Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Heliconius_20pachinus_20[genbank_20GCA_5F900068735.1_202017-04-26] 277,083 sequences; 279,264,790 total letters Query= NC_008035.3 Length=126629 Score E Sequences producing significant alignments: (Bits) Value seq10526 199 3e-46 seq28654 120 2e-22 seq5960 84.2 2e-11 >seq10526 Length=5062 Score = 199 bits (220), Expect = 3e-46 Identities = 770/1194 (64%), Gaps = 33/1194 (3%) Strand=Plus/Plus Query 95829 ATATTCATGGCATTAAGCAGATCGCCATTGTCAGCGTCTATTTCCCAGGCAAACAAACCT 95888 || ||||||||||| || || || ||||| |||||||| | |||||| ||||| | ||| Sbjct 2943 ATGTTCATGGCATTCAGTAGGTCACCATTATCAGCGTCCACTTCCCAAGCAAAGAGACCA 3002 Query 95889 CCTAACTTGTTTTGTTCCACATATCGACCTTTAGCTATAACAGAATCAACACTATCATAT 95948 |||| |||||| | | |||||| ||| || | |||||||| | || ||||||| Sbjct 3003 CCTAGCTTGTTATTTCTTACATATTTACCCTTTTCAATAACAGATCTAGCATTATCATAG 3062 Query 95949 GAAATTAAATCGCCT-TTGGTTTTATCAAAAACGTAGGCGGCTTTTGCTACGTTGTCA-A 96006 | | | ||| || ||| | | | |||| | |||| ||||| || || ||||| | Sbjct 3063 GTTACAAGATCTCCAGTTGATGGTCTGAAAA-CATAGGGGGCTTGGGCGACATTGTCGTA 3121 Query 96007 ATTTAACAATATATTTGTTT-----ATTTCGTTTTTGATTTGGCGATAATCAACAACGCC 96061 || ||| || || ||||| || || | | || ||||| || || Sbjct 3122 ATGGAACTCCCACTTGCCTTGAGCAATTTCATTCGCAATCTCCCTGTAGTCAACCACTCC 3181 Query 96062 ATCTTCCCAAGTGCCCGAAACGGGCCCGTTACTACTTCCCAAAAAATAGTTATCGTTTTC 96121 |||| |||||| || || || || || | || || | | || ||| Sbjct 3182 GTCTTGCCAAGTTCCTTTGACAGGTCCAGTAGCGTTGCCTGTGAAGGGAATGTTGTCTTC 3241 Query 96122 GTAATT-TGACACTCCAGTCCAGCCGCGACCGTACATGGCCACGCCCACAATAATTTTGC 96180 ||||| ||| || ||||||||||| ||||| ||||| || || || || | ||| || Sbjct 3242 GTAATCATGA-ACGCCAGTCCAGCCACGACCATACATAGCAACACCTACTACAATCTTCT 3300 Query 96181 GCGGGTCCACGCCTTGATTTGTGAGCAA---TTTAACGGCATGGTCCGTGTTGTACAGCT 96237 || | ||| || || | ||||| ||| || || ||| | |||| | Sbjct 3301 TAGGATTCACTCCCTGC---GCCAGCAAGTATTTTACTCCAAAGTCAGATGTGTAAGTTT 3357 Query 96238 CGTTTGGGTTCCAACTCGGCGCGTACAGTGTAGTTTGGTATCCCAAATCAATGTTTGACC 96297 | || || ||||| |||||||||| || ||||| | ||| | | | ||||||| Sbjct 3358 CCTTGGGATTCCACGCAGGCGCGTACAATGGCGTTTGATGTCCAAGAGTATCATTTGACC 3417 Query 96298 ACGCGCCTTTAAAATCGTAGCTCATGAGAAATATTTTGTCGAGGAACTTTTGCGCAACGT 96357 | || || || || ||||| ||||| | || || | || | | ||||| || Sbjct 3418 AGGCTCCCTTGAAGTCGTAACTCATCAAGAAAATATGATCCATATAATTTTGAGCCTTAC 3477 Query 96358 CGTATTTTACTACAGCAATTTTGTCGTGGCCGGCACTGATTGCACTTGTCAACTCGTACG 96417 | || | || || ||||| || || || || || ||| || || ||||| Sbjct 3478 CATAGTCAACAACTTGGATTTTATCCCATCCAGCGCTAATAGCAGAAGTTAATTCGTATT 