Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Heliconius_20pachinus_20[genbank_20GCA_5F900068735.1_202017-04-26] 277,083 sequences; 279,264,790 total letters Query= NC_008168.1 Length=104710 Score E Sequences producing significant alignments: (Bits) Value seq21223 187 2e-42 seq28654 145 5e-30 seq163206 143 2e-29 seq123 140 2e-28 seq195156 118 7e-22 seq27511 113 3e-20 seq127329 107 1e-18 seq17638 107 1e-18 seq82506 104 2e-17 seq27512 95.1 8e-15 seq62561 89.7 3e-13 seq41046 86.0 4e-12 >seq21223 Length=5645 Score = 187 bits (206), Expect = 2e-42 Identities = 127/143 (89%), Gaps = 0/143 (0%) Strand=Plus/Plus Query 6162 ATGGGGACCCTGAACGTAAATCGTAATGTGGCGGACGCGTTCTACCGCTACAAAATGCCG 6221 |||||| || ||||||| || | ||||||||||||||||||||||||||||| |||||| Sbjct 4055 ATGGGGTCCGTGAACGTGAACAGGAATGTGGCGGACGCGTTCTACCGCTACAAGATGCCG 4114 Query 6222 CGCATCTGCGCCAAGGTCGAGGGTAAGGGAAACGGTATTAAAACCGTCATTGTCAACATG 6281 ||||||||||||||||||||||||||||| ||||| || || |||||||| ||||||||| Sbjct 4115 CGCATCTGCGCCAAGGTCGAGGGTAAGGGGAACGGCATCAAGACCGTCATCGTCAACATG 4174 Query 6282 CCTGAAGTCGCTAAGGCGCTCGG 6304 | || |||||||||||||| || Sbjct 4175 CTAGAGGTCGCTAAGGCGCTTGG 4197 >seq28654 Length=3315 Score = 145 bits (160), Expect = 5e-30 Identities = 174/235 (74%), Gaps = 1/235 (0%) Strand=Plus/Plus Query 38086 CATTACCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAAT 38145 |||| ||||| | | |||||| ||||| |||||||| || ||||||||||| || | Sbjct 2384 CATT-CCACCACGAAGACGCAATACCAAGTGAAGAGTAGATTCTTTTTGAATATTATAGT 2442 Query 38146 CAGACAAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGG 38205 |||| | | ||| |||| || ||||| ||||| || || || | ||||||||||| | Sbjct 2443 CAGAAAGAGTGCGTCCGTCTTCCAATTGCTTTCCAGCGAAAATCAAACGTTGTTGATCTG 2502 Query 38206 AGGGGACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTT 38265 || | |||||| ||||| |||||| || ||||| | | |||||| | || Sbjct 2503 GAGGAATGCCTTCCTTGTCTTGAATTTTGGCTTTTACATTTTCAATAGTATCGGAAGGTT 2562 Query 38266 CAACTTCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCATGTT 38320 ||||||| || ||||| ||||||||||| | |||||||| || |||||||| || Sbjct 2563 CAACTTCCAAAGTAATGGTTTTACCCGTAAGTGTTTTCACAAAGATCTGCATTTT 2617 Score = 120 bits (132), Expect = 2e-22 Identities = 164/229 (72%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 38089 TACCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAG 38148 |||||||||| ||||| | || || || | ||| || ||||| || ||||| |||| Sbjct 1930 TACCACCTCTTAAACGAAGTACTAAGTGCAAAGTAGATTCTTTTTGGATGTTGTAGTCAG 1989 Query 38149 ACAAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGG 38208 ||| ||| | || |||||||| || || ||||| || || ||||||||||| | | Sbjct 1990 ACAGTGTACGACCATCTTCTAATTGCTTGCCCGCAAAAATAAGACGTTGTTGATCCGGAG 2049 Query 38209 GGACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAA 38268 | | |||||||||||| ||||| |||||||| | | || || | ||||| Sbjct 2050 