Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Heliconius_20pachinus_20[genbank_20GCA_5F900068735.1_202017-04-26] 277,083 sequences; 279,264,790 total letters Query= NC_007145.2 Length=37639 Score E Sequences producing significant alignments: (Bits) Value seq253728 145 2e-30 seq125599 125 2e-24 seq56468 122 2e-23 seq268213 102 2e-17 seq213337 86.0 2e-12 >seq253728 Length=404 Score = 145 bits (160), Expect = 2e-30 Identities = 237/336 (71%), Gaps = 4/336 (1%) Strand=Plus/Plus Query 3408 GCGGCGCGACGCTGTACTTCCTGGGCACGAACGCGCGCACCGCGCAGTCGTACCACGGCA 3467 ||||| ||| |||| ||||||| ||||||||| |||||||||||| | ||||||| Sbjct 63 GCGGC-CGA-GCTGCACTTCCTCGGCACGAACTTTCGCACCGCGCAGGGGCGGCACGGCA 120 Query 3468 ACTTCTACTTCGACGAATACTTTTGGGTTCCGAAGTTCCGCGAGCTGAACAAGGTCGCCT 3527 | |||||||||||||| | ||| ||||||| | ||| ||||||||||||||||||| Sbjct 121 ATTTCTACTTCGACGAGTTCTTCTGGGTTCACAGCTTCGAGGAGCTGAACAAGGTCGCCT 180 Query 3528 CCGGCATGGCGATGCACAAGCGCTGGCGCAAGACGTACTTCAGCACGCCGTCCAGCGTCA 3587 | || ||||||| ||||||| ||||| || || ||||| ||||| || | ||| Sbjct 181 CGGGGATGGCGACGCACAAGAAGTGGCGAAAAACCTACTTTTCGACGCCATCGACCGTGC 240 Query 3588 CGCACGAGGCGTACGCGTTCTGGAGCGGCGCGC-ACGCGAACCGCGGCCGCGCCGCGGGC 3646 |||| || || | | ||||| ||||| || ||| ||||| |||| || Sbjct 241 TGCACCCCGCCTATCCATACTGGACCGGCGAGCGGCGC-AACCGGCGCCGAAAGAAGGAA 299 Query 3647 GAGCGCATCCAGATCGACACGAGCCACGAGGCGCTCGTGCGCGGCATGTTGTGCGAGGAC 3706 || ||| || || | ||| |||||| | ||||| | | |||| | | || ||| Sbjct 300 GATCGCGTCGAGCTGGACGTGAGCCATGCAGCGCTGGCGGACGGCGCGGTCGGCCCCGAC 359 Query 3707 GCGCAGTGGCGGCAGATCGTGACCGTGCTCGATGCG 3742 | ||||| || ||||||| | | | ||| ||| Sbjct 360 CGGATTTGGCGCCACATCGTGAACATCCGCGACGCG 395 >seq125599 Length=907 Score = 125 bits (138), Expect = 2e-24 Identities = 293/440 (67%), Gaps = 11/440 (3%) Strand=Plus/Minus Query 3423 ACTTCCTGGGCACGAACGCGCGCACCGCGCA--GTCGTACCACGGCAACTTCTACTTCGA 3480 |||| || || ||||| ||||| ||||| | ||| ||||||||||||||||| || Sbjct 820 ACTTTCTCGGAACGAATTTTCGCACTGCGCAAGGGCGT--CACGGCAACTTCTACTTTGA 763 Query 3481 CGAATACTTTTGGGTTCCGAAGTTCCGCGAGCTGAACAAGGTCGCCTCCGGCATGGCGAT 3540 ||||| ||||||||||| | ||| ||| ||||||| ||||| || || ||| Sbjct 762 CGAATTCTTTTGGGTTCATAGTTTCGAGGAGTTGAACAAAGTCGCGTCGGGTATGNNNNN 703 Query 3541 