3537 Query 96418 TTTTGCCCGTTT--GCAGTTGCAACTCGTCTAACATCACGCGCAATTCCTTTAATAGAAT 96475 | || || | | |||| | ||| || | |||| | || ||||| || | | | | Sbjct 3538 TCTTACCATTCTTAGCAGAG--AGCTCATCGAGCATCTCACGTAATTCTTTCATCAAACT 3595 Query 96476 GTTGTACGTGTCAGCGTCGCGCTCTTTGTTGCCGAGCGTC-GGGTTGGCGCCTTTACCGC 96534 || ||| | || ||| | | ||||| ||| ||||| || ||||| || | Sbjct 3596 TACATAACAATCACCATCT---TCTGGGCTACCGAG-GTCAGGGTTAGCACCTTTGCCAC 3651 Query 96535 CCGGAAATTCCCAGTCGATGTCCACTCCGTCGAAAAATTTCCAAACCTGCAAAAATTCTC 96594 | || || ||||| ||||| || || || ||||| |||||||| | | ||| || Sbjct 3652 CAGGGAACTCCCAATCGATATCAACACCATCGAAGAATTTCCATGTTAGAAGAAACTCCT 3711 Query 96595 TGACGGAGTCTACAAACACGCGCCGTTTTTCCGCGTCGTGCATGTAATA----GAACGGG 96650 | || || | ||||| || | | | | | || || ||| | ||| || Sbjct 3712 TTACTGACTGCACAAAT---CGTGTTCTCTTAGATTTGT-CAACTAAAAAGAAGAAAGGA 3767 Query 96651 TCGGACAGTGTCCAGCCGCCGATAGACGGCAGAATTTTAAGGTGTGGATTAGCCAGTTTG 96710 |||| || ||||| || || ||||| || ||||| || | | || || |||| Sbjct 3768 TCGGCAAGCGTCCACCCACCAATAGAGGGAAGAATCTTCAATTCAGGGCGGGCTTGTTTT 3827 Query 96711 GCCGCCATCAACTGACCAAAGTTGCCTTTGTAGGGCTCGTTCCAAGCAGACACGCCCTTT 96770 | ||| || || ||||||||||||||||||||||||||||| | ||||| || ||| Sbjct 3828 AGTGACATTAATTGGCCAAAGTTGCCTTTGTAGGGCTCGTTCCATGAAGACAATCCTTTT 3887 Query 96771 TGCGGTTTTTGTACTGCGGCCCAAGGGTCGTGAATAGCAACTTTAAAATCTGAACGGCCC 96830 || |||||||||| ||| ||||| || ||||| || | ||||| || || |||||| Sbjct 3888 TGTGGTTTTTGTAATGCTGCCCATGGATCGTGGATTGAGACTTTGAAGTCCTCACGGCCG 3947 Query 96831 TGGCAAGAGCGTTGCAGCGCTTCAAAACTACCGGGTATGGTTTTAAGGGCATCGTTAAGG 96890 || || || || || |||| ||||| || || ||| | ||| |||| | Sbjct 3948 CTACAGGATCGCTGTAGTGCTTGGAAACTGCCTTCGATCTCTTTTAAACTATCATTAATG 4007 Query 96891 CCGTCGCCGCCACAAATGGGTATAAACCCGTACAACAAATGTGACAAGTTGGGCAGCGGC 96950 ||||| ||||| ||||| || ||||| ||||| | |||||| | | || || | || Sbjct 4008 CCGTCACCGCCGCAAATTGGAATAAAGCCGTAGAGCAAATGAGTAAGATTAGGTATAGGT 4067 Query 96951 ACTTTGTCCACCGGAAAGTTACGACCATACACGCCCCATTCCACAAAATACGCA 97004 | ||||| || || || | | ||| || |||||||| || || || ||| Sbjct 4068 ATACGATCCACGGGGAATTTCCTAGGATAGACACCCCATTCTACGAAGTAGGCA 4121 >seq28654 Length=3315 Score = 120 bits (132), Expect = 2e-22 Identities = 165/229 (72%), Gaps = 4/229 (2%) Strand=Plus/Plus Query 16709 CCTCCTCGTAGCCTCAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCC 16768 || ||||| || | |||||| | ||| || || ||||||||||| ||||||||||| | Sbjct 1704 CCACCTCGCAGACGCAGTACTAGATGAAGGGTAGACTCCTTTTGGATGTTGTAGTCAGAG 1763 Query 16769 ATGGTTTTGGCGTCCTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGC 16828 | ||| | || |||||||| || || ||| | ||||| ||||| || || || Sbjct 1764 AGGGTGCGACCATCTTCCAATTGCTTACCAGCAAAGATAAGACGCTGCTGATCAGGTGGG 1823 Query 16829 ACGCCCTCTTTGTC--GGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCG 16886 | |||||||||||| || || ||| || || | | | ||| || ||| ||| Sbjct 1824 ATGCCCTCTTTGTCTTGGATTTTAGCT--TTTACATTTTCAATAGTATCAGAGGGTTCCA 1881 Query 16887 TTTCCACGGTGATGGTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCAT 16935 ||||| ||| ||||| ||||| || || ||||| |||||||||||||| Sbjct 1882 CTTCCAGGGTAATGGTCTTTCCAGTTAGGGTTTTAACAAAAATCTGCAT 1930 Score = 104 bits (114), Expect = 2e-17 Identities = 162/230 (70%), Gaps = 4/230 (2%) Strand=Plus/Plus Query 16709 CCTCCTCGTAGCCTCAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCC 16768 || || || |||| || ||| | ||| || || || |||||||| || || || || | Sbjct 2160 CCGCCACGAAGCCGCAATACTAAATGTAGGGTAGATTCCTTTTGAATATTATAATCAGAT 2219 Query 16769 ATGGTTTTGGCGTCCTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGC 16828 | || | | || |||| |||||| || ||| ||||||||| |||||| || || Sbjct 2220 AATGTACGGCCATCTTCCAGTTGTTTTCCAGCAAAAATAAGCCTCTGTTGATCTGGGGGA 2279 Query 16829 ACGCCCTCTTTGTC--GGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCG 16886 | ||||||||||| || ||||| |||||| | | | ||||||| ||||| Sbjct 2280 ATACCCTCTTTGTCTTGGATCTTTGC--CTTCACATTTTCGATAGTGTCGGACGGCTCTA 2337 Query 16887 TTTCCACGGTGATGGTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCATT 16936 || | |||||||||||||| || || || || ||||| ||||||||| Sbjct 2338 CCTCTAAAGTGATGGTTTTTCCTGTAAGAGTCTTAACAAAGATCTGCATT 2387 Score = 95.1 bits (104), Expect = 1e-14 Identities = 160/230 (70%), Gaps = 4/230 (2%) Strand=Plus/Plus Query 16708 CCCTCCTCGTAGCCTCAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGC 16767 ||| || || || | ||||| | ||||| || || || ||||| ||||| ||||| | Sbjct 563 CCCACCACGAAGACGAAGTACTAAATGCAAAGTAGATTCTTTTTGGATGTTATAGTCCGA 622 Query 16768 CATGGTTTTGGCGTCCTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGG 16827 || || | | ||||| || ||||| || ||| | || || ||||||||||| || Sbjct 623 CAGAGTGCGGCCATCCTCTAACTGTTTACCAGCAAAGATGAGACGCTGTTGGTCTGGGGG 682 Query 16828 CACGCCCTCTTTGTC--GGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCC 16885 | |||||| ||||| || || || ||| || | | | ||||||| |||||| Sbjct 683 AATGCCCTCCTTGTCTTGGATCTTAGC--CTTAACATTTTCGATAGTGTCGGATGGCTCC 740 Query 16886 GTTTCCACGGTGATGGTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCAT 16935 |||| |||||||| || || || || || || ||||| |||||||| Sbjct 741 