAAGT 553 Query 62035 AGTACATTCCCGTTTTTAGACCGAGACTCCATCCGTAAAAATGCATACTCGTTAGTTTGG 62094 |||||||||| ||||||| || | |||| ||| ||||| || ||| ||||| Sbjct 554 AGTACATTCCTGTTTTTAATCCCATTTTCCAAGCGTGGAAATGAATCGACGTAAGTTTTC 613 Query 62095 AATAACTCGGATCTGCTATATGGATATTCATAGATTGACTTTGATCGATGAAGGCTCCCC 62154 ||| | || | || | ||| || || | |||||||||||| || || || ||||| | Sbjct 614 CATAGTTAGGTTTAGCAACATGTATGTTAAAAGATTGACTTTGGTCTATAAAAGCTCCTC 673 Query 62155 TGTCTGCAGCCATTTTTATGATCGTCTTTTGTGGAATTTCCCAAATAGTTTTATA-AACT 62213 | || || ||||| | |||| || || ||| ||| ||||| | ||||| || || | Sbjct 674 TATCAGCTGCCATCTGTATGGATGTTTTCAGTGAAATCTCCCATACGGTTTTGTACAAAT 733 Query 62214 CGCTTAATATCTTCTGGAAGGTTTGTA--TTCT-GAATGGATCCACCATCTGCCATAATC 62270 | |||| | |||| |||| ||| | |||| | || |||||| | ||||| Sbjct 734 CTCTTATT-TCTTTAGGAATTTTTTCAATTTCTTGTATAGATCCATTGTTGTATATAATA 792 Query 62271 CTATTCTTGATCTCATCATTCCATAATTTTCTCTCGGTTAAAACTCTAAGGAGATGCGGA 62330 ||| || || || |||| ||| || | | || ||| | | || ||||| | Sbjct 793 AGATTTTTCATATCTTCATCCCACAAATCAGCCCGAGTCAAATCAGTCAGAAGATGATGG 852 Query 62331 TTAACTACTTGAAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGT 62390 || ||||| ||||||||||||| || ||||| | ||||||||| ||| | ||| Sbjct 853 TTCACTACAGGAAATTCTCCAGATAAGACTCTTCTTTGGTAAATATTTGATGTAAAGGGT 912 Query 62391 TCCACCGACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACC 62450 || | || ||| | || || | |||||| ||||| || |||||||||||||| || | | Sbjct 913 TCAAAAGATTCAGTGTTGCCAAGAATTTGTGCAGTAGAGGCAGTCGGCATAGGAGCTATC 972 Query 62451 AATAAACTATTTCTAAGACCGTATGTTCTG--ATTTTATCTTTTAGAGGTTCCCAATTCC 62508 |||| | ||| | | ||| ||||| || || || ||||| || |||| | || Sbjct 973 AATAGAGAATTGCGCAAACC--ATGTTTTGCTATCTTTTCTTTAAGGACAGCCCAGTCCC 1030 Query 62509 AAAGATCCGACGGTACAACNNNNNNNNNNNNNNNTTGTAGAATACCGTTACTGGC-GTAC 62567 |||| || | || || || ||||| | || || | || Sbjct 1031 AAAGGTCTGTAGGAGTTTTGTCCCACATATCATACTGGAGGATACCTTGGCTTGCTGGAC 1090 Query 62568 GATCCTACATATGTATCGTATGGTCCTTCCTTCTCAGCTAGTTCACAACTCGCCTCTAAT 62627 ||| |||||| ||||| ||||| || ||||||| ||||||||| || |||||| Sbjct 1091 TC-CCTTGATATGTGCTGTATGCACCTTCTTTTTCAGCTAATTCACAACTAGCTTCTAAT 1149 Query 62628 GCACCGTAATAAATGGTTTCGAAGATCTTCTTATTTAGATCTTGTGCTTCCAGGCTATCA 62687 ||||| |||||||| ||||| || || | | ||| ||| | ||||| | || || Sbjct 1150 GCACCATAATAAATTGTTTCAAATATTTGTTGATTGAGAAGTATTGCTTTCTCACTTTCG 1209 Query 62688 AATGGATAATTTAAGAGA-ATAAACGCGTCCGCTAATCCTTGAACACCAATACCGATAGG 62746 | | ||| | | | | | |||||| || || | || |||||||||||||| ||||| Sbjct 