GCACAAGCGCTGGCGCAAGACGT-ACTTCAGCACGCCGTCCAGCGTCACGCACGAGGCGT 3599 ||||| |||||||| | || |||| | || | Sbjct 702 NNNNNNNNNNNNNNNNNNNNNNNNACTTCTCGACGCCGTCGACGATCGCGCATGCCGCCT 643 Query 3600 ACGCGTTCTGGAGCGGCGCGCACGCG-AACCGCGGCCGCGCCGCGGGCGAGCGCATCCAG 3658 | ||| ||||| || | || ||| ||||| | |||||| | ||||||| || || Sbjct 642 ATCCGTACTGGACGGGTGAGCG-GCGCAACCGGCGGCGCGCCAAAGCCGAGCGCGTCGAG 584 Query 3659 ATCGACACGAGCCACGAGGCGCTCGTGCGCGGCATGTTGTGCGAGGACGCGCAG-TGGCG 3717 ||||| |||||||| ||||| | |||| | | | ||| |||| ||||| Sbjct 583 ATCGATGTCAGCCACGACGCGCTGAAGGACGGCGCGCAGGGACCGGAT-CGCATCTGGCG 525 Query 3718 GCAGATCGTGACCGTGCTCGATGCGATGGCGGGCGGCTGCGACCTGTTCGACATCGACGA 3777 ||| ||||| || | |||||| ||| | || ||||||||||||||||||||||| Sbjct 524 GCATATCGTCACGATCACCGATGCCGAGGCCGCGGGTTGCGACCTGTTCGACATCGACGA 465 Query 3778 GCTGCGCCGCGAGTACAGCGCC-GAGGAATTCGCGAATCTGCTCATGTGCCAGTTCATCG 3836 ||||||| ||| || ||||| || || || || ||||| || ||| | ||| ||| Sbjct 464 GCTGCGCGACGAATA-TGCGCCAGACGAGTTTGCCAATCTATTCGACTGCGACTTCGTCG 406 Query 3837 ACGATTCGCTGTCGGTGTTC 3856 |||| ||||| | |||| Sbjct 405 ACGACAGCCTGTCCGCGTTC 386 >seq56468 Length=1893 Score = 122 bits (134), Expect = 2e-23 Identities = 246/352 (70%), Gaps = 21/352 (6%) Strand=Plus/Plus Query 740 CGATGTTTTCGGCCA-CGCAGCCGCAGCCGAAGTCTTCGACCACGTAGGCGTCGTTCGAC 798 ||||||| ||| || | ||||| ||| | ||||||||| || ||||||| ||| ||| Sbjct 123 CGATGTTCTCGATCAGCACAGCCTT-GCCCATGTCTTCGACGACATAGGCGTGGTT-GAC 180 Query 799 GAT-TCGTAGTTCTCGATGCGGTCGCGTTCCGGCACT-TCCTTCAGCGTGCGCCGGCGCG 856 | | |||||||||||||| ||||||| | ||| | |||| | | |||| || | Sbjct 181 GCTCTCGTAGTTCTCGATCTGGTCGCGCTT-GGCGTTGTCCTCGATCTTGCGACGCTCGG 239 Query 857 CGCCTTCCTGGTAGTAGATCGACAGATTTGACAGCTTCGTGACCATCAGCGCGCGCTTCG 916 ||| ||| | |||| |||||| || | ||| | |||| || | |||| ||| | Sbjct 240 TGCCGATCTGTTCATAGACCGACAGGTTGGCGAGCGTGGTGATCAGGATGGCGCTCTTTG 299 Query 917 GGAAGAACGGCACGCGCACGGCCGGCAGATTGCCGATGCGCTTCTGG-CTCACGATCAGA 975 |||| ||||||||| || || | || | |||||| ||||| | | || | ||| Sbjct 300 GGAACTTCGGCACGCGGACCGCGGTCAAACCGCCGAT---CTTCTTGTCGGAC-AGCAGG 355 Query 976 TCGGC---CGCGAGCCGCTCGGTCGGC-----GCCTGCGTCGCGTTGACGATCGGGAAAT 1027 || | ||| ||| ||||||| | | ||| || ||||||||||||| ||||| Sbjct 356 ACGTCACGCGCCAGCTGCTCGGTTGCCTTGTCGCC--CGATGCGTTGACGATCGAGAAAT 