GAATGCCTTCTTTGTCTTGGATTTTAGCTTTCACATTTTCAATTGTGTCAGAAGCTTCAA 2109 Query 38269 CTTCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCAT 38317 ||||||| ||||| ||||| || || | ||||| || || || ||||| Sbjct 2110 CTTCTAAAGTAATTGTTTTTCCAGTGAGTGTTTTAACAAAGATTTGCAT 2158 Score = 113 bits (124), Expect = 3e-20 Identities = 165/232 (71%), Gaps = 1/232 (0%) Strand=Plus/Plus Query 38086 CATTACCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAAT 38145 |||| ||||| | | ||| | ||| || || || || ||| || ||||||||||||| Sbjct 1244 CATT-CCACCACGGAGACGAAGCACTAAGTGCAGGGTTGACTCTTTCTGAATATTGTAAT 1302 Query 38146 CAGACAAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGG 38205 |||||||| || | || || ||||| ||||| ||||| || || || ||||| || | Sbjct 1303 CAGACAAAGTGCGACCATCTTCCAATTGCTTTCCAGCAAAAATGAGACGCTGTTGGTCTG 1362 Query 38206 AGGGGACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTT 38265 ||||| ||| || || ||| ||||| || ||||||| || || || || Sbjct 1363 GGGGGATGCCCTCCTTATCCTGTATTTTAGCTTTGACATTCTCGATTGTGTCAGATGGTT 1422 Query 38266 CAACTTCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCAT 38317 | ||||| | ||||| || || || ||||| ||||| || ||||| ||||| Sbjct 1423 CTACTTCCAGGGTAATGGTCTTTCCAGTCAATGTTTTGACAAATATTTGCAT 1474 Score = 111 bits (122), Expect = 1e-19 Identities = 162/229 (71%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 38089 TACCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAG 38148 |||| |||| ||||| || ||||| || | |||| ||| || |||||||| || |||| Sbjct 790 TACCTCCTCGTAAACGTAATACCAAGTGCAAAGTGGACTCTTTCTGAATATTATAGTCAG 849 Query 38149 ACAAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGG 38208 | | | ||| | || || | || || || || || || || ||||||||||| | || Sbjct 850 AGAGAGTACGGCCATCCTCCAGCTGCTTGCCAGCGAAAATGAGACGTTGTTGATCTGGGG 909 Query 38209 GGACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAA 38268 | | || |||||||| || || || ||||| | | ||| ||| ||||| Sbjct 910 GAATACCCTCTTTGTCTTGGATCTTAGCTTTAACATTTTCAATAGTGTCTGAGGGTTCAA 969 Query 38269 CTTCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCAT 38317 |||||||||| |||||||| || |||| || || || || |||||||| Sbjct 970 CTTCTAATGTGATAGTTTTCCCTGTCAGTGTCTTTACAAAGATCTGCAT 1018 Score = 104 bits (114), Expect = 2e-17 Identities = 152/215 (71%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 38103 CGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGACAAAACACGTTCG 38162 ||||| || ||||| || || |||||||||||||| |||||||| || ||| | Sbjct 2172 CGCAATACTAAATGTAGGGTAGATTCCTTTTGAATATTATAATCAGATAATGTACGGCCA 2231 Query 38163 TCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGGGACGCCTTCTTTG 38222 || || | ||||||||| ||||| || || | |||||||| | ||| | || |||||| Sbjct 2232 TCTTCCAGTTGTTTTCCAGCAAAAATAAGCCTCTGTTGATCTGGGGGAATACCCTCTTTG 2291 Query 38223 TCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAACTTCTAATGTAATA 38282 || || ||| ||||||||| | || ||| || || || ||||| || || Sbjct 