ACCTCCAAAGTGATGGTCTTCCCAGTAAGAGTCTTAACAAAGATCTGCAT 790 Score = 86.0 bits (94), Expect = 5e-12 Identities = 158/230 (69%), Gaps = 4/230 (2%) Strand=Plus/Plus Query 16709 CCTCCTCGTAGCCTCAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCC 16768 |||||||| || | ||||||| || || || ||||| || || || |||||||| | | Sbjct 1020 CCTCCTCGGAGACGGAGTACCAAGTGAAGGGTCGACTCTTTCTGGATATTGTAGTCAGAC 1079 Query 16769 ATGGTTTTGGCGTCCTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGC 16828 | ||| | | || |||| |||||| || || | ||||| || ||||| || ||| Sbjct 1080 AGGGTGCGGCCATCTTCCAGTTGTTTACCAGCGAAGATAAGACGTTGTTGATCTGGAGGA 1139 Query 16829 ACGCCCTCTTTGTCGGCAATTT--GCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCG 16886 | || || || || ||| | ||| || || | | | ||||| ||||| Sbjct 1140 ATTCCTTCCTTATCTTGAATCTTAGCT--TTAACATTTTCAATGGTGTCTGATGGCTCAA 1197 Query 16887 TTTCCACGGTGATGGTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCATT 16936 ||||| || || |||||||| || || ||||||||||| || |||||| Sbjct 1198 CTTCCAAAGTTATTGTTTTTCCAGTAAGTGTTTTGACAAATATTTGCATT 1247 Score = 84.2 bits (92), Expect = 2e-11 Identities = 148/214 (69%), Gaps = 4/214 (2%) Strand=Plus/Plus Query 16724 AGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCCATGGTTTTGGCGTCC 16783 ||||| | |||| || || || ||||| ||||||||||| | || || | || Sbjct 1947 AGTACTAAGTGCAAAGTAGATTCTTTTTGGATGTTGTAGTCAGACAGTGTACGACCATCT 2006 Query 16784 TCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGCACGCCCTCTTTGTC- 16842 || ||||| ||||||||| ||||||| || ||||| ||| ||| | ||| |||||||| Sbjct 2007 TCTAATTGCTTGCCCGCAAAAATAAGACGTTGTTGATCCGGAGGAATGCCTTCTTTGTCT 2066 Query 16843 -GGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTTTCCACGGTGATGG 16901 || || ||| ||||| | | | ||||| | || ||| | || || | Sbjct 2067 TGGATTTTAGCT--TTCACATTTTCAATTGTGTCAGAAGCTTCAACTTCTAAAGTAATTG 2124 Query 16902 TTTTTCCGGTCAGCGTTTTGACAAAAATCTGCAT 16935 ||||||| || || ||||| ||||| || ||||| Sbjct 2125 TTTTTCCAGTGAGTGTTTTAACAAAGATTTGCAT 2158 >seq5960 Length=5068 Score = 84.2 bits (92), Expect = 2e-11 Identities = 85/111 (77%), Gaps = 0/111 (0%) Strand=Plus/Minus Query 29344 GGCGGCGTGGGGCTGAATCTAACGGGCGGCAACCACCTCGTTTTGTTGGAGCCGCACTGG 29403 |||||||| |||||||| || |||| | |||||| | || |||| ||||||||| Sbjct 3603 GGCGGCGTAGGGCTGAACCTGTGCGGCGCGAGCCACCTGCTGCTGCTGGACCCGCACTGG 3544 Query 29404 AACCCGCAGGTGGAGTTGCAGGCGCAGGGCCGCATCCACCGTTTGGGCCAG 29454 ||||||||| ||||| |||||| |||| |||| | |||| |||| ||| Sbjct 3543 AACCCGCAGCTGGAGGAGCAGGCACAGGACCGCGTGTACCGCGTGGGGCAG 3493 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 403720038458170