1210 TAAG-ATATTCTCATCAACACAAACGCATCTGCCATGCCCTGAACACCAATACCAATAGG 1268 Query 62747 TCTATGTCTCTTATTAGAGATTTCAGCTTCTGGAATAGGATAATAATTAATATCTATAAT 62806 |||||||||| |||| || ||| || || || | ||||||| |||||| ||| |||| Sbjct 1269 TCTATGTCTCATATTTGAAGTTTTTGCCTCAGGGACAGGATAAAAATTAACATCAATAAC 1328 Query 62807 TTTATTGAGATTTC---TGACAATTACTTTGACCACATCCTTCAGTTTGAGAAAATCAAA 62863 ||| || | |||| | ||||| ||||| | || || | ||| ||||| ||| Sbjct 1329 TTTGTTTAAATTTTGAGTTACAAT--CTTTGTG-ATTTCTTTTAATTTTTTAAAATTAAA 1385 Query 62864 TCGCCCATCTATTACAAACATGTTCAAGGCAACAGATGCCAGATTACAAACGGCTACCTC 62923 || || | ||||||||||| | || | || || || || || || || || || Sbjct 1386 TCTGTTATTTTCAACAAACATGTTAAGTGCTATGGAAGCAAGGTTGCACACTGCCACTTC 1445 Query 62924 ATTAGCATCCGCA---TATTGTATTATCTCAGTGCAAAGATTACTACACTTGATAGTTCC 62980 || | || | | ||||| | | ||||||||||||||| ||||| || ||||| || Sbjct 1446 AT---CTTCTGAAGTGTATTGCACAACCTCAGTGCAAAGATTGCTACATTTAATAGTGCC 1502 Query 62981 TAAATTTTGTTGATTACTCTTTTTGTTACACGCATCCTTATAAAGAATGAATGGAGTACC 63040 | ||||| ||||||||||||| ||||||| ||||||||||| | ||| |||| ||||| Sbjct 1503 AAGATTTTTTTGATTACTCTTTCTGTTACAAGCATCCTTATACAACATGTATGGTGTACC 1562 Query 63041 AGTTTCAATCTGAGATTCTATAATCGCTTTCCAGACGACTCGAGCCTTTATTATAGATTT 63100 ||| || | || | ||||||||| | ||||| | || |||| | | | | ||| Sbjct 1563 AGTCTCCACTTGGGCTTCTATAATTGACTTCCATAACTCTTGAGCTCTGACTT--GTTTT 1620 Query 63101 GTATCTCCTTTCTCTT--TCGTATAGTGTATACAATCGTTCGAACTCGTCTCCCCAAACA 63158 || || ||| |||| || ||| | ||| | | ||| || || ||||| || || Sbjct 1621 ATAAATCGTTTTTCTTCTTCATATTTGGCATATAGTTCTTCAAATTCCTCTCCA-AAGCA 1679 Query 63159 TTGTCCAAT-CCAGGACATTCATCCGGACACATCAACGACCACTCTCCGTCATCCTTC-- 63215 | | | |||||||| |||| |||||||| | ||| || |||||||| Sbjct 1680 GTCAGCGAGGCCAGGACAATCATGAGGACACATGAGACTCCAAACT---TCATCCTTTTC 1736 Query 63216 -ACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATG 63274 |||| ||||||||| ||||| || ||||| | ||| ||| || ||||| | ||| Sbjct 1737 TACTCTTTTCATAAACAGATCTGGTATCCATAAAGCATAAAACAGTTCTCTAGCTCTCAT 1796 Query 63275 TTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGG 63334 ||| || || ||||| ||||| || | ||| | ||| | | ||||| | |||||| || Sbjct 1797 TTCTTCCTTACCTGTGTTCTTCTTTAAATCCAAGAATTCAAATATATCCGCATGCCAAGG 1856 Query 63335 TTCCAAGTATATGGCCATAACTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGC 63394 || || || || || | | || || ||||||||||| || ||||||| ||||| || Sbjct 1857 CTCTAAATAAATTGCAAATGCGCCGGGACGTTTGTTTCCACCTTGATCTACATATCTGGC 1916 Query 