2292 TCTTGGATCTTTGCCTTCACATTTTCGATAGTGTCGGACGGCTCTACCTCTAAAGTGATG 2351 Query 38283 GTTTTACCCGTCAAGGTTTTCACGAATATCTGCAT 38317 ||||| || || | || || || || |||||||| Sbjct 2352 GTTTTTCCTGTAAGAGTCTTAACAAAGATCTGCAT 2386 >seq163206 Length=548 Score = 143 bits (158), Expect = 2e-29 Identities = 130/164 (79%), Gaps = 0/164 (0%) Strand=Plus/Plus Query 6438 TTTATTCGCAAGTTTGTGCTGTGTCGGGAATGCGATAACCCGGAGACCGAGCTTATTGTG 6497 ||||||||||| || || || |||| || ||||| || || ||||| ||||| || ||| Sbjct 103 TTTATTCGCAAATTCGTCCTCTGTCCCGAGTGCGACAATCCCGAGACGGAGCTGATAGTG 162 Query 6498 TCTACCAAGAGAAACACCATCTCTCAGGGCTGCAAAGCGTGCGGTTACCATGGCAAGCTG 6557 || |||||||| ||||||||||| || |||||||| |||||||| ||||| ||| || Sbjct 163 TCCACCAAGAGGAACACCATCTCGCAAGGCTGCAAGGCGTGCGGGTACCACGGCCCCTTG 222 Query 6558 GATTTATCACACAAACTCAACACCTTCATACTGAAGAATCCTCC 6601 || || || ||||| || ||||||||||||||||| || || Sbjct 223 GAATTCAACCATAAACTGAATACCTTCATACTGAAGAACCCGCC 266 >seq123 Length=7390 Score = 140 bits (154), Expect = 2e-28 Identities = 77/77 (100%), Gaps = 0/77 (0%) Strand=Plus/Plus Query 19947 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGC 20006 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 2476 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGC 2535 Query 20007 GGTAATATTTAGCCTTA 20023 ||||||||||||||||| Sbjct 2536 GGTAATATTTAGCCTTA 2552 Score = 96.9 bits (106), Expect = 2e-15 Identities = 64/71 (90%), Gaps = 5/71 (7%) Strand=Plus/Plus Query 25926 TCGCTAGATAGTAGATAGGG-----GGTAATCTCGTTAATCCTTTCATGCGCGTCACTAA 25980 |||||||||||||||||||| || |||||||||||||| ||||||||||||||||| Sbjct 1 TCGCTAGATAGTAGATAGGGACAGCGGGAATCTCGTTAATCCATTCATGCGCGTCACTAA 60 Query 25981 TTAGATGACGA 25991 ||||||||||| Sbjct 61 TTAGATGACGA 71 >seq195156 Length=2246 Score = 118 bits (130), Expect = 7e-22 Identities = 155/212 (73%), Gaps = 2/212 (1%) Strand=Plus/Minus Query 6194 GGACGCGTTCTACCGCTACAAAATGCCGC-GCATCTGCGCCAAGGTCGAGGGTAAGGGAA 6252 ||| |||||| |||| |||||||||||| || | | | ||| ||||||| ||||||| Sbjct 1078 GGATGCGTTCCACCGGTACAAAATGCCGGTGCTGCAGA-CGAAGATCGAGGGGAAGGGAA 1020 Query 6253 ACGGTATTAAAACCGTCATTGTCAACATGCCTGAAGTCGCTAAGGCGCTCGGACGCCCTG 6312 | || ||||| || || ||| || ||| || || || || ||||||| || || Sbjct 1019 ATGGGATTAAGACGGTGATTCCGAATATGAGCGACGTTGCGAAAGCGCTCGCGCGTCCGC 960 Query 6313 CCACCTACCCGACGAAATATTTCGGGTGCGAACTTGGCGCTCAGACGCAGTTTGATCACA 6372 | || |||||||| || | ||||||||||| || || || |||||| || ||| | | Sbjct 959 CGACATACCCGACTAAGTTCTTCGGGTGCGAGCTCGGTGCGCAGACGTCGTCTGACGAGA 900 Query 6373 AAAACGAGCGCTTCATCGTTAACGGATCGCAT 6404 | ||||| || | ||| ||||| ||| ||||| Sbjct 899 AGAACGACCGGTACATTGTTAATGGAGCGCAT 868 >seq27511 Length=800 Score = 113 bits (124), Expect = 3e-20 Identities = 165/232 (71%), Gaps = 1/232 (0%) Strand=Plus/Minus Query 38086 CATTACCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAAT 38145 |||| ||||| || | |||| |||||| || | ||| ||||| |||||||| |||| Sbjct 447 CATT-CCACCCCTAAGGCGCAGCACCAAGTGCAAAGTAGATTCCTTCTGAATATTATAAT 389 Query 38146 CAGACAAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGG 38205 | ||||| |||| | || || | |||||||| ||||| || || | ||||| || | Sbjct 388 CTGACAATGTACGTCCATCTTCCAGCTGTTTTCCTGCAAAAATAAGCCTCTGTTGGTCAG 329 Query 38206 AGGGGACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTT 38265 || | |||||||||||| ||| ||| ||| ||||| | | ||||| | || Sbjct 328 GAGGAATGCCTTCTTTGTCTTGAATCTTTGCCTTAACATTTTCTATTGTATCAGAAGCTT 269 Query 38266 CAACTTCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCAT 38317 | ||||| || || |||||||| || |||| || || || || || ||||| Sbjct 268 CCACTTCCAAAGTGATAGTTTTGCCAGTCAGTGTCTTTACAAAAATTTGCAT 217 Score = 95.1 bits (104), Expect = 8e-15 Identities = 161/232 (69%), Gaps = 1/232 (0%) Strand=Plus/Minus Query 38086 CATTACCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAAT 38145 |||| |||||||||| |||| |||| || | ||| ||||| ||||||||||| | Sbjct 675 CATT-CCACCTCTCAGCCGCAGTACCAGGTGCAAAGTTGATTCCTTCTGAATATTGTAGT 617 Query 38146 CAGACAAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGG 38205 |||| | ||| | || || | || ||||| ||||| || || | ||| ||||| | Sbjct 616 CAGATAGTGTGCGTCCATCTTCAAGCTGCTTTCCAGCAAAAATAAGTCTTTGCTGATCTG 557 Query 38206 AGGGGACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTT 38265 ||| | || ||||| ||| |||||| ||| ||||| | | ||||| | || Sbjct 556 GGGGAATACCCTCTTTATCCTGAATTTTCGCCTTAACATTTTCAATTGTATCAGAAGCTT 497 Query 38266 CAACTTCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCAT 38317 | ||||| || || ||||| || || |||| || || || || || ||||| Sbjct 496 CCACTTCCAAAGTGATAGTCTTGCCAGTCAGTGTCTTTACAAAAATTTGCAT 445 >seq127329 Length=661 Score = 107 bits (118), Expect = 1e-18 Identities = 135/183 (74%), Gaps = 2/183 (1%) Strand=Plus/Plus Query 7137 GCGCTGCTGCCCAAAGTGGCCGGCGCGCTTAAACTGCTGTACGACCTAGACATAGTACAA 7196 || ||||| ||||| || ||| ||| || || ||||| |||||||| ||||| || | Sbjct 78 GCTCTGCTCCCCAAGCTGCCCGCCGCCCTCAAGCTGCTCTACGACCTGGACATCGTGGAC 137 Query 7197 GAGAAAACGATCATGGAGTGGTTCCACAAGCCGTCGTGCAAG-ACTCTCAGCAAAGAAGT 7255 ||| | || |||| ||| | |||||| ||| ||||| || | | ||| || || Sbjct 138 GAGCGCGCCGTCTTGGATTGGGCCGCCAAGCCCTCGCGCAAGTACGCGCC-CAAGGAGGT 196 Query 7256 GATGGCTGACGTGCACCGCCGCGCGCAGCCCTTCCTGAACTGGCTGCAGCAAGCCGAGGA 7315 | |||| ||||||| || || |||||||||||||| | ||||||||||| ||||| || Sbjct 197 GGTGGCCGACGTGCTGCGGCGTGCGCAGCCCTTCCTAGAGTGGCTGCAGCAGGCCGACGA 256 Query 7316 TGA 7318 || Sbjct 257 GGA 259 >seq17638 Length=4506 Score = 107 bits (118), Expect = 1e-18 Identities = 70/77 (91%), Gaps = 0/77 (0%) Strand=Plus/Minus Query 19947 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGC 20006 |||||| | |||||| ||||||| |||||||||||||||||||||||||||||||||| | Sbjct 4100 CTCTCTTTCCAAAGTGCTTTTCATCTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCTC 4041 Query 20007 