413 Query 1028 ACTTGTCGTGCAGCAGCTCGCGGCCGCAGATCACGACGAGGCCCGTGTCTTC 1079 ||||||||| | ||| |||||||| |||| |||| ||| | || || || Sbjct 414 ACTTGTCGTTGACGAGCGCGCGGCCGACGATCGCGACCAGGTCTGTATCCTC 465 Score = 80.6 bits (88), Expect = 6e-11 Identities = 110/145 (76%), Gaps = 14/145 (10%) Strand=Plus/Minus Query 1416 CGTGTCGTAGTCGGTCTTCTCGCAGCGGTAGCG-GTTGCTGTCGAG--CGCCGTCGGGTC 1472 ||||||| |||||||||||||||| |||||||| ||| | |||||| ||||| |||| Sbjct 1260 CGTGTCGAAGTCGGTCTTCTCGCAACGGTAGCGCGTTTC-GTCGAGATCGCCG--GGGT- 1205 Query 1473 GATCGGTTGGCGCGCGG-CCTTC---GTCGTGTCGGTGCGGCTCGCGATCGGGCCGGACA 1528 | || ||| ||||| ||||| |||||||||||||||||||||| || || Sbjct 1204 -AACG--AGGCTCGCGGTCCTTCACGCGGGTGTCGGTGCGGCTCGCGATCGTTCCCTTCA 1148 Query 1529 CGGACAGGCCGAGCTTTTCGCCTTC 1553 || | ||||| ||| || ||||| Sbjct 1147 CGCCAACGCCGACCTTGTCACCTTC 1123 >seq268213 Length=253 Score = 102 bits (112), Expect = 2e-17 Identities = 111/145 (77%), Gaps = 2/145 (1%) Strand=Plus/Plus Query 3425 TTCCTGGGCACGAACGCGCGCACCGCGCAGTCGTACCACGGCAACTTCTACTTCGACGAA 3484 ||||| || || || ||||||||||||||| || |||||||| ||||| |||||||| Sbjct 106 TTCCTCGGGACCAATGCGCGCACCGCGCAGGGCTATCACGGCAATTTCTATTTCGACGAG 165 Query 3485 TACTTTTGG-GTTCCGAAGTTCCGCGAGCTGAACAAGGTCGCCTCCGGCATGGCGATGCA 3543 | || ||| | || |||| || || |||||||||||| || ||||||||||| Sbjct 166 TTTTTCTGGACCTACG-GGTTCGAGGAACTCAACAAGGTCGCCAGCGCGATGGCGATGCA 224 Query 3544 CAAGCGCTGGCGCAAGACGTACTTC 3568 ||||||||||| | ||||| ||| Sbjct 225 CAAGCGCTGGCCCCGCACGTATTTC 249 >seq213337 Length=546 Score = 86.0 bits (94), Expect = 2e-12 Identities = 111/151 (74%), Gaps = 2/151 (1%) Strand=Plus/Plus Query 20345 GACGATCGAGCCGATCGTC-TGCCGATGCCAGCTCTTCTCGCGGCGCTCCTGCATGCCGC 20403 |||||||| ||||| ||| ||||| ||||| ||| ||||| | | || || ||| Sbjct 1 GACGATCGCGCCGAGCGTTGTGCCG-TGCCATGCCTTTTCGCGCCTGTTCTTCAAATCGC 59 Query 20404 TCGTCATCGCGGCCGAGCGCGCGCGGATGGTGATGATGTCCGGCGCGCCGCTGTGCTCGA 20463 | || | |||||| ||| ||||| | |||||||| ||| || | |||| ||| | || Sbjct 60 TGGTGAAGTCGGCCGCGCGAGCGCGCACGGTGATGACGTCGGGAGGACCGCCGTGATTGA 119 Query 20464 CTTCGTTCACAACGAAGCTGCCCTTGTCGAC 20494 | |||| ||| | ||| | |||||||||||| Sbjct 120 CCTCGTCCACGATGAACCAGCCCTTGTCGAC 150 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 119927293280446