63395 GGTGTTATTATAAACTCTCAACATTGGAATAATACCGTTTGATATACCATTGGTACCGGA 63454 || || ||||| |||||||||||||| | | ||| ||||| | ||||| || || | Sbjct 1917 AGTATTGTTATACACTCTCAACATTGGCACTAGACCATTTGAGACCCCATTAGTGCCAGC 1976 Query 63455 GATATAGCTTCCACTG-GCACGAAT---ATTACTAATTGATAGACCTATTCCCCCTGCCA 63510 || || || ||| || | || || || || || |||||| || || || Sbjct 1977 TATGTAAGAACC-CTGAGCTCTGATGCAATGTGTA--TG-TAAACCTATGCCACCAGCAG 2032 Query 63511 TTTTAGAGATTAATGCGCATCGTTTTAACGTGTCATAGATACCCTCTATGCTATCATCGA 63570 |||||| |||||||| ||| ||||||| || ||| | ||||| || |||||||| || Sbjct 2033 ATTTAGAAATTAATGCACATTGTTTTAAAGTATCAAAAATACCTTCAATGCTATCGTCTT 2092 Query 63571 TCAT 63574 |||| Sbjct 2093 TCAT 2096 Score = 102 bits (112), Expect = 1e-16 Identities = 89/111 (80%), Gaps = 0/111 (0%) Strand=Plus/Plus Query 63755 CTTGTTGTTTATTTTCAACAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTA 63814 ||| |||||||| |||||||| || ||| ||||||||||||| ||||||||||||||||| Sbjct 2609 CTTATTGTTTATCTTCAACAAATATGATCTTTCCAAAGTTTTGAAACCAAAATAGTTGTA 2668 Query 63815 TGAAAAGTCTCGTTCGTAAATAATAACCGAGTTGAGTTTATCCTTATATTT 63865 | ||| |||| || |||| ||| | |||| | ||| ||||| | ||| Sbjct 2669 TTTAAAATCTCTATCATAAACAATGGCAGAGTCTAATTTGTCCTTGTTTTT 2719 Score = 100 bits (110), Expect = 4e-16 Identities = 106/140 (76%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 63966 TTTTTTGTTTCCTTGTGTAGATTTGATACGGCTATTCTGGCGGCTAGAATGGCATAATCC 64025 || || || || || |||| ||| |||| ||||||||||| || | ||||||||||||| Sbjct 3380 TTCTTGGTGTCTTTATGTAAATTGGATATTGCTATTCTGGCAGCCAAAATGGCATAATCC 3439 Query 64026 GGATGTTGTGTAGTACAAGTGGCTGCTATTTCGGCTGCCAGAGTGTCCAATTCTACCGTT 64085 ||||| | ||| || ||| ||||||||||| || || ||| | || | || | ||| Sbjct 3440 GGATGATCTGTGGTCTTAGTAGCTGCTATTTCTGCAGCTAGATTATCAAGCTCAGCAGTT 3499 Query 64086 GTTACTCCATTATATATTCC 64105 ||||| ||| |||||| || Sbjct 3500 GTTACACCAGAATATATGCC 3519 >seq7533 Length=2710 Score = 96.9 bits (106), Expect = 4e-15 Identities = 86/108 (80%), Gaps = 0/108 (0%) Strand=Plus/Minus Query 33790 TTAGATATATCTACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATACATGTTC 33849 ||||||| ||||||||||| | |||||||| ||||| || || ||||||||||| | | Sbjct 680 TTAGATAAGTCTACTTCTTCTGCAGTCCAAAACGATGCTTCAGCTTTTTTATACATCTGC 621 Query 33850 CAGATGTCATAATATTGGATTGGGAAAATAACAAATCTATTTGGATTT 33897 || || || ||||||||||||||| |||||||| | | |||||| Sbjct 620 CATATATCTGGATATTGGATTGGGAATATAACAAAACGTCTAGGATTT 573 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 620789599012280