GGTAATATTTAGCCTTA 20023 | |||||||||||||| Sbjct 4040 GCCAATATTTAGCCTTA 4024 >seq82506 Length=2398 Score = 104 bits (114), Expect = 2e-17 Identities = 69/77 (90%), Gaps = 0/77 (0%) Strand=Plus/Plus Query 19947 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGC 20006 |||||| |||||||||||||||| |||||| |||| |||||||||||||||||||||| | Sbjct 446 CTCTCTTTTCAAAGTTCTTTTCATCTTTCCATCACTGTACTTGTTCGCTATCGGTCTCTC 505 Query 20007 GGTAATATTTAGCCTTA 20023 |||||||||||||| Sbjct 506 CCCAATATTTAGCCTTA 522 >seq27512 Length=242 Score = 95.1 bits (104), Expect = 8e-15 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 38091 CCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGAC 38150 |||||||||| ||| | || ||||| | ||| || || ||||||||||| || || Sbjct 1 CCACCTCTCAGACGAAGTACTAAATGTAAAGTAGATTCTTTCTGAATATTGTAGTCTGAT 60 Query 38151 AAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGGG 38210 | |||| | || || | || ||||| ||||| || || | |||||| || | || Sbjct 61 AGTGTACGTCCATCCTCAAGCTGCTTTCCAGCAAAAATAAGCCTTTGTTGGTCTGGAGGA 120 Query 38211 ACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAACT 38270 | |||||| || || ||||||| ||| ||||| | || || || |||||| Sbjct 121 ATGCCTTCCTTATCTTGAATTTTTGCCTTAACATTTTCGATTGTGTCAGAGGGCTCAACT 180 Query 38271 TCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCAT 38317 || | ||| ||||| || || |||| || || || ||||| ||||| Sbjct 181 TCCAGTGTGATAGTCTTGCCAGTCAGTGTCTTTACAAATATTTGCAT 227 >seq62561 Length=999 Score = 89.7 bits (98), Expect = 3e-13 Identities = 82/104 (79%), Gaps = 0/104 (0%) Strand=Plus/Minus Query 6321 CCGACGAAATATTTCGGGTGCGAACTTGGCGCTCAGACGCAGTTTGATCACAAAAACGAG 6380 || || ||||| ||||| || || || ||||| || |||||||| || ||| |||||| Sbjct 536 CCCACTAAATACTTCGGATGTGAGCTCGGCGCCCAAACGCAGTTCGACTTCAAGAACGAG 477 Query 6381 CGCTTCATCGTTAACGGATCGCATAACTCTGCCAAGCTGCAGGA 6424 ||||||||||| ||||| ||| |||| |||||| ||||||| Sbjct 476 CGCTTCATCGTCAACGGCAGCCATGACTCCGCCAAGTTGCAGGA 433 >seq41046 Length=7774 Score = 86.0 bits (94), Expect = 4e-12 Identities = 136/193 (70%), Gaps = 3/193 (2%) Strand=Plus/Plus Query 38127 TCCTTTTGAATATTGTAATCAGACAAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAAT 38186 ||||||||||| ||||| |||||||| |||| | || |||| |||||| || ||||| Sbjct 7191 TCCTTTTGAATGTTGTAGTCAGACAATGTACGTCCATCTTCTAGTTGTTTACCAGCAAAG 7250 Query 38187 ATTAGGCGTTGTTGATCGGAGGGGACGCCTTCTTTGTCCATAATTTTTTGC--TTCACAT 38244 || | ||||| || || | || | ||||| || | | | |||| || || |||| Sbjct 7251 ATCAAACGTTGCTGGTCTGGTGGAATACCTTCCTTAT-CTTGGATTTTAGCTTTTAACAT 7309 Query 38245 TCTGGACAGTATCTCCACTTTCAACTTCTAATGTAATAGTTTTACCCGTCAAGGTTTTCA 38304 | | | |||||| || || || | ||||| ||||||||||| | ||| || | Sbjct 7310 TTTCTATAGTATCAGAGGCCTCCACCTCGAGGGTAATGGTTTTACCCGTAAGGGTCTTGA 7369 Query 38305 CGAATATCTGCAT 38317 |||| || ||||| Sbjct 7370 CGAAAATTTGCAT 7382 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 333816100366973